Wall clock time and date at job start Wed Apr 1 2020 00:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47554 * 2 1 4 4 H 1.09004 * 109.47116 * 54.99829 * 3 2 1 5 5 C 1.50699 * 109.47463 * 174.99708 * 3 2 1 6 6 N 1.34780 * 119.99930 * 300.00677 * 5 3 2 7 7 O 1.21283 * 120.00082 * 120.00097 * 5 3 2 8 8 N 1.46500 * 109.47286 * 295.00173 * 3 2 1 9 9 C 1.46776 * 124.34982 * 119.99899 * 8 3 2 10 10 C 1.54441 * 105.47922 * 196.66637 * 9 8 3 11 11 C 1.54658 * 101.78813 * 334.62419 * 10 9 8 12 12 C 1.34454 * 124.34967 * 299.69710 * 8 3 2 13 13 O 1.21281 * 124.93794 * 359.95119 * 12 8 3 14 14 C 1.46275 * 112.73258 * 95.34316 * 10 9 8 15 15 O 1.44610 * 111.20938 * 182.60545 * 14 10 9 16 16 C 1.39979 * 112.94326 * 280.83089 * 15 14 10 17 17 C 1.54156 * 113.28694 * 94.38411 * 16 15 14 18 18 N 1.48478 * 111.98237 * 318.68596 * 17 16 15 19 19 C 1.46898 * 111.00070 * 192.48892 * 18 17 16 20 20 C 1.50701 * 109.47131 * 293.94888 * 19 18 17 21 21 H 1.07999 * 119.99962 * 0.02562 * 20 19 18 22 22 C 1.37872 * 119.99883 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00408 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99893 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47123 * 60.00050 * 24 22 20 26 26 H 1.48503 * 109.47149 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46929 * 299.99903 * 24 22 20 28 28 C 1.44076 * 114.14667 * 318.84264 * 18 17 16 29 29 H 1.09004 * 109.46872 * 59.99814 * 1 2 3 30 30 H 1.08995 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46701 * 300.00115 * 1 2 3 32 32 H 1.08998 * 109.46701 * 239.99885 * 2 1 3 33 33 H 1.08996 * 109.47053 * 120.00468 * 2 1 3 34 34 H 0.97001 * 120.00013 * 359.97438 * 6 5 3 35 35 H 0.97005 * 119.99660 * 179.97438 * 6 5 3 36 36 H 1.08997 * 110.24149 * 315.66645 * 9 8 3 37 37 H 1.08994 * 110.24273 * 77.66048 * 9 8 3 38 38 H 1.08999 * 110.48851 * 143.47714 * 11 10 9 39 39 H 1.08997 * 110.48738 * 265.99615 * 11 10 9 40 40 H 1.08999 * 109.12837 * 303.05214 * 14 10 9 41 41 H 1.09003 * 109.12670 * 62.22195 * 14 10 9 42 42 H 1.08993 * 108.72425 * 215.36814 * 16 15 14 43 43 H 1.09008 * 108.72036 * 333.40565 * 16 15 14 44 44 H 1.09004 * 108.98351 * 79.33232 * 17 16 15 45 45 H 1.09008 * 108.97753 * 198.04073 * 17 16 15 46 46 H 1.08999 * 109.47418 * 53.95435 * 19 18 17 47 47 H 1.09004 * 109.46579 * 173.95425 * 19 18 17 48 48 H 0.97004 * 120.00064 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.73258 * 333.51373 * 28 18 17 50 50 H 1.09002 * 109.72710 * 212.82970 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 7 4.1298 0.8909 1.2032 7 8 4.2218 1.9434 -0.7476 8 7 1.6526 2.0975 -1.2518 9 6 0.8077 3.2950 -1.3328 10 6 0.3269 3.3617 -2.7989 11 6 1.4474 2.5900 -3.5344 12 6 2.0299 1.6823 -2.4737 13 8 2.7347 0.7201 -2.6934 14 6 -0.9895 2.7533 -2.9903 15 8 -1.3806 2.7794 -4.3823 16 6 -1.8666 4.0275 -4.7892 17 6 -0.7864 4.9240 -5.4262 18 7 0.5031 4.8459 -4.6944 19 6 1.4180 5.9116 -5.1246 20 6 1.8081 5.6885 -6.5631 21 1 1.4153 4.8401 -7.1037 22 6 2.6664 6.5674 -7.1889 23 7 3.1452 7.6003 -6.5304 24 14 3.1494 6.2912 -8.9721 25 1 1.9327 6.3107 -9.8232 26 1 4.0754 7.3678 -9.4066 27 1 3.8247 4.9752 -9.1039 28 6 0.3669 4.8301 -3.2602 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5861 0.4919 1.9004 35 1 5.0966 0.8917 1.2827 36 1 -0.0448 3.2012 -0.6602 37 1 1.3884 4.1836 -1.0854 38 1 1.0319 2.0024 -4.3531 39 1 2.2045 3.2799 -3.9070 40 1 -0.9583 1.7192 -2.6473 41 1 -1.7255 3.3024 -2.4030 42 1 -2.6650 3.8724 -5.5148 43 1 -2.2808 4.5414 -3.9217 44 1 -0.6281 4.6099 -6.4579 45 1 -1.1349 5.9569 -5.4212 46 1 0.9218 6.8773 -5.0283 47 1 2.3110 5.8980 -4.4997 48 1 3.7494 8.2185 -6.9706 49 1 -0.5573 5.3315 -2.9728 50 1 1.2179 5.3361 -2.8042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:36 Heat of formation + Delta-G solvation = -95.615857 kcal Electronic energy + Delta-G solvation = -32250.111212 eV Core-core repulsion = 28084.888306 eV Total energy + Delta-G solvation = -4165.222906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.18124 -39.62365 -38.34327 -36.21175 -35.79900 -35.08715 -33.65707 -32.50338 -31.87370 -29.02531 -28.41628 -27.49865 -26.77849 -25.77642 -24.15589 -22.59129 -22.30045 -21.35653 -20.17288 -19.45409 -18.94902 -17.72941 -17.13728 -16.53611 -16.22918 -16.04751 -15.90305 -15.52644 -15.35099 -14.81489 -14.52841 -14.38197 -14.31149 -14.07963 -13.72597 -13.33459 -13.22485 -13.09988 -12.97038 -12.82981 -12.61818 -12.23675 -12.01578 -11.91596 -11.61054 -11.43440 -11.39826 -11.14667 -10.92402 -10.87790 -10.72736 -10.49464 -10.45726 -10.27185 -10.04942 -9.80405 -9.78585 -9.25898 -9.24264 -9.16624 -8.60599 -8.39205 -7.16077 -5.99328 -4.00457 2.55289 2.79473 3.04522 3.38060 3.42004 3.46139 3.49661 3.93264 4.41825 4.46678 4.60338 4.65183 4.68571 4.70576 4.89417 4.94582 5.04634 5.08612 5.22993 5.33920 5.36190 5.36524 5.40974 5.49594 5.52417 5.61387 5.63287 5.75040 5.84210 5.88535 5.97388 5.99123 6.05864 6.11809 6.29182 6.46772 6.55103 6.66872 6.70013 6.74300 7.15548 7.27238 7.29791 7.31169 7.47886 7.85772 8.11873 8.16517 8.17807 8.55864 8.59525 9.07272 9.64403 11.11237 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.003704 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.184485 B = 7556.806753 C = 8832.358085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.144 3.856 4 H 0.111 0.889 5 C 0.502 3.498 6 N -0.859 5.859 7 O -0.510 6.510 8 N -0.612 5.612 9 C 0.119 3.881 10 C -0.101 4.101 11 C -0.110 4.110 12 C 0.527 3.473 13 O -0.525 6.525 14 C 0.085 3.915 15 O -0.356 6.356 16 C 0.060 3.940 17 C 0.046 3.954 18 N -0.542 5.542 19 C 0.200 3.800 20 C -0.506 4.506 21 H 0.064 0.936 22 C 0.056 3.944 23 N -0.900 5.900 24 Si 0.897 3.103 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.275 1.275 28 C 0.076 3.924 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.398 0.602 35 H 0.401 0.599 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.035 0.965 46 H -0.010 1.010 47 H 0.030 0.970 48 H 0.261 0.739 49 H 0.030 0.970 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 -11.575 19.614 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.036 3.964 4 H 0.128 0.872 5 C 0.284 3.716 6 N -0.424 5.424 7 O -0.383 6.383 8 N -0.347 5.347 9 C -0.005 4.005 10 C -0.103 4.103 11 C -0.150 4.150 12 C 0.317 3.683 13 O -0.400 6.400 14 C 0.008 3.992 15 O -0.273 6.273 16 C -0.018 4.018 17 C -0.081 4.081 18 N -0.267 5.267 19 C 0.075 3.925 20 C -0.545 4.545 21 H 0.082 0.918 22 C -0.145 4.145 23 N -0.540 5.540 24 Si 0.725 3.275 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.201 1.201 28 C -0.054 4.054 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.226 0.774 35 H 0.232 0.768 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.053 0.947 46 H 0.008 0.992 47 H 0.048 0.952 48 H 0.071 0.929 49 H 0.049 0.951 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.850 -12.143 18.566 23.884 hybrid contribution 0.261 0.969 -0.014 1.003 sum -8.588 -11.174 18.552 23.298 Atomic orbital electron populations 1.21727 0.94501 1.02076 1.02106 1.21893 0.97282 0.94228 1.03997 1.20769 0.91415 0.95714 0.88472 0.87165 1.20998 0.91226 0.77762 0.81614 1.43824 1.11406 1.63349 1.23862 1.90835 1.65062 1.43422 1.38940 1.48031 1.52235 1.29578 1.04896 1.22193 0.93722 0.87648 0.96900 1.21145 0.96694 0.98982 0.93447 1.22176 0.98385 0.98124 0.96334 1.21334 0.78596 0.84369 0.84037 1.90647 1.36964 1.28696 1.83716 1.21388 0.93547 1.00849 0.83384 1.87817 1.83259 1.30618 1.25634 1.22464 0.95589 0.85213 0.98574 1.22954 0.88701 0.96782 0.99712 1.60554 1.12086 1.51472 1.02566 1.19791 0.90005 0.86134 0.96560 1.21134 1.27263 1.09933 0.96150 0.91801 1.24970 0.96128 0.95138 0.98276 1.69940 1.32862 1.14287 1.36901 0.86580 0.78327 0.77828 0.84814 1.20332 1.21474 1.20082 1.21758 1.00282 0.92101 0.91259 0.92158 0.92274 0.92680 0.89518 0.90811 0.77426 0.76800 0.90785 0.90611 0.87589 0.86216 0.89779 0.93004 0.90157 0.94352 0.90015 0.94716 0.99249 0.95176 0.92930 0.95146 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.80 37.16 0.36 -0.70 16 2 C -0.14 -1.19 5.31 -26.73 -0.14 -1.33 16 3 C 0.14 1.47 2.67 -69.09 -0.18 1.29 16 4 H 0.11 0.74 8.07 -51.93 -0.42 0.32 16 5 C 0.50 6.39 7.12 -10.98 -0.08 6.32 16 6 N -0.86 -6.60 8.74 31.22 0.27 -6.33 16 7 O -0.51 -9.63 15.69 -9.83 -0.15 -9.78 16 8 N -0.61 -7.99 2.08 -166.18 -0.35 -8.33 16 9 C 0.12 1.32 6.42 -3.14 -0.02 1.30 16 10 C -0.10 -1.37 0.61 -155.57 -0.09 -1.47 16 11 C -0.11 -1.92 5.17 -26.73 -0.14 -2.06 16 12 C 0.53 9.17 6.68 -10.85 -0.07 9.10 16 13 O -0.53 -11.01 15.34 -9.83 -0.15 -11.16 16 14 C 0.08 1.03 4.93 33.96 0.17 1.20 16 15 O -0.36 -5.36 10.01 -32.87 -0.33 -5.69 16 16 C 0.06 0.84 6.05 37.76 0.23 1.07 16 17 C 0.05 0.84 5.46 -2.35 -0.01 0.82 16 18 N -0.54 -10.81 2.89 -235.64 -0.68 -11.49 16 19 C 0.20 5.00 4.63 -4.98 -0.02 4.97 16 20 C -0.51 -14.04 8.66 -34.44 -0.30 -14.34 16 21 H 0.06 1.77 7.14 -52.49 -0.37 1.40 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 23 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 24 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 28 C 0.08 1.22 4.26 -4.83 -0.02 1.20 16 29 H 0.06 0.53 7.05 -51.93 -0.37 0.16 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 1.09 6.66 -51.93 -0.35 0.75 16 33 H 0.07 0.43 7.43 -51.93 -0.39 0.05 16 34 H 0.40 1.53 8.19 -40.82 -0.33 1.20 16 35 H 0.40 2.91 8.93 -40.82 -0.36 2.55 16 36 H 0.07 0.57 7.92 -51.93 -0.41 0.16 16 37 H 0.08 0.87 7.33 -51.93 -0.38 0.49 16 38 H 0.11 1.98 7.54 -51.93 -0.39 1.59 16 39 H 0.12 2.49 7.37 -51.93 -0.38 2.11 16 40 H 0.08 0.95 7.43 -51.93 -0.39 0.56 16 41 H 0.05 0.51 7.48 -51.93 -0.39 0.12 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.04 0.47 6.58 -51.92 -0.34 0.13 16 44 H 0.08 1.63 7.24 -51.93 -0.38 1.25 16 45 H 0.03 0.64 7.93 -51.92 -0.41 0.22 16 46 H -0.01 -0.27 7.98 -51.93 -0.41 -0.69 16 47 H 0.03 0.82 7.65 -51.93 -0.40 0.42 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.03 0.44 6.90 -51.93 -0.36 0.08 16 50 H 0.07 1.24 6.66 -51.93 -0.35 0.89 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -36.94 384.32 -8.28 -45.22 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.98 Total: 1.97 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -0.42 Total: 8.86 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.02 Total: -52.22 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.63 Total: -26.64 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.94 -8.28 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.398 kcal (2) G-P(sol) polarization free energy of solvation -36.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds