Wall clock time and date at job start Tue Mar 31 2020 23:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34771 * 120.00332 * 2 1 4 4 O 1.21278 * 119.99772 * 5.09886 * 3 2 1 5 5 C 1.50697 * 120.00016 * 185.11177 * 3 2 1 6 6 C 1.53002 * 109.47094 * 203.99988 * 5 3 2 7 7 C 1.53001 * 109.47910 * 83.99645 * 5 3 2 8 8 N 1.46497 * 109.47140 * 323.99303 * 5 3 2 9 9 C 1.46271 * 118.71837 * 123.22458 * 8 5 3 10 10 C 1.52538 * 109.57470 * 163.96091 * 9 8 5 11 11 C 1.53386 * 113.83886 * 176.50205 * 10 9 8 12 12 N 1.48065 * 86.02461 * 91.24678 * 11 10 9 13 13 C 1.46897 * 111.00139 * 137.23227 * 12 11 10 14 14 C 1.52998 * 109.47132 * 70.54727 * 13 12 11 15 15 C 1.50708 * 109.47073 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99749 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00093 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99752 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99963 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47354 * 60.00076 * 19 17 15 21 21 H 1.48506 * 109.46987 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47134 * 299.99884 * 19 17 15 23 23 C 1.48060 * 90.84346 * 24.30403 * 12 11 10 24 24 O 1.42685 * 112.48382 * 45.18799 * 10 9 8 25 25 C 1.43044 * 112.94175 * 295.89738 * 24 10 9 26 26 C 1.33723 * 118.71599 * 303.20965 * 8 5 3 27 27 O 1.21284 * 118.37797 * 3.22477 * 26 8 5 28 28 H 1.09006 * 109.47694 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47117 * 300.00474 * 1 2 3 30 30 H 1.08996 * 109.47332 * 59.99865 * 1 2 3 31 31 H 0.97005 * 119.99673 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47837 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47117 * 299.99726 * 6 5 3 34 34 H 1.08996 * 109.47434 * 59.99311 * 6 5 3 35 35 H 1.09001 * 109.46725 * 300.00509 * 7 5 3 36 36 H 1.09004 * 109.46674 * 60.00045 * 7 5 3 37 37 H 1.08994 * 109.47089 * 179.97438 * 7 5 3 38 38 H 1.08997 * 109.45384 * 283.98558 * 9 8 5 39 39 H 1.09006 * 109.45079 * 43.92149 * 9 8 5 40 40 H 1.08997 * 113.78774 * 205.52225 * 11 10 9 41 41 H 1.09003 * 113.78782 * 336.97290 * 11 10 9 42 42 H 1.09000 * 109.47082 * 190.54864 * 13 12 11 43 43 H 1.09004 * 109.46862 * 310.54756 * 13 12 11 44 44 H 1.09000 * 109.47248 * 300.00034 * 14 13 12 45 45 H 1.08996 * 109.47308 * 60.00031 * 14 13 12 46 46 H 0.97000 * 119.99866 * 179.97438 * 18 17 15 47 47 H 1.09000 * 113.78898 * 221.42212 * 23 12 11 48 48 H 1.08997 * 113.78677 * 89.97615 * 23 12 11 49 49 H 1.09002 * 109.34692 * 167.54184 * 25 24 10 50 50 H 1.09004 * 109.34898 * 287.23851 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5361 2.2153 0.0933 5 6 3.6414 1.1696 -0.1163 6 6 4.1975 2.4608 0.4875 7 6 4.0391 1.0837 -1.5912 8 7 4.1889 0.0181 0.6050 9 6 5.0339 -0.9294 -0.1215 10 6 5.8018 -1.7954 0.8720 11 6 6.6578 -2.8843 0.2130 12 7 7.7506 -1.8852 0.2207 13 6 9.0212 -2.4979 0.6308 14 6 9.5197 -3.4283 -0.4767 15 6 10.8229 -4.0573 -0.0557 16 1 11.2523 -3.8177 0.9058 17 6 11.4663 -4.9394 -0.8976 18 7 10.9425 -5.2323 -2.0678 19 14 13.0812 -5.7196 -0.3754 20 1 12.8739 -6.4998 0.8711 21 1 13.5645 -6.6236 -1.4499 22 1 14.0888 -4.6563 -0.1320 23 6 7.1175 -1.1691 1.3514 24 8 4.9744 -2.2757 1.9306 25 6 4.4585 -1.2267 2.7549 26 6 3.8969 -0.1257 1.9020 27 8 3.1410 0.6723 2.4147 28 1 -0.3635 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.9499 -0.8401 -0.0004 32 1 5.2842 2.4626 0.4038 33 1 3.7901 3.3177 -0.0492 34 1 3.9142 2.5221 1.5382 35 1 3.6429 0.1638 -2.0213 36 1 3.6317 1.9406 -2.1278 37 1 5.1258 1.0860 -1.6752 38 1 4.4097 -1.5646 -0.7500 39 1 5.7391 -0.3815 -0.7466 40 1 6.8448 -3.7451 0.8549 41 1 6.3231 -3.1619 -0.7865 42 1 9.7603 -1.7168 0.8092 43 1 8.8697 -3.0706 1.5458 44 1 8.7806 -4.2094 -0.6551 45 1 9.6711 -2.8556 -1.3916 46 1 11.3954 -5.8527 -2.6603 47 1 7.1478 -0.0836 1.2567 48 1 7.4406 -1.5212 2.3310 49 1 3.6714 -1.6247 3.3954 50 1 5.2609 -0.8269 3.3749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:59 Heat of formation + Delta-G solvation = -62.375652 kcal Electronic energy + Delta-G solvation = -31558.458249 eV Core-core repulsion = 27394.676747 eV Total energy + Delta-G solvation = -4163.781502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.91071 -40.33699 -39.05224 -36.98095 -36.59400 -34.83586 -33.53258 -32.56355 -31.19385 -29.06239 -28.20716 -27.68329 -26.88455 -26.15049 -25.52071 -23.44884 -22.97252 -21.65534 -20.42296 -19.82193 -18.70852 -18.00869 -17.79917 -16.69639 -16.53219 -16.29167 -15.86697 -15.63709 -15.35200 -15.22527 -14.78244 -14.59495 -14.41305 -14.32365 -14.09014 -13.70730 -13.50384 -13.26139 -13.00591 -12.69305 -12.57923 -12.56441 -12.46135 -12.34130 -12.21140 -12.07033 -11.94134 -11.69469 -11.61010 -11.19358 -11.01549 -10.86079 -10.59274 -10.39524 -10.18431 -10.04185 -9.66087 -9.44384 -9.34333 -9.24060 -9.03331 -8.58180 -8.39930 -6.07653 -4.10760 2.12945 2.14686 2.65521 2.97710 3.27836 3.28450 3.33283 3.35285 3.89234 4.09407 4.17918 4.33026 4.38273 4.41496 4.49935 4.63201 4.86871 4.94817 4.96110 5.09296 5.11904 5.17924 5.24551 5.26942 5.28693 5.38039 5.43271 5.45878 5.51606 5.55206 5.61519 5.67790 5.73980 5.78933 5.92853 5.97441 6.09825 6.16445 6.18092 6.60997 6.63664 6.90806 6.96859 7.15516 7.22284 7.60065 7.68806 7.74240 7.94538 8.00796 8.32197 8.95662 9.53662 11.03540 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.002442 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.168908 B =11461.842106 C =11677.904871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.731 5.731 3 C 0.530 3.470 4 O -0.532 6.532 5 C 0.155 3.845 6 C -0.148 4.148 7 C -0.156 4.156 8 N -0.599 5.599 9 C 0.110 3.890 10 C 0.061 3.939 11 C 0.038 3.962 12 N -0.471 5.471 13 C 0.031 3.969 14 C 0.030 3.970 15 C -0.525 4.525 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.021 4.021 24 O -0.354 6.354 25 C 0.052 3.948 26 C 0.486 3.514 27 O -0.529 6.529 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.399 0.601 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.031 0.969 44 H 0.017 0.983 45 H 0.025 0.975 46 H 0.262 0.738 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.129 0.871 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.747 9.306 3.707 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.382 5.382 3 C 0.315 3.685 4 O -0.408 6.408 5 C 0.067 3.933 6 C -0.207 4.207 7 C -0.213 4.213 8 N -0.335 5.335 9 C -0.012 4.012 10 C 0.020 3.980 11 C -0.091 4.091 12 N -0.195 5.195 13 C -0.097 4.097 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.072 0.928 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.150 4.150 24 O -0.272 6.272 25 C -0.027 4.027 26 C 0.274 3.726 27 O -0.405 6.405 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.233 0.767 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.035 0.965 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.147 0.853 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.437 10.524 3.309 21.485 hybrid contribution 1.201 -1.261 1.010 2.013 sum -17.236 9.263 4.319 20.038 Atomic orbital electron populations 1.21509 0.79586 1.02108 1.02207 1.45687 1.07686 1.08795 1.76071 1.20460 0.89320 0.83741 0.74951 1.90682 1.69727 1.31547 1.48800 1.20719 0.90157 0.88046 0.94330 1.22022 1.00613 0.94727 1.03299 1.22157 1.03757 1.03850 0.91553 1.47875 1.50504 1.25498 1.09660 1.21942 0.93899 0.90742 0.94597 1.23608 0.88841 0.97165 0.88351 1.23905 0.89383 0.94391 1.01383 1.68648 1.02362 1.16208 1.32280 1.22851 0.89594 0.97959 0.99270 1.19027 0.95558 0.93111 0.93066 1.21122 1.06604 1.25883 1.02798 0.92821 1.24982 0.97728 0.96561 0.94924 1.69950 1.39256 1.35026 1.08902 0.86650 0.83877 0.79251 0.78179 1.20257 1.21230 1.20206 1.24494 0.93292 1.00976 0.96213 1.88189 1.66511 1.30397 1.42065 1.22712 1.00128 0.87049 0.92808 1.21068 0.81596 0.87506 0.82423 1.90784 1.35116 1.43753 1.70883 0.90780 0.92205 0.92332 0.76704 0.91540 0.90457 0.90431 0.91118 0.90048 0.89627 0.90050 0.87355 0.89378 0.88174 0.91526 0.95031 0.96512 0.95696 0.92855 0.89430 0.90367 0.85315 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 10.71 59.84 0.64 1.40 16 2 N -0.73 -7.38 5.41 -67.08 -0.36 -7.74 16 3 C 0.53 6.62 4.87 -10.99 -0.05 6.57 16 4 O -0.53 -8.53 16.09 5.56 0.09 -8.44 16 5 C 0.15 1.59 0.97 -132.97 -0.13 1.46 16 6 C -0.15 -1.63 7.94 37.16 0.30 -1.33 16 7 C -0.16 -1.20 7.38 37.16 0.27 -0.92 16 8 N -0.60 -5.84 2.09 -161.08 -0.34 -6.17 16 9 C 0.11 1.00 4.60 -4.40 -0.02 0.98 16 10 C 0.06 0.66 1.21 -90.52 -0.11 0.55 16 11 C 0.04 0.52 6.52 -2.99 -0.02 0.50 16 12 N -0.47 -7.16 6.15 -240.94 -1.48 -8.65 16 13 C 0.03 0.58 4.75 -3.83 -0.02 0.56 16 14 C 0.03 0.72 5.04 -27.88 -0.14 0.58 16 15 C -0.53 -14.20 9.11 -34.44 -0.31 -14.51 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 19 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 C -0.02 -0.25 6.67 -2.98 -0.02 -0.27 16 24 O -0.35 -3.89 10.66 -35.23 -0.38 -4.26 16 25 C 0.05 0.50 6.67 35.75 0.24 0.74 16 26 C 0.49 5.46 6.64 -11.71 -0.08 5.38 16 27 O -0.53 -7.60 13.80 5.55 0.08 -7.53 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.40 3.44 8.01 -40.82 -0.33 3.12 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 34 H 0.08 1.04 6.35 -51.93 -0.33 0.71 16 35 H 0.07 0.47 7.66 -51.93 -0.40 0.07 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.59 6.75 -51.93 -0.35 0.24 16 38 H 0.08 0.62 7.94 -51.93 -0.41 0.21 16 39 H 0.11 0.96 6.20 -51.93 -0.32 0.64 16 40 H 0.09 1.29 7.78 -51.93 -0.40 0.89 16 41 H 0.10 1.27 8.09 -51.93 -0.42 0.85 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.03 0.59 7.70 -51.93 -0.40 0.19 16 44 H 0.02 0.42 7.54 -51.93 -0.39 0.03 16 45 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 48 H 0.08 0.96 7.79 -51.93 -0.40 0.56 16 49 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.09 0.79 7.92 -51.93 -0.41 0.38 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -33.34 393.76 -8.62 -41.96 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.32 Total: 0.81 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 0.45 Total: 3.25 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -1.45 Total: -47.66 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.21 Total: -20.23 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.34 -8.62 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.419 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds