Wall clock time and date at job start Wed Apr 1 2020 00:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.46769 * 2 1 4 4 H 1.08997 * 109.47370 * 55.00077 * 3 2 1 5 5 C 1.50708 * 109.46846 * 175.00143 * 3 2 1 6 6 N 1.34780 * 119.99606 * 299.99466 * 5 3 2 7 7 O 1.21273 * 120.00152 * 119.99969 * 5 3 2 8 8 N 1.46496 * 109.47036 * 294.99678 * 3 2 1 9 9 C 1.46770 * 124.34384 * 120.17368 * 8 3 2 10 10 C 1.54465 * 105.54268 * 163.30659 * 9 8 3 11 11 C 1.54604 * 101.79252 * 25.11989 * 10 9 8 12 12 C 1.34417 * 124.35086 * 300.02522 * 8 3 2 13 13 O 1.21283 * 124.94355 * 0.39351 * 12 8 3 14 14 C 1.46299 * 112.64882 * 264.29700 * 10 9 8 15 15 O 1.44585 * 111.27081 * 296.70208 * 14 10 9 16 16 C 1.39989 * 112.90818 * 280.66559 * 15 14 10 17 17 C 1.54168 * 113.22300 * 94.44811 * 16 15 14 18 18 N 1.48489 * 111.96847 * 318.71886 * 17 16 15 19 19 C 1.46896 * 111.00289 * 192.41469 * 18 17 16 20 20 C 1.50698 * 109.47365 * 293.95814 * 19 18 17 21 21 H 1.08001 * 119.99781 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00439 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00165 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99600 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47145 * 89.99737 * 24 22 20 26 26 H 1.48505 * 109.46742 * 209.99763 * 24 22 20 27 27 H 1.48496 * 109.46992 * 329.99586 * 24 22 20 28 28 C 1.44079 * 114.21540 * 318.82343 * 18 17 16 29 29 H 1.09003 * 109.46601 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46979 * 300.00036 * 1 2 3 31 31 H 1.08998 * 109.46449 * 60.00335 * 1 2 3 32 32 H 1.08995 * 109.46979 * 239.99964 * 2 1 3 33 33 H 1.09002 * 109.46691 * 120.00098 * 2 1 3 34 34 H 0.97005 * 120.00235 * 0.02562 * 6 5 3 35 35 H 0.96998 * 119.99955 * 179.97438 * 6 5 3 36 36 H 1.09001 * 110.40215 * 44.18780 * 9 8 3 37 37 H 1.08994 * 110.09612 * 282.26760 * 9 8 3 38 38 H 1.08999 * 110.48738 * 216.59963 * 11 10 9 39 39 H 1.09000 * 110.48502 * 93.95843 * 11 10 9 40 40 H 1.09002 * 109.12276 * 57.16131 * 14 10 9 41 41 H 1.09006 * 109.12039 * 176.24297 * 14 10 9 42 42 H 1.08996 * 108.73695 * 215.41431 * 16 15 14 43 43 H 1.08998 * 108.73353 * 333.60838 * 16 15 14 44 44 H 1.08996 * 108.98551 * 79.36269 * 17 16 15 45 45 H 1.09002 * 108.98224 * 198.08288 * 17 16 15 46 46 H 1.09003 * 109.47015 * 53.95356 * 19 18 17 47 47 H 1.09000 * 109.47522 * 173.95215 * 19 18 17 48 48 H 0.97001 * 119.99608 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.71667 * 333.47503 * 28 18 17 50 50 H 1.08995 * 109.72244 * 212.82155 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 7 4.1298 0.8912 1.2032 7 8 4.2217 1.9436 -0.7477 8 7 1.6525 2.0974 -1.2518 9 6 0.8105 3.2969 -1.3326 10 6 1.0239 3.8572 -2.7562 11 6 1.4472 2.5901 -3.5343 12 6 2.0247 1.6787 -2.4737 13 8 2.7181 0.7084 -2.6942 14 6 2.0391 4.9097 -2.8010 15 8 1.6375 6.0593 -2.0216 16 6 0.7221 6.8793 -2.6919 17 6 -0.7463 6.5586 -2.3486 18 7 -0.9924 5.0962 -2.2730 19 6 -2.4319 4.8056 -2.2394 20 6 -3.0215 5.3352 -0.9576 21 1 -2.3899 5.8371 -0.2396 22 6 -4.3673 5.1790 -0.7016 23 7 -4.8817 5.6408 0.4172 24 14 -5.4596 4.3102 -1.9433 25 1 -5.4876 2.8557 -1.6456 26 1 -6.8369 4.8592 -1.8603 27 1 -4.9225 4.5253 -3.3109 28 6 -0.3353 4.3323 -3.3028 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.5861 0.4916 1.9002 35 1 5.0965 0.8920 1.2828 36 1 1.1211 4.0300 -0.5883 37 1 -0.2360 3.0304 -1.1852 38 1 2.2038 2.8351 -4.2797 39 1 0.5816 2.1254 -4.0064 40 1 2.9761 4.5191 -2.4042 41 1 2.1908 5.2156 -3.8362 42 1 0.9242 7.9176 -2.4290 43 1 0.8634 6.7569 -3.7657 44 1 -0.9924 7.0097 -1.3875 45 1 -1.3915 6.9874 -3.1155 46 1 -2.9192 5.2846 -3.0886 47 1 -2.5864 3.7279 -2.2923 48 1 -5.8286 5.5312 0.5971 49 1 -0.1798 4.9576 -4.1820 50 1 -0.9468 3.4698 -3.5678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:31 Heat of formation + Delta-G solvation = -120.174231 kcal Electronic energy + Delta-G solvation = -32543.508824 eV Core-core repulsion = 28377.220987 eV Total energy + Delta-G solvation = -4166.287837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.33480 -40.72512 -39.60062 -37.46105 -37.25115 -36.21175 -34.66786 -34.43667 -32.91642 -30.85342 -29.89489 -28.56811 -28.16901 -26.96545 -25.69772 -23.71822 -23.35231 -22.42041 -21.59490 -20.59127 -20.08126 -18.86890 -18.60679 -17.95224 -17.60417 -17.41213 -17.12741 -16.83265 -16.31912 -16.03681 -16.02396 -15.69112 -15.50796 -15.19758 -15.05793 -14.85312 -14.45082 -14.33357 -14.23206 -14.18830 -13.76470 -13.65800 -13.53231 -13.12374 -12.93596 -12.85467 -12.74848 -12.43155 -12.37532 -12.24463 -11.98279 -11.91835 -11.71465 -11.60765 -11.55037 -11.29707 -11.08474 -10.72278 -10.67292 -10.62227 -10.47488 -9.63910 -8.82036 -8.21147 -6.23187 1.38646 1.40226 1.49208 1.58527 1.61466 1.96966 2.38821 2.62291 2.77773 3.12520 3.17433 3.42401 3.65789 3.75592 3.81429 3.86487 3.91343 4.03333 4.15249 4.23820 4.29806 4.33169 4.43100 4.50430 4.57554 4.67812 4.69550 4.71192 4.75206 4.79112 4.84145 4.87568 4.94745 4.99083 5.04893 5.11341 5.15134 5.24235 5.31644 5.37233 5.58630 5.61372 5.89023 6.07016 6.18430 6.32377 6.41576 6.49127 6.81334 6.85225 7.22685 7.35101 7.40463 8.95346 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.004246 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.205405 B = 6592.689585 C = 7696.467104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.131 3.869 4 H 0.133 0.867 5 C 0.504 3.496 6 N -0.833 5.833 7 O -0.573 6.573 8 N -0.601 5.601 9 C 0.145 3.855 10 C -0.085 4.085 11 C -0.135 4.135 12 C 0.520 3.480 13 O -0.567 6.567 14 C 0.080 3.920 15 O -0.375 6.375 16 C 0.065 3.935 17 C 0.047 3.953 18 N -0.546 5.546 19 C 0.178 3.822 20 C -0.505 4.505 21 H 0.038 0.962 22 C 0.010 3.990 23 N -0.950 5.950 24 Si 0.940 3.060 25 H -0.267 1.267 26 H -0.289 1.289 27 H -0.249 1.249 28 C 0.073 3.927 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.418 0.582 35 H 0.408 0.592 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.037 0.963 46 H -0.012 1.012 47 H 0.031 0.969 48 H 0.264 0.736 49 H 0.058 0.942 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.746 -8.188 -3.886 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.024 3.976 4 H 0.151 0.849 5 C 0.288 3.712 6 N -0.398 5.398 7 O -0.452 6.452 8 N -0.334 5.334 9 C 0.023 3.977 10 C -0.087 4.087 11 C -0.175 4.175 12 C 0.310 3.690 13 O -0.447 6.447 14 C 0.004 3.996 15 O -0.293 6.293 16 C -0.013 4.013 17 C -0.080 4.080 18 N -0.270 5.270 19 C 0.051 3.949 20 C -0.543 4.543 21 H 0.057 0.943 22 C -0.187 4.187 23 N -0.591 5.591 24 Si 0.764 3.236 25 H -0.192 1.192 26 H -0.216 1.216 27 H -0.173 1.173 28 C -0.056 4.056 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.250 0.750 35 H 0.240 0.760 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.005 0.995 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.487 -8.434 -3.876 17.206 hybrid contribution -1.229 0.000 -0.396 1.291 sum 13.258 -8.434 -4.272 16.284 Atomic orbital electron populations 1.21699 0.94086 1.02447 1.02060 1.21829 0.97400 0.92866 1.04033 1.21134 0.90952 0.96946 0.88536 0.84897 1.21156 0.91399 0.76948 0.81716 1.43596 1.12049 1.61317 1.22873 1.90720 1.66182 1.46754 1.41503 1.48160 1.50498 1.29624 1.05108 1.21905 0.94061 0.84301 0.97409 1.21007 0.97266 0.95230 0.95207 1.22474 1.03922 0.93960 0.97194 1.21124 0.78300 0.84493 0.85098 1.90631 1.39528 1.30060 1.84437 1.21506 0.95748 0.85661 0.96657 1.87826 1.60529 1.36565 1.44369 1.22452 0.87006 0.95090 0.96719 1.22969 0.96676 0.87831 1.00564 1.60202 1.11614 1.07441 1.47746 1.20000 0.84658 0.95713 0.94485 1.21251 0.93283 1.36113 1.03670 0.94337 1.25761 0.99555 0.96371 0.97006 1.70056 1.13556 1.48823 1.26668 0.85829 0.77921 0.79246 0.80590 1.19186 1.21559 1.17268 1.21951 0.93160 0.98147 0.92387 0.91253 0.91524 0.94295 0.92397 0.87418 0.75012 0.76010 0.91341 0.90664 0.86659 0.85797 0.90259 0.89980 0.88470 0.91515 0.93201 0.94459 0.99473 0.95083 0.92739 0.92416 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.80 71.99 0.71 -2.31 16 2 C -0.12 -2.48 5.30 30.60 0.16 -2.32 16 3 C 0.13 3.10 2.67 44.25 0.12 3.22 16 4 H 0.13 2.64 8.07 -2.39 -0.02 2.62 16 5 C 0.50 12.92 7.13 87.66 0.62 13.55 16 6 N -0.83 -12.48 8.74 -173.53 -1.52 -14.00 16 7 O -0.57 -20.45 15.73 10.97 0.17 -20.28 16 8 N -0.60 -16.89 2.08 -798.21 -1.66 -18.54 16 9 C 0.15 4.26 5.65 86.83 0.49 4.75 16 10 C -0.09 -2.16 0.61 -52.86 -0.03 -2.19 16 11 C -0.14 -3.17 5.96 30.58 0.18 -2.99 16 12 C 0.52 15.95 6.68 87.90 0.59 16.53 16 13 O -0.57 -21.14 15.35 10.94 0.17 -20.97 16 14 C 0.08 2.00 4.92 69.92 0.34 2.34 16 15 O -0.38 -11.02 10.02 -140.63 -1.41 -12.43 16 16 C 0.07 1.70 6.06 72.38 0.44 2.14 16 17 C 0.05 1.60 5.47 86.39 0.47 2.07 16 18 N -0.55 -19.36 2.93 -899.31 -2.63 -21.99 16 19 C 0.18 7.61 3.70 85.56 0.32 7.93 16 20 C -0.50 -27.11 9.21 25.60 0.24 -26.88 16 21 H 0.04 2.35 7.38 -2.91 -0.02 2.33 16 22 C 0.01 0.55 5.47 84.65 0.46 1.02 16 23 N -0.95 -57.32 13.96 21.45 0.30 -57.02 16 24 Si 0.94 41.71 27.47 68.60 1.88 43.59 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.25 -10.17 6.54 99.48 0.65 -9.52 16 28 C 0.07 1.96 4.24 87.17 0.37 2.33 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.04 0.97 7.75 -2.39 -0.02 0.95 16 32 H 0.06 1.52 6.62 -2.39 -0.02 1.50 16 33 H 0.11 1.38 7.43 -2.39 -0.02 1.37 16 34 H 0.42 3.19 8.19 -92.70 -0.76 2.43 16 35 H 0.41 5.38 8.93 -92.71 -0.83 4.55 16 36 H 0.07 2.25 7.55 -2.39 -0.02 2.23 16 37 H 0.08 2.46 7.38 -2.39 -0.02 2.44 16 38 H 0.12 2.34 7.92 -2.39 -0.02 2.32 16 39 H 0.12 2.49 7.35 -2.39 -0.02 2.47 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 1.59 7.48 -2.38 -0.02 1.57 16 42 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.07 1.39 6.57 -2.39 -0.02 1.37 16 44 H 0.05 2.03 7.24 -2.39 -0.02 2.02 16 45 H 0.04 1.24 7.93 -2.39 -0.02 1.22 16 46 H -0.01 -0.53 7.04 -2.39 -0.02 -0.55 16 47 H 0.03 1.29 7.07 -2.39 -0.02 1.28 16 48 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 49 H 0.06 1.34 6.91 -2.39 -0.02 1.32 16 50 H 0.08 2.06 6.67 -2.39 -0.02 2.05 16 Total: -1.00 -78.35 382.24 0.11 -78.24 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.67 Total: 24.22 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 5.48 Total: 19.18 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -5.51 Total: -111.55 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -1.07 Total: -53.68 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.59 kcal Total: -78.35 0.11 -78.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.935 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds