Wall clock time and date at job start Tue Mar 31 2020 23:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00165 * 2 1 4 4 O 1.21280 * 119.99950 * 354.98140 * 3 2 1 5 5 C 1.50700 * 120.00182 * 174.97208 * 3 2 1 6 6 C 1.53005 * 109.46909 * 83.98986 * 5 3 2 7 7 C 1.52994 * 109.47408 * 203.99153 * 5 3 2 8 8 N 1.46503 * 109.47036 * 323.99510 * 5 3 2 9 9 C 1.46203 * 118.77587 * 123.80269 * 8 5 3 10 10 C 1.52606 * 109.84862 * 162.29425 * 9 8 5 11 11 C 1.54117 * 110.31949 * 286.53436 * 10 9 8 12 12 C 1.55044 * 102.80411 * 218.99885 * 11 10 9 13 13 N 1.48580 * 103.28621 * 37.02309 * 12 11 10 14 14 C 1.46897 * 110.99859 * 200.55061 * 13 12 11 15 15 C 1.50701 * 109.47539 * 290.12721 * 14 13 12 16 16 H 1.07995 * 119.99779 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00169 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00009 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00309 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46595 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46881 * 119.99818 * 19 17 15 22 22 H 1.48499 * 109.47246 * 240.00216 * 19 17 15 23 23 C 1.48032 * 105.83444 * 321.07962 * 13 12 11 24 24 O 1.42576 * 109.96182 * 48.08956 * 10 9 8 25 25 C 1.43031 * 113.17076 * 293.07072 * 24 10 9 26 26 C 1.33842 * 118.77533 * 304.06450 * 8 5 3 27 27 O 1.21284 * 118.69574 * 2.38598 * 26 8 5 28 28 H 1.08992 * 109.47271 * 59.99461 * 1 2 3 29 29 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46724 * 299.99889 * 1 2 3 31 31 H 0.97001 * 120.00016 * 179.72684 * 2 1 3 32 32 H 1.09001 * 109.46758 * 59.99878 * 6 5 3 33 33 H 1.08993 * 109.47219 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47174 * 300.00348 * 6 5 3 35 35 H 1.08999 * 109.47261 * 60.00244 * 7 5 3 36 36 H 1.08998 * 109.46915 * 180.02562 * 7 5 3 37 37 H 1.09009 * 109.47073 * 300.00240 * 7 5 3 38 38 H 1.09001 * 109.38796 * 282.60509 * 9 8 5 39 39 H 1.09000 * 109.39415 * 42.31320 * 9 8 5 40 40 H 1.08991 * 110.75077 * 337.33307 * 11 10 9 41 41 H 1.09004 * 110.74383 * 100.67454 * 11 10 9 42 42 H 1.09009 * 110.65352 * 155.47207 * 12 11 10 43 43 H 1.08999 * 110.66026 * 278.56838 * 12 11 10 44 44 H 1.08994 * 109.47187 * 50.12970 * 14 13 12 45 45 H 1.08999 * 109.46971 * 170.12784 * 14 13 12 46 46 H 0.97002 * 120.00023 * 179.97438 * 18 17 15 47 47 H 1.09007 * 109.97520 * 265.87456 * 23 13 12 48 48 H 1.08995 * 109.98278 * 144.58765 * 23 13 12 49 49 H 1.08995 * 109.40328 * 288.52585 * 25 24 10 50 50 H 1.09004 * 109.33008 * 168.74182 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2155 -0.0919 5 6 3.6416 1.1697 0.1144 6 6 4.2587 0.9568 -1.2694 7 6 4.1078 2.5128 0.6796 8 7 4.0650 0.0898 1.0093 9 6 5.0139 -0.9051 0.5119 10 6 5.6456 -1.6502 1.6844 11 6 6.6595 -0.7445 2.4102 12 6 7.8093 -1.7250 2.7571 13 7 7.8616 -2.6222 1.5739 14 6 8.5321 -3.8874 1.9018 15 6 10.0013 -3.6350 2.1224 16 1 10.3974 -2.6347 2.0288 17 6 10.8399 -4.6812 2.4438 18 7 10.3577 -5.8995 2.5573 19 14 12.6613 -4.3685 2.7165 20 1 12.9486 -2.9234 2.5306 21 1 13.0316 -4.7728 4.0966 22 1 13.4512 -5.1604 1.7398 23 6 6.4535 -2.8542 1.1804 24 8 4.6327 -2.0760 2.5930 25 6 3.9782 -0.9903 3.2553 26 6 3.5647 0.0477 2.2499 27 8 2.7447 0.8798 2.5758 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.9500 -0.8400 0.0040 32 1 3.9436 1.7602 -1.9352 33 1 5.3455 0.9590 -1.1868 34 1 3.9265 -0.0001 -1.6721 35 1 3.6682 2.6644 1.6654 36 1 5.1947 2.5147 0.7618 37 1 3.7928 3.3163 0.0137 38 1 4.4919 -1.6129 -0.1320 39 1 5.7954 -0.4054 -0.0606 40 1 7.0130 0.0467 1.7492 41 1 6.2229 -0.3254 3.3168 42 1 8.7506 -1.1878 2.8742 43 1 7.5736 -2.2907 3.6585 44 1 8.0951 -4.3058 2.8085 45 1 8.4038 -4.5905 1.0789 46 1 10.9478 -6.6356 2.7830 47 1 6.0840 -3.7701 1.6419 48 1 6.3770 -2.9264 0.0955 49 1 4.6605 -0.5428 3.9779 50 1 3.0953 -1.3638 3.7741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:50 Heat of formation + Delta-G solvation = -111.111351 kcal Electronic energy + Delta-G solvation = -32059.968829 eV Core-core repulsion = 27894.073988 eV Total energy + Delta-G solvation = -4165.894841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.71636 -40.96338 -39.74936 -37.84361 -37.46022 -35.70365 -34.97570 -33.51996 -32.25306 -30.90484 -29.04467 -28.67509 -28.50641 -27.80545 -26.00659 -24.39068 -23.82293 -22.81838 -21.90680 -20.97006 -19.89807 -18.90431 -18.76242 -18.23139 -17.37929 -17.33803 -17.07452 -16.59878 -16.38921 -16.15455 -15.95570 -15.57608 -15.35341 -15.16029 -15.05024 -14.87989 -14.41830 -14.23217 -14.17797 -13.85848 -13.70938 -13.46762 -13.27240 -13.21915 -13.12489 -13.02675 -12.93809 -12.77867 -12.58930 -12.57343 -12.44983 -12.28549 -12.17691 -11.89323 -11.81320 -11.34610 -11.23519 -11.09139 -10.59890 -10.44222 -10.18337 -9.86319 -9.16430 -8.19042 -6.28323 1.25782 1.32956 1.43004 1.44263 1.56893 1.79424 2.21659 2.39610 2.49535 3.13380 3.14719 3.35365 3.50036 3.54687 3.59353 3.72043 3.76239 3.89990 4.10002 4.26157 4.31265 4.36582 4.39480 4.43929 4.53639 4.56928 4.60094 4.64560 4.70173 4.75210 4.77381 4.82300 4.84923 4.96440 4.97105 5.02703 5.11368 5.15196 5.19936 5.27358 5.28954 5.38153 5.65569 5.80753 6.02878 6.16040 6.23092 6.42090 6.51346 6.85975 6.87955 7.14427 7.41697 8.92492 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024316 B = 0.002695 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.216345 B =10385.297168 C =10563.857095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.723 5.723 3 C 0.522 3.478 4 O -0.578 6.578 5 C 0.155 3.845 6 C -0.153 4.153 7 C -0.144 4.144 8 N -0.588 5.588 9 C 0.097 3.903 10 C 0.100 3.900 11 C -0.141 4.141 12 C 0.050 3.950 13 N -0.514 5.514 14 C 0.200 3.800 15 C -0.520 4.520 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.279 1.279 23 C 0.050 3.950 24 O -0.368 6.368 25 C 0.050 3.950 26 C 0.490 3.510 27 O -0.563 6.563 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.039 0.961 31 H 0.409 0.591 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.020 0.980 44 H -0.037 1.037 45 H 0.009 0.991 46 H 0.264 0.736 47 H 0.039 0.961 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 11.205 -6.659 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.374 5.374 3 C 0.308 3.692 4 O -0.457 6.457 5 C 0.067 3.933 6 C -0.211 4.211 7 C -0.202 4.202 8 N -0.323 5.323 9 C -0.024 4.024 10 C 0.060 3.940 11 C -0.178 4.178 12 C -0.078 4.078 13 N -0.238 5.238 14 C 0.074 3.926 15 C -0.558 4.558 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.186 1.186 21 H -0.208 1.208 22 H -0.205 1.205 23 C -0.078 4.078 24 O -0.287 6.287 25 C -0.029 4.029 26 C 0.279 3.721 27 O -0.442 6.442 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.058 0.942 31 H 0.244 0.756 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.039 0.961 44 H -0.019 1.019 45 H 0.027 0.973 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.129 0.871 49 H 0.119 0.881 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.559 12.212 -6.912 20.953 hybrid contribution 0.621 -0.956 1.311 1.738 sum -14.938 11.256 -5.601 19.525 Atomic orbital electron populations 1.21603 0.78890 1.03906 1.01171 1.45699 1.08358 1.08612 1.74746 1.20947 0.90425 0.83571 0.74214 1.90654 1.70652 1.32997 1.51355 1.20740 0.89930 0.89167 0.93440 1.22214 1.03247 1.04527 0.91062 1.21967 1.02038 0.94595 1.01648 1.47815 1.44857 1.27588 1.11991 1.22440 0.93278 0.90561 0.96156 1.22286 0.87563 0.94751 0.89445 1.23166 0.95150 0.97936 1.01589 1.23004 0.98789 0.94236 0.91739 1.64952 1.12135 1.14649 1.32096 1.19535 0.93715 0.86571 0.92827 1.21468 0.93478 0.94598 1.46290 0.91780 1.25879 1.03747 0.94770 0.95242 1.70084 1.37193 1.00405 1.49831 0.85380 0.79260 0.78710 0.77552 1.18563 1.20807 1.20476 1.22795 0.87682 0.95275 1.02094 1.88173 1.51175 1.30927 1.58436 1.22916 0.99856 0.86782 0.93374 1.21260 0.80783 0.86497 0.83590 1.90777 1.34155 1.41347 1.77960 0.92408 0.87521 0.94243 0.75584 0.89915 0.87997 0.89571 0.93454 0.89676 0.90813 0.87876 0.86121 0.88035 0.89787 0.90853 0.96113 1.01903 0.97325 0.92756 0.94259 0.87136 0.88054 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.71 127.77 1.37 2.84 16 2 N -0.72 -13.71 5.27 -484.52 -2.56 -16.26 16 3 C 0.52 12.66 4.86 87.66 0.43 13.09 16 4 O -0.58 -18.81 16.09 -3.03 -0.05 -18.86 16 5 C 0.15 2.87 0.95 2.86 0.00 2.87 16 6 C -0.15 -1.73 7.37 71.98 0.53 -1.20 16 7 C -0.14 -3.01 7.96 71.98 0.57 -2.44 16 8 N -0.59 -10.30 2.13 -782.19 -1.67 -11.96 16 9 C 0.10 1.44 3.95 86.30 0.34 1.78 16 10 C 0.10 2.19 0.98 -10.38 -0.01 2.18 16 11 C -0.14 -3.28 5.85 31.67 0.19 -3.10 16 12 C 0.05 1.71 6.04 86.68 0.52 2.23 16 13 N -0.51 -19.50 5.26 -887.85 -4.67 -24.17 16 14 C 0.20 10.01 4.46 85.56 0.38 10.39 16 15 C -0.52 -28.08 8.82 25.60 0.23 -27.85 16 16 H 0.06 3.38 7.61 -2.91 -0.02 3.36 16 17 C 0.00 0.09 5.46 84.65 0.46 0.55 16 18 N -0.93 -54.68 13.29 21.45 0.28 -54.40 16 19 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 23 C 0.05 1.45 6.16 86.26 0.53 1.98 16 24 O -0.37 -8.63 10.31 -148.98 -1.54 -10.16 16 25 C 0.05 0.99 6.39 71.11 0.45 1.44 16 26 C 0.49 10.84 6.57 87.68 0.58 11.42 16 27 O -0.56 -16.53 13.88 -3.04 -0.04 -16.57 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.41 6.00 8.31 -92.71 -0.77 5.23 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 0.82 6.71 -2.39 -0.02 0.81 16 34 H 0.09 0.72 7.71 -2.39 -0.02 0.70 16 35 H 0.05 1.28 6.40 -2.39 -0.02 1.27 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.56 7.87 -2.38 -0.02 1.54 16 38 H 0.10 1.11 7.94 -2.39 -0.02 1.09 16 39 H 0.12 1.39 6.01 -2.39 -0.01 1.38 16 40 H 0.10 2.04 7.68 -2.39 -0.02 2.02 16 41 H 0.08 1.79 5.66 -2.38 -0.01 1.78 16 42 H 0.07 2.59 7.95 -2.38 -0.02 2.57 16 43 H 0.02 0.78 7.85 -2.39 -0.02 0.77 16 44 H -0.04 -2.04 7.89 -2.39 -0.02 -2.06 16 45 H 0.01 0.47 8.11 -2.39 -0.02 0.45 16 46 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 47 H 0.04 1.32 7.60 -2.38 -0.02 1.30 16 48 H 0.11 2.62 7.65 -2.39 -0.02 2.60 16 49 H 0.10 1.89 6.31 -2.39 -0.02 1.87 16 50 H 0.14 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -75.32 386.04 -1.45 -76.77 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.18 Total: 14.61 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 6.57 Total: 16.18 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -8.61 Total: -106.79 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -1.63 Total: -45.59 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -75.32 -1.45 -76.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.338 kcal (2) G-P(sol) polarization free energy of solvation -75.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds