Wall clock time and date at job start Tue Mar 31 2020 23:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 120.00152 * 2 1 4 4 O 1.21282 * 119.99615 * 4.68438 * 3 2 1 5 5 C 1.50701 * 120.00266 * 184.67849 * 3 2 1 6 6 C 1.52997 * 109.47214 * 193.24632 * 5 3 2 7 7 C 1.52999 * 109.46807 * 73.24856 * 5 3 2 8 8 N 1.46501 * 109.47066 * 313.24696 * 5 3 2 9 9 C 1.34315 * 119.40429 * 124.73085 * 8 5 3 10 10 O 1.21276 * 118.99597 * 2.02548 * 9 8 5 11 11 C 1.50282 * 122.01015 * 182.00026 * 9 8 5 12 12 O 1.42812 * 110.53863 * 341.43622 * 11 9 8 13 13 C 1.43405 * 113.35475 * 51.36751 * 12 11 9 14 14 C 1.45813 * 119.40894 * 304.71595 * 8 5 3 15 15 C 1.52992 * 114.23861 * 297.17397 * 14 8 5 16 16 N 1.47575 * 87.79878 * 88.33477 * 15 14 8 17 17 C 1.46907 * 110.99390 * 138.29794 * 16 15 14 18 18 C 1.53008 * 109.46857 * 169.99930 * 17 16 15 19 19 C 1.50701 * 109.46948 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99727 * 179.72810 * 19 18 17 22 22 N 1.31509 * 119.99985 * 0.27155 * 21 19 18 23 23 Si 1.86804 * 119.99839 * 180.27748 * 21 19 18 24 24 H 1.48497 * 109.47180 * 59.99539 * 23 21 19 25 25 H 1.48493 * 109.46993 * 179.97438 * 23 21 19 26 26 H 1.48509 * 109.46888 * 299.99623 * 23 21 19 27 27 C 1.47581 * 87.94316 * 26.56575 * 16 15 14 28 28 H 1.09001 * 109.47225 * 59.99950 * 1 2 3 29 29 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47241 * 299.99427 * 1 2 3 31 31 H 0.97003 * 119.99732 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47104 * 187.37948 * 6 5 3 33 33 H 1.09005 * 109.47128 * 307.38303 * 6 5 3 34 34 H 1.09004 * 109.47173 * 67.38063 * 6 5 3 35 35 H 1.09009 * 109.46998 * 293.33539 * 7 5 3 36 36 H 1.09001 * 109.47502 * 53.33467 * 7 5 3 37 37 H 1.08996 * 109.47229 * 173.34074 * 7 5 3 38 38 H 1.08996 * 109.26383 * 101.71023 * 11 9 8 39 39 H 1.08999 * 109.26141 * 221.16816 * 11 9 8 40 40 H 1.09003 * 109.70675 * 174.89184 * 13 12 11 41 41 H 1.08994 * 109.70814 * 54.27375 * 13 12 11 42 42 H 1.08998 * 113.49845 * 333.60724 * 15 14 8 43 43 H 1.08996 * 113.49375 * 203.07146 * 15 14 8 44 44 H 1.08994 * 109.47003 * 50.00170 * 17 16 15 45 45 H 1.08998 * 109.47359 * 290.00067 * 17 16 15 46 46 H 1.09003 * 109.46528 * 60.00366 * 18 17 16 47 47 H 1.08995 * 109.46892 * 299.99839 * 18 17 16 48 48 H 0.97005 * 120.00014 * 180.02562 * 22 21 19 49 49 H 1.09004 * 113.49725 * 88.16771 * 27 16 15 50 50 H 1.08995 * 113.49335 * 218.68801 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5355 2.2157 0.0858 5 6 3.6422 1.1694 -0.1064 6 6 4.1762 2.5596 0.2442 7 6 4.0526 0.8110 -1.5361 8 7 4.1990 0.1835 0.8232 9 6 5.0178 -0.7736 0.3569 10 8 5.3074 -0.7771 -0.8207 11 6 5.5865 -1.8401 1.2501 12 8 5.5009 -1.4447 2.6197 13 6 4.1880 -1.0169 3.0069 14 6 3.8546 0.2592 2.2381 15 6 4.3206 1.5415 2.9302 16 7 3.0435 2.1583 2.5221 17 6 2.4818 2.9731 3.6078 18 6 1.3025 3.7895 3.0751 19 6 0.7267 4.6258 4.1887 20 1 1.1584 4.5793 5.1776 21 6 -0.3480 5.4540 3.9438 22 7 -0.8739 5.5102 2.7398 23 14 -1.0568 6.4965 5.3224 24 1 -0.0085 7.4123 5.8396 25 1 -2.1976 7.2933 4.8039 26 1 -1.5275 5.6130 6.4193 27 6 2.4533 0.8056 2.5163 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 5.2465 2.5993 0.0417 33 1 3.6640 3.3086 -0.3598 34 1 3.9986 2.7612 1.3006 35 1 3.7759 -0.2224 -1.7454 36 1 3.5434 1.4725 -2.2370 37 1 5.1309 0.9274 -1.6445 38 1 5.0274 -2.7647 1.1071 39 1 6.6313 -2.0082 0.9891 40 1 4.1678 -0.8165 4.0782 41 1 3.4621 -1.7927 2.7639 42 1 5.1926 1.9966 2.4606 43 1 4.4279 1.4381 4.0099 44 1 3.2480 3.6479 3.9894 45 1 2.1390 2.3212 4.4113 46 1 0.5363 3.1145 2.6936 47 1 1.6454 4.4413 2.2717 48 1 -1.6298 6.0932 2.5674 49 1 2.0526 0.5022 3.4836 50 1 1.7522 0.6410 1.6982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:01 Heat of formation + Delta-G solvation = -17.716998 kcal Electronic energy + Delta-G solvation = -33587.581396 eV Core-core repulsion = 29425.736439 eV Total energy + Delta-G solvation = -4161.844958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.53080 -40.68477 -40.47527 -38.63571 -36.58800 -35.74082 -35.40460 -33.71512 -32.41369 -30.54772 -28.74623 -28.38139 -27.85994 -26.99283 -26.93105 -24.78165 -23.81711 -22.46262 -21.84811 -21.43201 -19.98951 -18.65947 -18.56783 -18.52910 -17.43562 -17.16636 -16.92956 -16.61838 -16.57552 -16.21686 -16.08688 -15.77757 -15.41031 -15.30974 -15.23820 -14.57476 -14.44291 -14.19117 -14.04838 -14.00517 -13.60359 -13.43462 -13.37204 -13.15273 -13.09251 -12.96686 -12.89587 -12.81284 -12.69193 -12.45338 -12.30695 -11.89657 -11.80031 -11.61049 -11.36685 -11.26226 -11.10946 -10.96389 -10.54445 -10.07370 -9.91756 -9.74949 -9.39885 -8.16124 -6.30512 1.28363 1.32241 1.37777 1.42091 1.49869 1.91254 2.18269 2.39982 2.63749 2.95272 3.15550 3.19499 3.29722 3.54326 3.68388 3.86649 4.00234 4.08995 4.16586 4.20169 4.34509 4.38544 4.41245 4.45303 4.53584 4.55705 4.60346 4.64830 4.68942 4.70295 4.76256 4.83679 4.88183 4.92158 4.95109 5.08068 5.14425 5.30919 5.35473 5.41470 5.49581 5.71993 5.79323 5.83117 5.99155 6.09940 6.28382 6.30413 6.48856 6.89582 6.91166 7.29214 7.39211 8.94947 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.003930 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.495171 B = 7122.955654 C = 7827.014114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.730 5.730 3 C 0.520 3.480 4 O -0.544 6.544 5 C 0.169 3.831 6 C -0.188 4.188 7 C -0.111 4.111 8 N -0.564 5.564 9 C 0.484 3.516 10 O -0.549 6.549 11 C 0.053 3.947 12 O -0.369 6.369 13 C 0.074 3.926 14 C 0.117 3.883 15 C -0.015 4.015 16 N -0.470 5.470 17 C 0.044 3.956 18 C 0.059 3.941 19 C -0.546 4.546 20 H 0.064 0.936 21 C -0.001 4.001 22 N -0.931 5.931 23 Si 0.967 3.033 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.262 1.262 27 C -0.047 4.047 28 H 0.044 0.956 29 H 0.119 0.881 30 H 0.036 0.964 31 H 0.410 0.590 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.048 0.952 46 H -0.022 1.022 47 H -0.025 1.025 48 H 0.260 0.740 49 H 0.097 0.903 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.882 -22.245 -1.192 25.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.385 5.385 3 C 0.307 3.693 4 O -0.418 6.418 5 C 0.081 3.919 6 C -0.246 4.246 7 C -0.168 4.168 8 N -0.298 5.298 9 C 0.275 3.725 10 O -0.428 6.428 11 C -0.026 4.026 12 O -0.287 6.287 13 C -0.004 4.004 14 C 0.029 3.971 15 C -0.145 4.145 16 N -0.192 5.192 17 C -0.084 4.084 18 C 0.022 3.978 19 C -0.585 4.585 20 H 0.082 0.918 21 C -0.199 4.199 22 N -0.571 5.571 23 Si 0.791 3.209 24 H -0.191 1.191 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.177 4.177 28 H 0.063 0.937 29 H 0.137 0.863 30 H 0.054 0.946 31 H 0.245 0.755 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.154 0.846 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.098 0.902 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.122 0.878 44 H 0.079 0.921 45 H 0.066 0.934 46 H -0.003 1.003 47 H -0.007 1.007 48 H 0.069 0.931 49 H 0.115 0.885 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.546 -20.951 -2.323 24.034 hybrid contribution -0.933 0.818 0.632 1.392 sum 10.613 -20.133 -1.691 22.822 Atomic orbital electron populations 1.21583 0.78961 1.04101 1.00871 1.45868 1.07998 1.08324 1.76302 1.20710 0.90392 0.83852 0.74390 1.90914 1.70221 1.32931 1.47737 1.20586 0.88605 0.90976 0.91689 1.23074 0.98547 0.93449 1.09550 1.22240 1.02458 1.01289 0.90801 1.47330 1.46969 1.28723 1.06742 1.21964 0.77881 0.82798 0.89898 1.90847 1.59536 1.74756 1.17701 1.23009 1.05442 0.94621 0.79523 1.88202 1.30199 1.85035 1.25241 1.23089 0.85124 0.91620 1.00537 1.21955 0.95894 0.97973 0.81231 1.24514 0.95177 0.93692 1.01087 1.69020 1.03998 1.09489 1.36673 1.22560 0.97279 0.96561 0.92010 1.18549 0.91956 0.93120 0.94186 1.21671 1.15073 1.24840 0.96905 0.91786 1.26034 0.97329 0.98434 0.98069 1.70196 1.24513 1.39577 1.22836 0.85488 0.77828 0.78652 0.78953 1.19135 1.21171 1.18656 1.25124 0.97635 0.89908 1.04994 0.93714 0.86297 0.94557 0.75479 0.92955 0.94555 0.84636 0.90143 0.95059 0.90237 0.86048 0.83673 0.84333 0.88641 0.89647 0.87820 0.92060 0.93424 1.00317 1.00674 0.93090 0.88523 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.13 10.44 127.77 1.33 3.46 16 2 N -0.73 -18.16 4.18 -484.53 -2.03 -20.19 16 3 C 0.52 17.62 3.22 87.66 0.28 17.90 16 4 O -0.54 -25.41 15.11 -3.04 -0.05 -25.45 16 5 C 0.17 5.06 0.89 2.86 0.00 5.06 16 6 C -0.19 -6.62 7.18 71.98 0.52 -6.10 16 7 C -0.11 -3.12 6.81 71.98 0.49 -2.63 16 8 N -0.56 -12.74 2.26 -737.45 -1.67 -14.41 16 9 C 0.48 9.46 7.53 87.60 0.66 10.12 16 10 O -0.55 -13.49 12.04 -3.02 -0.04 -13.53 16 11 C 0.05 0.60 6.93 71.10 0.49 1.09 16 12 O -0.37 -4.87 10.84 -148.98 -1.62 -6.48 16 13 C 0.07 0.87 6.14 71.87 0.44 1.32 16 14 C 0.12 2.39 1.66 3.81 0.01 2.40 16 15 C -0.02 -0.38 6.03 83.69 0.50 0.12 16 16 N -0.47 -16.28 2.06 -927.72 -1.91 -18.19 16 17 C 0.04 1.82 4.76 86.30 0.41 2.23 16 18 C 0.06 3.37 5.30 29.85 0.16 3.53 16 19 C -0.55 -32.18 9.11 25.60 0.23 -31.95 16 20 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 21 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 22 N -0.93 -60.48 13.29 21.45 0.28 -60.20 16 23 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 27 C -0.05 -1.30 6.03 83.68 0.50 -0.79 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.10 7.98 -2.39 -0.02 1.08 16 31 H 0.41 7.45 8.50 -92.71 -0.79 6.66 16 32 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16 33 H 0.04 1.48 7.68 -2.38 -0.02 1.46 16 34 H 0.14 5.11 2.73 -56.40 -0.15 4.96 16 35 H 0.08 2.09 6.54 -2.38 -0.02 2.08 16 36 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 2.30 6.69 -2.39 -0.02 2.29 16 38 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.14 1.20 7.84 -2.39 -0.02 1.18 16 41 H 0.10 0.69 8.13 -2.39 -0.02 0.67 16 42 H 0.09 2.24 6.99 -2.39 -0.02 2.22 16 43 H 0.10 2.10 7.66 -2.39 -0.02 2.08 16 44 H 0.06 2.50 8.08 -2.39 -0.02 2.48 16 45 H 0.05 1.81 7.30 -2.39 -0.02 1.79 16 46 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 47 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 48 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 49 H 0.10 2.38 7.37 -2.39 -0.02 2.36 16 50 H 0.11 3.41 2.63 -2.40 -0.01 3.40 16 Total: -1.00 -83.46 375.40 1.54 -81.92 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.03 Total: 22.82 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.50 Total: 6.15 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -5.32 Total: -112.99 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -1.70 Total: -45.46 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -83.46 1.54 -81.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.203 kcal (2) G-P(sol) polarization free energy of solvation -83.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds