Wall clock time and date at job start Tue Mar 31 2020 23:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00165 * 2 1 4 4 O 1.21280 * 119.99950 * 354.98140 * 3 2 1 5 5 C 1.50700 * 120.00182 * 174.97208 * 3 2 1 6 6 C 1.53005 * 109.46909 * 83.98986 * 5 3 2 7 7 C 1.52994 * 109.47408 * 203.99153 * 5 3 2 8 8 N 1.46503 * 109.47036 * 323.99510 * 5 3 2 9 9 C 1.46203 * 118.77587 * 123.80269 * 8 5 3 10 10 C 1.52606 * 109.84862 * 162.29425 * 9 8 5 11 11 C 1.54117 * 110.31949 * 286.53436 * 10 9 8 12 12 C 1.55044 * 102.80411 * 218.99885 * 11 10 9 13 13 N 1.48580 * 103.28621 * 37.02309 * 12 11 10 14 14 C 1.46897 * 110.99859 * 200.55061 * 13 12 11 15 15 C 1.50701 * 109.47539 * 290.12721 * 14 13 12 16 16 H 1.07995 * 119.99779 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00169 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00009 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00309 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46595 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46881 * 119.99818 * 19 17 15 22 22 H 1.48499 * 109.47246 * 240.00216 * 19 17 15 23 23 C 1.48032 * 105.83444 * 321.07962 * 13 12 11 24 24 O 1.42576 * 109.96182 * 48.08956 * 10 9 8 25 25 C 1.43031 * 113.17076 * 293.07072 * 24 10 9 26 26 C 1.33842 * 118.77533 * 304.06450 * 8 5 3 27 27 O 1.21284 * 118.69574 * 2.38598 * 26 8 5 28 28 H 1.08992 * 109.47271 * 59.99461 * 1 2 3 29 29 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46724 * 299.99889 * 1 2 3 31 31 H 0.97001 * 120.00016 * 179.72684 * 2 1 3 32 32 H 1.09001 * 109.46758 * 59.99878 * 6 5 3 33 33 H 1.08993 * 109.47219 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47174 * 300.00348 * 6 5 3 35 35 H 1.08999 * 109.47261 * 60.00244 * 7 5 3 36 36 H 1.08998 * 109.46915 * 180.02562 * 7 5 3 37 37 H 1.09009 * 109.47073 * 300.00240 * 7 5 3 38 38 H 1.09001 * 109.38796 * 282.60509 * 9 8 5 39 39 H 1.09000 * 109.39415 * 42.31320 * 9 8 5 40 40 H 1.08991 * 110.75077 * 337.33307 * 11 10 9 41 41 H 1.09004 * 110.74383 * 100.67454 * 11 10 9 42 42 H 1.09009 * 110.65352 * 155.47207 * 12 11 10 43 43 H 1.08999 * 110.66026 * 278.56838 * 12 11 10 44 44 H 1.08994 * 109.47187 * 50.12970 * 14 13 12 45 45 H 1.08999 * 109.46971 * 170.12784 * 14 13 12 46 46 H 0.97002 * 120.00023 * 179.97438 * 18 17 15 47 47 H 1.09007 * 109.97520 * 265.87456 * 23 13 12 48 48 H 1.08995 * 109.98278 * 144.58765 * 23 13 12 49 49 H 1.08995 * 109.40328 * 288.52585 * 25 24 10 50 50 H 1.09004 * 109.33008 * 168.74182 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2155 -0.0919 5 6 3.6416 1.1697 0.1144 6 6 4.2587 0.9568 -1.2694 7 6 4.1078 2.5128 0.6796 8 7 4.0650 0.0898 1.0093 9 6 5.0139 -0.9051 0.5119 10 6 5.6456 -1.6502 1.6844 11 6 6.6595 -0.7445 2.4102 12 6 7.8093 -1.7250 2.7571 13 7 7.8616 -2.6222 1.5739 14 6 8.5321 -3.8874 1.9018 15 6 10.0013 -3.6350 2.1224 16 1 10.3974 -2.6347 2.0288 17 6 10.8399 -4.6812 2.4438 18 7 10.3577 -5.8995 2.5573 19 14 12.6613 -4.3685 2.7165 20 1 12.9486 -2.9234 2.5306 21 1 13.0316 -4.7728 4.0966 22 1 13.4512 -5.1604 1.7398 23 6 6.4535 -2.8542 1.1804 24 8 4.6327 -2.0760 2.5930 25 6 3.9782 -0.9903 3.2553 26 6 3.5647 0.0477 2.2499 27 8 2.7447 0.8798 2.5758 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.9500 -0.8400 0.0040 32 1 3.9436 1.7602 -1.9352 33 1 5.3455 0.9590 -1.1868 34 1 3.9265 -0.0001 -1.6721 35 1 3.6682 2.6644 1.6654 36 1 5.1947 2.5147 0.7618 37 1 3.7928 3.3163 0.0137 38 1 4.4919 -1.6129 -0.1320 39 1 5.7954 -0.4054 -0.0606 40 1 7.0130 0.0467 1.7492 41 1 6.2229 -0.3254 3.3168 42 1 8.7506 -1.1878 2.8742 43 1 7.5736 -2.2907 3.6585 44 1 8.0951 -4.3058 2.8085 45 1 8.4038 -4.5905 1.0789 46 1 10.9478 -6.6356 2.7830 47 1 6.0840 -3.7701 1.6419 48 1 6.3770 -2.9264 0.0955 49 1 4.6605 -0.5428 3.9779 50 1 3.0953 -1.3638 3.7741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:52 Heat of formation + Delta-G solvation = -84.885999 kcal Electronic energy + Delta-G solvation = -32058.831612 eV Core-core repulsion = 27894.073988 eV Total energy + Delta-G solvation = -4164.757624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.79087 -39.94513 -38.66600 -36.57703 -36.54679 -34.81269 -33.13885 -32.49613 -30.90610 -29.73923 -28.19194 -27.67069 -27.32395 -26.61650 -24.85303 -23.01009 -22.68943 -21.80828 -20.43580 -19.99302 -18.97600 -17.92942 -17.67035 -16.52583 -16.48454 -16.24402 -15.95707 -15.58134 -15.12564 -15.05235 -14.71986 -14.64183 -14.26043 -14.11510 -13.80898 -13.54517 -13.46694 -13.22521 -12.81540 -12.67239 -12.56315 -12.49686 -12.42933 -12.35875 -12.19158 -12.04651 -11.69708 -11.60112 -11.52695 -11.11410 -10.97105 -10.88035 -10.64895 -10.49242 -10.37183 -10.15523 -9.95614 -9.48640 -9.30607 -9.25471 -8.98042 -8.51340 -7.54663 -6.10020 -4.11770 2.17168 2.23326 2.68713 3.01985 3.26423 3.34239 3.38071 3.45540 4.01935 4.34061 4.36020 4.38444 4.51720 4.53986 4.64716 4.71933 4.91738 4.98180 5.03655 5.08045 5.13504 5.17934 5.26938 5.28130 5.32611 5.36436 5.46604 5.53838 5.54147 5.57758 5.66763 5.72290 5.84893 5.88175 6.02316 6.11679 6.14627 6.19619 6.38253 6.43395 6.75629 6.98401 7.09056 7.19531 7.24607 7.66520 7.76192 7.86362 8.02671 8.03817 8.38268 8.95857 9.53074 11.01036 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024316 B = 0.002695 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.216345 B =10385.297168 C =10563.857095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.731 5.731 3 C 0.530 3.470 4 O -0.533 6.533 5 C 0.154 3.846 6 C -0.155 4.155 7 C -0.147 4.147 8 N -0.598 5.598 9 C 0.094 3.906 10 C 0.093 3.907 11 C -0.153 4.153 12 C 0.054 3.946 13 N -0.510 5.510 14 C 0.184 3.816 15 C -0.508 4.508 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.052 3.948 24 O -0.356 6.356 25 C 0.048 3.952 26 C 0.489 3.511 27 O -0.530 6.530 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.399 0.601 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.043 0.957 44 H -0.003 1.003 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.060 0.940 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 10.559 -5.360 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.382 5.382 3 C 0.315 3.685 4 O -0.408 6.408 5 C 0.066 3.934 6 C -0.213 4.213 7 C -0.206 4.206 8 N -0.334 5.334 9 C -0.028 4.028 10 C 0.052 3.948 11 C -0.191 4.191 12 C -0.074 4.074 13 N -0.235 5.235 14 C 0.059 3.941 15 C -0.546 4.546 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.077 4.077 24 O -0.274 6.274 25 C -0.032 4.032 26 C 0.278 3.722 27 O -0.407 6.407 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.233 0.767 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.061 0.939 44 H 0.014 0.986 45 H 0.050 0.950 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.112 0.888 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.039 11.589 -5.595 20.564 hybrid contribution 0.839 -0.724 0.873 1.410 sum -15.200 10.866 -4.723 19.272 Atomic orbital electron populations 1.21501 0.79561 1.02059 1.02211 1.45680 1.07722 1.08748 1.76039 1.20478 0.89359 0.83694 0.74956 1.90678 1.69610 1.31441 1.49116 1.20702 0.91167 0.89644 0.91875 1.22158 1.02380 1.03523 0.93238 1.22010 1.01139 0.94025 1.03393 1.47874 1.45351 1.27644 1.12561 1.22358 0.92698 0.90381 0.97386 1.22461 0.87655 0.96180 0.88455 1.23211 0.96859 0.98582 1.00434 1.23015 0.97280 0.93937 0.93181 1.65078 1.09579 1.17218 1.31623 1.19924 0.94087 0.84747 0.95361 1.21128 0.92176 0.94612 1.46730 0.91835 1.24988 0.99040 0.95033 0.95526 1.69962 1.35490 0.99454 1.48785 0.86444 0.84923 0.78389 0.77685 1.19647 1.21107 1.20975 1.22728 0.89631 0.94681 1.00671 1.88181 1.51188 1.30019 1.58004 1.22823 0.99306 0.87378 0.93649 1.21120 0.81220 0.86876 0.83031 1.90769 1.32561 1.40061 1.77268 0.92292 0.90814 0.92254 0.76716 0.90082 0.89795 0.91186 0.90454 0.91559 0.90526 0.90455 0.88246 0.89956 0.91038 0.89909 0.93863 0.98569 0.94991 0.92900 0.92212 0.89706 0.88801 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.71 59.85 0.64 1.45 16 2 N -0.73 -7.57 5.27 -67.08 -0.35 -7.92 16 3 C 0.53 6.74 4.86 -10.99 -0.05 6.69 16 4 O -0.53 -8.65 16.09 5.56 0.09 -8.56 16 5 C 0.15 1.61 0.95 -132.97 -0.13 1.48 16 6 C -0.16 -1.17 7.37 37.16 0.27 -0.90 16 7 C -0.15 -1.65 7.96 37.15 0.30 -1.35 16 8 N -0.60 -6.13 2.13 -161.00 -0.34 -6.47 16 9 C 0.09 0.89 3.95 -4.40 -0.02 0.87 16 10 C 0.09 1.14 0.98 -89.97 -0.09 1.05 16 11 C -0.15 -1.97 5.85 -25.07 -0.15 -2.12 16 12 C 0.05 0.93 6.04 -1.81 -0.01 0.92 16 13 N -0.51 -9.78 5.26 -231.98 -1.22 -11.00 16 14 C 0.18 4.48 4.46 -4.98 -0.02 4.46 16 15 C -0.51 -13.56 8.82 -34.44 -0.30 -13.87 16 16 H 0.06 1.68 7.61 -52.49 -0.40 1.28 16 17 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 18 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 19 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.05 0.79 6.16 -2.94 -0.02 0.77 16 24 O -0.36 -4.52 10.31 -35.23 -0.36 -4.88 16 25 C 0.05 0.52 6.39 35.81 0.23 0.75 16 26 C 0.49 5.89 6.57 -11.59 -0.08 5.82 16 27 O -0.53 -7.98 13.88 5.55 0.08 -7.90 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.40 3.49 8.31 -40.82 -0.34 3.15 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.55 6.71 -51.93 -0.35 0.20 16 34 H 0.07 0.45 7.71 -51.93 -0.40 0.05 16 35 H 0.08 1.06 6.40 -51.93 -0.33 0.73 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.84 7.87 -51.92 -0.41 0.43 16 38 H 0.08 0.62 7.94 -51.93 -0.41 0.20 16 39 H 0.10 0.85 6.01 -51.93 -0.31 0.54 16 40 H 0.08 0.99 7.68 -51.93 -0.40 0.59 16 41 H 0.07 0.85 5.66 -51.93 -0.29 0.56 16 42 H 0.08 1.47 7.95 -51.92 -0.41 1.06 16 43 H 0.04 0.80 7.85 -51.93 -0.41 0.39 16 44 H 0.00 -0.09 7.89 -51.93 -0.41 -0.50 16 45 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.06 1.00 7.60 -51.92 -0.39 0.61 16 48 H 0.08 1.13 7.65 -51.93 -0.40 0.73 16 49 H 0.09 0.96 6.31 -51.93 -0.33 0.64 16 50 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -33.28 386.04 -8.19 -41.47 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.09 Total: 1.17 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 0.48 Total: 7.44 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -1.18 Total: -50.44 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.20 Total: -21.34 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.28 -8.19 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.416 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds