Wall clock time and date at job start Wed Apr 1 2020 00:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.46769 * 2 1 4 4 H 1.08997 * 109.47370 * 55.00077 * 3 2 1 5 5 C 1.50708 * 109.46846 * 175.00143 * 3 2 1 6 6 N 1.34780 * 119.99606 * 299.99466 * 5 3 2 7 7 O 1.21273 * 120.00152 * 119.99969 * 5 3 2 8 8 N 1.46496 * 109.47036 * 294.99678 * 3 2 1 9 9 C 1.46770 * 124.34384 * 120.17368 * 8 3 2 10 10 C 1.54465 * 105.54268 * 163.30659 * 9 8 3 11 11 C 1.54604 * 101.79252 * 25.11989 * 10 9 8 12 12 C 1.34417 * 124.35086 * 300.02522 * 8 3 2 13 13 O 1.21283 * 124.94355 * 0.39351 * 12 8 3 14 14 C 1.46299 * 112.64882 * 264.29700 * 10 9 8 15 15 O 1.44585 * 111.27081 * 296.70208 * 14 10 9 16 16 C 1.39989 * 112.90818 * 280.66559 * 15 14 10 17 17 C 1.54168 * 113.22300 * 94.44811 * 16 15 14 18 18 N 1.48489 * 111.96847 * 318.71886 * 17 16 15 19 19 C 1.46896 * 111.00289 * 192.41469 * 18 17 16 20 20 C 1.50698 * 109.47365 * 293.95814 * 19 18 17 21 21 H 1.08001 * 119.99781 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00439 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00165 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99600 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47145 * 89.99737 * 24 22 20 26 26 H 1.48505 * 109.46742 * 209.99763 * 24 22 20 27 27 H 1.48496 * 109.46992 * 329.99586 * 24 22 20 28 28 C 1.44079 * 114.21540 * 318.82343 * 18 17 16 29 29 H 1.09003 * 109.46601 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46979 * 300.00036 * 1 2 3 31 31 H 1.08998 * 109.46449 * 60.00335 * 1 2 3 32 32 H 1.08995 * 109.46979 * 239.99964 * 2 1 3 33 33 H 1.09002 * 109.46691 * 120.00098 * 2 1 3 34 34 H 0.97005 * 120.00235 * 0.02562 * 6 5 3 35 35 H 0.96998 * 119.99955 * 179.97438 * 6 5 3 36 36 H 1.09001 * 110.40215 * 44.18780 * 9 8 3 37 37 H 1.08994 * 110.09612 * 282.26760 * 9 8 3 38 38 H 1.08999 * 110.48738 * 216.59963 * 11 10 9 39 39 H 1.09000 * 110.48502 * 93.95843 * 11 10 9 40 40 H 1.09002 * 109.12276 * 57.16131 * 14 10 9 41 41 H 1.09006 * 109.12039 * 176.24297 * 14 10 9 42 42 H 1.08996 * 108.73695 * 215.41431 * 16 15 14 43 43 H 1.08998 * 108.73353 * 333.60838 * 16 15 14 44 44 H 1.08996 * 108.98551 * 79.36269 * 17 16 15 45 45 H 1.09002 * 108.98224 * 198.08288 * 17 16 15 46 46 H 1.09003 * 109.47015 * 53.95356 * 19 18 17 47 47 H 1.09000 * 109.47522 * 173.95215 * 19 18 17 48 48 H 0.97001 * 119.99608 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.71667 * 333.47503 * 28 18 17 50 50 H 1.08995 * 109.72244 * 212.82155 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 7 4.1298 0.8912 1.2032 7 8 4.2217 1.9436 -0.7477 8 7 1.6525 2.0974 -1.2518 9 6 0.8105 3.2969 -1.3326 10 6 1.0239 3.8572 -2.7562 11 6 1.4472 2.5901 -3.5343 12 6 2.0247 1.6787 -2.4737 13 8 2.7181 0.7084 -2.6942 14 6 2.0391 4.9097 -2.8010 15 8 1.6375 6.0593 -2.0216 16 6 0.7221 6.8793 -2.6919 17 6 -0.7463 6.5586 -2.3486 18 7 -0.9924 5.0962 -2.2730 19 6 -2.4319 4.8056 -2.2394 20 6 -3.0215 5.3352 -0.9576 21 1 -2.3899 5.8371 -0.2396 22 6 -4.3673 5.1790 -0.7016 23 7 -4.8817 5.6408 0.4172 24 14 -5.4596 4.3102 -1.9433 25 1 -5.4876 2.8557 -1.6456 26 1 -6.8369 4.8592 -1.8603 27 1 -4.9225 4.5253 -3.3109 28 6 -0.3353 4.3323 -3.3028 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.5861 0.4916 1.9002 35 1 5.0965 0.8920 1.2828 36 1 1.1211 4.0300 -0.5883 37 1 -0.2360 3.0304 -1.1852 38 1 2.2038 2.8351 -4.2797 39 1 0.5816 2.1254 -4.0064 40 1 2.9761 4.5191 -2.4042 41 1 2.1908 5.2156 -3.8362 42 1 0.9242 7.9176 -2.4290 43 1 0.8634 6.7569 -3.7657 44 1 -0.9924 7.0097 -1.3875 45 1 -1.3915 6.9874 -3.1155 46 1 -2.9192 5.2846 -3.0886 47 1 -2.5864 3.7279 -2.2923 48 1 -5.8286 5.5312 0.5971 49 1 -0.1798 4.9576 -4.1820 50 1 -0.9468 3.4698 -3.5678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:32 Heat of formation + Delta-G solvation = -94.101079 kcal Electronic energy + Delta-G solvation = -32542.378208 eV Core-core repulsion = 28377.220987 eV Total energy + Delta-G solvation = -4165.157220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.20095 -39.61677 -38.43099 -36.21197 -35.87114 -35.14007 -33.65810 -32.52209 -31.84471 -29.42004 -28.53311 -27.49611 -26.87086 -25.69826 -24.42039 -22.44056 -22.06331 -21.39374 -20.18264 -19.42839 -18.98218 -17.65259 -16.97537 -16.86293 -16.43316 -16.24739 -16.00006 -15.64815 -14.92797 -14.86816 -14.58993 -14.35875 -14.32500 -14.13551 -13.80089 -13.60549 -13.13924 -13.07232 -12.95670 -12.66913 -12.54682 -12.40200 -12.10075 -12.01338 -11.84715 -11.50698 -11.37591 -11.24485 -11.14754 -10.96416 -10.78180 -10.47816 -10.40174 -10.27185 -9.99873 -9.90113 -9.77029 -9.48475 -9.31165 -9.27157 -8.62715 -8.47847 -7.36732 -6.10664 -4.08253 2.59727 2.73802 3.04603 3.22214 3.30539 3.31510 3.54269 3.90958 4.35610 4.39691 4.52219 4.72643 4.79164 4.82771 4.85053 4.95683 5.01018 5.15970 5.21676 5.32435 5.40139 5.40975 5.47818 5.55657 5.62975 5.64510 5.76320 5.78418 5.85427 5.88516 5.91987 6.00423 6.04611 6.16052 6.24787 6.27040 6.40509 6.59605 6.63314 6.73692 6.75334 6.90373 7.19698 7.32670 7.44666 7.54206 7.80525 8.02329 8.17918 8.43991 8.60397 8.99590 9.51137 11.02301 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.004246 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.205405 B = 6592.689585 C = 7696.467104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.142 3.858 4 H 0.117 0.883 5 C 0.508 3.492 6 N -0.857 5.857 7 O -0.521 6.521 8 N -0.604 5.604 9 C 0.137 3.863 10 C -0.095 4.095 11 C -0.144 4.144 12 C 0.529 3.471 13 O -0.532 6.532 14 C 0.080 3.920 15 O -0.356 6.356 16 C 0.059 3.941 17 C 0.047 3.953 18 N -0.536 5.536 19 C 0.167 3.833 20 C -0.508 4.508 21 H 0.082 0.918 22 C 0.070 3.930 23 N -0.899 5.899 24 Si 0.871 3.129 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.269 1.269 28 C 0.073 3.927 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.400 0.600 35 H 0.400 0.600 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.087 0.913 45 H 0.036 0.964 46 H -0.012 1.012 47 H 0.023 0.977 48 H 0.263 0.737 49 H 0.035 0.965 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.313 -7.060 -2.194 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.035 3.965 4 H 0.135 0.865 5 C 0.291 3.709 6 N -0.422 5.422 7 O -0.395 6.395 8 N -0.338 5.338 9 C 0.016 3.984 10 C -0.097 4.097 11 C -0.185 4.185 12 C 0.317 3.683 13 O -0.409 6.409 14 C 0.004 3.996 15 O -0.273 6.273 16 C -0.019 4.019 17 C -0.081 4.081 18 N -0.260 5.260 19 C 0.042 3.958 20 C -0.546 4.546 21 H 0.100 0.900 22 C -0.132 4.132 23 N -0.538 5.538 24 Si 0.699 3.301 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.194 1.194 28 C -0.057 4.057 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.228 0.772 35 H 0.231 0.769 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.054 0.946 46 H 0.005 0.995 47 H 0.041 0.959 48 H 0.073 0.927 49 H 0.053 0.947 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.032 -7.284 -2.230 15.967 hybrid contribution -1.170 -0.373 -1.084 1.638 sum 12.863 -7.657 -3.314 15.332 Atomic orbital electron populations 1.21728 0.94016 1.01924 1.02931 1.21889 0.97656 0.93974 1.03649 1.20829 0.91094 0.95901 0.88706 0.86508 1.20984 0.91198 0.77254 0.81430 1.43812 1.11344 1.63150 1.23925 1.90746 1.65244 1.44104 1.39400 1.48104 1.51156 1.30038 1.04480 1.22117 0.95070 0.84477 0.96769 1.21094 0.97667 0.94801 0.96120 1.22454 1.02946 0.95310 0.97765 1.20660 0.78773 0.84618 0.84207 1.90655 1.37895 1.28444 1.83894 1.21438 0.96516 0.86245 0.95401 1.87828 1.60468 1.35850 1.43165 1.22472 0.89597 0.94607 0.95272 1.22991 0.94020 0.88599 1.02489 1.60383 1.13678 1.06462 1.45492 1.20249 0.82521 0.95827 0.97227 1.21027 0.93574 1.37247 1.02747 0.89993 1.24888 0.97848 0.95383 0.95062 1.69889 1.13151 1.46571 1.24167 0.86934 0.80423 0.80336 0.82451 1.20194 1.21260 1.19383 1.21868 0.93160 0.98074 0.92646 0.92459 0.92080 0.92067 0.89862 0.90852 0.77180 0.76913 0.89521 0.89010 0.88404 0.87549 0.89168 0.92904 0.89967 0.94336 0.89440 0.94626 0.99479 0.95876 0.92680 0.94680 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.80 37.16 0.36 -1.26 16 2 C -0.13 -1.42 5.30 -26.73 -0.14 -1.57 16 3 C 0.14 1.72 2.67 -69.08 -0.18 1.54 16 4 H 0.12 1.21 8.07 -51.93 -0.42 0.79 16 5 C 0.51 6.66 7.13 -10.98 -0.08 6.59 16 6 N -0.86 -7.11 8.74 31.22 0.27 -6.84 16 7 O -0.52 -9.24 15.73 -9.06 -0.14 -9.38 16 8 N -0.60 -8.56 2.08 -166.16 -0.35 -8.90 16 9 C 0.14 2.02 5.65 -3.13 -0.02 2.00 16 10 C -0.09 -1.29 0.61 -155.56 -0.09 -1.38 16 11 C -0.14 -1.85 5.96 -26.75 -0.16 -2.01 16 12 C 0.53 8.27 6.68 -10.86 -0.07 8.20 16 13 O -0.53 -9.94 15.35 -9.07 -0.14 -10.08 16 14 C 0.08 1.08 4.92 33.97 0.17 1.25 16 15 O -0.36 -5.47 10.02 -32.90 -0.33 -5.80 16 16 C 0.06 0.82 6.06 37.77 0.23 1.05 16 17 C 0.05 0.80 5.47 -2.33 -0.01 0.79 16 18 N -0.54 -9.73 2.93 -235.60 -0.69 -10.42 16 19 C 0.17 3.65 3.70 -4.98 -0.02 3.63 16 20 C -0.51 -13.31 9.21 -34.44 -0.32 -13.63 16 21 H 0.08 2.37 7.38 -52.49 -0.39 1.98 16 22 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 23 N -0.90 -26.32 13.96 55.43 0.77 -25.54 16 24 Si 0.87 20.39 27.47 -169.99 -4.67 15.72 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 28 C 0.07 1.07 4.24 -4.80 -0.02 1.05 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 32 H 0.08 1.11 6.62 -51.93 -0.34 0.77 16 33 H 0.07 0.57 7.43 -51.93 -0.39 0.18 16 34 H 0.40 2.02 8.19 -40.82 -0.33 1.69 16 35 H 0.40 2.95 8.93 -40.82 -0.36 2.59 16 36 H 0.09 1.39 7.55 -51.93 -0.39 1.00 16 37 H 0.09 1.49 7.38 -51.93 -0.38 1.11 16 38 H 0.10 1.14 7.92 -51.93 -0.41 0.73 16 39 H 0.11 1.23 7.35 -51.93 -0.38 0.85 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.05 0.62 7.48 -51.93 -0.39 0.23 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.04 0.48 6.57 -51.93 -0.34 0.14 16 44 H 0.09 1.71 7.24 -51.93 -0.38 1.33 16 45 H 0.04 0.61 7.93 -51.93 -0.41 0.20 16 46 H -0.01 -0.28 7.04 -51.93 -0.37 -0.65 16 47 H 0.02 0.50 7.07 -51.93 -0.37 0.14 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.04 0.48 6.91 -51.93 -0.36 0.12 16 50 H 0.07 1.05 6.67 -51.93 -0.35 0.70 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -34.40 382.24 -7.98 -42.39 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.02 Total: 5.01 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -0.45 Total: 8.08 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.01 Total: -51.70 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.61 Total: -25.26 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.40 -7.98 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.715 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds