Wall clock time and date at job start Tue Mar 31 2020 23:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34771 * 120.00332 * 2 1 4 4 O 1.21278 * 119.99772 * 5.09886 * 3 2 1 5 5 C 1.50697 * 120.00016 * 185.11177 * 3 2 1 6 6 C 1.53002 * 109.47094 * 203.99988 * 5 3 2 7 7 C 1.53001 * 109.47910 * 83.99645 * 5 3 2 8 8 N 1.46497 * 109.47140 * 323.99303 * 5 3 2 9 9 C 1.46271 * 118.71837 * 123.22458 * 8 5 3 10 10 C 1.52538 * 109.57470 * 163.96091 * 9 8 5 11 11 C 1.53386 * 113.83886 * 176.50205 * 10 9 8 12 12 N 1.48065 * 86.02461 * 91.24678 * 11 10 9 13 13 C 1.46897 * 111.00139 * 137.23227 * 12 11 10 14 14 C 1.52998 * 109.47132 * 70.54727 * 13 12 11 15 15 C 1.50708 * 109.47073 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99749 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00093 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99752 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99963 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47354 * 60.00076 * 19 17 15 21 21 H 1.48506 * 109.46987 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47134 * 299.99884 * 19 17 15 23 23 C 1.48060 * 90.84346 * 24.30403 * 12 11 10 24 24 O 1.42685 * 112.48382 * 45.18799 * 10 9 8 25 25 C 1.43044 * 112.94175 * 295.89738 * 24 10 9 26 26 C 1.33723 * 118.71599 * 303.20965 * 8 5 3 27 27 O 1.21284 * 118.37797 * 3.22477 * 26 8 5 28 28 H 1.09006 * 109.47694 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47117 * 300.00474 * 1 2 3 30 30 H 1.08996 * 109.47332 * 59.99865 * 1 2 3 31 31 H 0.97005 * 119.99673 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47837 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47117 * 299.99726 * 6 5 3 34 34 H 1.08996 * 109.47434 * 59.99311 * 6 5 3 35 35 H 1.09001 * 109.46725 * 300.00509 * 7 5 3 36 36 H 1.09004 * 109.46674 * 60.00045 * 7 5 3 37 37 H 1.08994 * 109.47089 * 179.97438 * 7 5 3 38 38 H 1.08997 * 109.45384 * 283.98558 * 9 8 5 39 39 H 1.09006 * 109.45079 * 43.92149 * 9 8 5 40 40 H 1.08997 * 113.78774 * 205.52225 * 11 10 9 41 41 H 1.09003 * 113.78782 * 336.97290 * 11 10 9 42 42 H 1.09000 * 109.47082 * 190.54864 * 13 12 11 43 43 H 1.09004 * 109.46862 * 310.54756 * 13 12 11 44 44 H 1.09000 * 109.47248 * 300.00034 * 14 13 12 45 45 H 1.08996 * 109.47308 * 60.00031 * 14 13 12 46 46 H 0.97000 * 119.99866 * 179.97438 * 18 17 15 47 47 H 1.09000 * 113.78898 * 221.42212 * 23 12 11 48 48 H 1.08997 * 113.78677 * 89.97615 * 23 12 11 49 49 H 1.09002 * 109.34692 * 167.54184 * 25 24 10 50 50 H 1.09004 * 109.34898 * 287.23851 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5361 2.2153 0.0933 5 6 3.6414 1.1696 -0.1163 6 6 4.1975 2.4608 0.4875 7 6 4.0391 1.0837 -1.5912 8 7 4.1889 0.0181 0.6050 9 6 5.0339 -0.9294 -0.1215 10 6 5.8018 -1.7954 0.8720 11 6 6.6578 -2.8843 0.2130 12 7 7.7506 -1.8852 0.2207 13 6 9.0212 -2.4979 0.6308 14 6 9.5197 -3.4283 -0.4767 15 6 10.8229 -4.0573 -0.0557 16 1 11.2523 -3.8177 0.9058 17 6 11.4663 -4.9394 -0.8976 18 7 10.9425 -5.2323 -2.0678 19 14 13.0812 -5.7196 -0.3754 20 1 12.8739 -6.4998 0.8711 21 1 13.5645 -6.6236 -1.4499 22 1 14.0888 -4.6563 -0.1320 23 6 7.1175 -1.1691 1.3514 24 8 4.9744 -2.2757 1.9306 25 6 4.4585 -1.2267 2.7549 26 6 3.8969 -0.1257 1.9020 27 8 3.1410 0.6723 2.4147 28 1 -0.3635 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.9499 -0.8401 -0.0004 32 1 5.2842 2.4626 0.4038 33 1 3.7901 3.3177 -0.0492 34 1 3.9142 2.5221 1.5382 35 1 3.6429 0.1638 -2.0213 36 1 3.6317 1.9406 -2.1278 37 1 5.1258 1.0860 -1.6752 38 1 4.4097 -1.5646 -0.7500 39 1 5.7391 -0.3815 -0.7466 40 1 6.8448 -3.7451 0.8549 41 1 6.3231 -3.1619 -0.7865 42 1 9.7603 -1.7168 0.8092 43 1 8.8697 -3.0706 1.5458 44 1 8.7806 -4.2094 -0.6551 45 1 9.6711 -2.8556 -1.3916 46 1 11.3954 -5.8527 -2.6603 47 1 7.1478 -0.0836 1.2567 48 1 7.4406 -1.5212 2.3310 49 1 3.6714 -1.6247 3.3954 50 1 5.2609 -0.8269 3.3749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:58 Heat of formation + Delta-G solvation = -88.792046 kcal Electronic energy + Delta-G solvation = -31559.603750 eV Core-core repulsion = 27394.676747 eV Total energy + Delta-G solvation = -4164.927003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.80453 -41.33283 -40.03548 -37.99127 -37.46819 -35.71273 -35.42281 -33.51855 -32.71844 -30.24011 -28.93729 -28.53148 -27.99696 -27.20538 -26.72652 -24.88433 -23.81862 -22.81770 -21.79507 -20.77012 -19.60577 -18.88565 -18.78415 -18.45361 -17.44502 -17.19832 -16.93169 -16.68258 -16.50977 -16.30681 -16.10597 -15.67346 -15.39211 -15.26280 -15.10182 -14.69883 -14.61713 -14.34623 -14.11764 -13.99803 -13.58252 -13.49087 -13.34934 -13.23255 -13.18607 -13.05029 -12.97885 -12.95731 -12.73365 -12.52601 -12.46594 -12.42008 -11.96517 -11.73065 -11.41354 -11.30798 -11.16079 -11.07805 -10.52605 -10.49194 -10.20726 -9.90803 -9.78275 -8.17879 -6.28236 1.25553 1.28999 1.42862 1.44464 1.52339 1.77320 2.18413 2.37152 2.43146 2.96800 3.16171 3.17089 3.22130 3.51409 3.57328 3.73369 3.87471 3.97283 4.16287 4.26132 4.30917 4.36054 4.37093 4.44129 4.51477 4.52782 4.54041 4.58847 4.62151 4.67179 4.74204 4.74385 4.78975 4.85139 4.89937 5.06191 5.08714 5.12892 5.25341 5.37534 5.37922 5.49660 5.69752 5.75996 5.81808 6.05669 6.14818 6.29441 6.40364 6.83760 6.88579 7.12965 7.40813 8.93488 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.002442 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.168908 B =11461.842106 C =11677.904871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.724 5.724 3 C 0.523 3.477 4 O -0.577 6.577 5 C 0.155 3.845 6 C -0.144 4.144 7 C -0.153 4.153 8 N -0.590 5.590 9 C 0.112 3.888 10 C 0.078 3.922 11 C 0.032 3.968 12 N -0.480 5.480 13 C 0.048 3.952 14 C 0.038 3.962 15 C -0.546 4.546 16 H 0.058 0.942 17 C 0.005 3.995 18 N -0.928 5.928 19 Si 0.959 3.041 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.018 4.018 24 O -0.359 6.359 25 C 0.055 3.945 26 C 0.485 3.515 27 O -0.563 6.563 28 H 0.107 0.893 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.408 0.592 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.032 0.968 44 H -0.002 1.002 45 H -0.005 1.005 46 H 0.263 0.737 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.145 0.855 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.511 8.731 3.969 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.374 5.374 3 C 0.309 3.691 4 O -0.456 6.456 5 C 0.068 3.932 6 C -0.203 4.203 7 C -0.210 4.210 8 N -0.325 5.325 9 C -0.009 4.009 10 C 0.038 3.962 11 C -0.097 4.097 12 N -0.203 5.203 13 C -0.080 4.080 14 C 0.001 3.999 15 C -0.584 4.584 16 H 0.076 0.924 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.784 3.216 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.147 4.147 24 O -0.277 6.277 25 C -0.024 4.024 26 C 0.274 3.726 27 O -0.442 6.442 28 H 0.125 0.875 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.243 0.757 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.017 0.983 45 H 0.014 0.986 46 H 0.072 0.928 47 H 0.119 0.881 48 H 0.098 0.902 49 H 0.162 0.838 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.195 9.916 3.569 21.027 hybrid contribution 1.068 -1.093 0.943 1.796 sum -17.127 8.823 4.513 19.788 Atomic orbital electron populations 1.21636 0.78723 1.04017 1.01326 1.45709 1.08432 1.08556 1.74743 1.20888 0.90294 0.83658 0.74234 1.90656 1.70750 1.33101 1.51052 1.20730 0.88838 0.87739 0.95918 1.21965 1.01553 0.95237 1.01497 1.22189 1.04624 1.04718 0.89458 1.47830 1.49996 1.25333 1.09299 1.22040 0.94202 0.90650 0.94054 1.23327 0.88656 0.95789 0.88447 1.23913 0.89507 0.94359 1.01933 1.68570 1.01280 1.16733 1.33735 1.22470 0.91533 0.96889 0.97118 1.18839 0.94425 0.93087 0.93582 1.21603 1.07791 1.26011 1.03003 0.92395 1.25869 1.01361 0.97193 0.94922 1.70073 1.40901 1.35800 1.10043 0.85587 0.79547 0.78437 0.77994 1.19299 1.20960 1.19367 1.24558 0.93371 1.01487 0.95251 1.88187 1.66304 1.30936 1.42275 1.22829 1.00874 0.86292 0.92392 1.21364 0.81073 0.87376 0.82772 1.90790 1.36766 1.45089 1.71595 0.87469 0.94062 0.92267 0.75688 0.89942 0.90848 0.93168 0.89689 0.89921 0.88355 0.87761 0.86546 0.90768 0.87471 0.91803 0.94930 0.98347 0.98625 0.92781 0.88079 0.90225 0.83761 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 10.71 127.77 1.37 2.74 16 2 N -0.72 -13.62 5.41 -484.54 -2.62 -16.24 16 3 C 0.52 12.74 4.87 87.66 0.43 13.17 16 4 O -0.58 -18.80 16.09 -3.02 -0.05 -18.85 16 5 C 0.16 2.96 0.97 2.86 0.00 2.96 16 6 C -0.14 -3.08 7.94 71.98 0.57 -2.51 16 7 C -0.15 -1.98 7.38 71.98 0.53 -1.45 16 8 N -0.59 -10.20 2.09 -782.51 -1.64 -11.84 16 9 C 0.11 1.69 4.60 86.27 0.40 2.08 16 10 C 0.08 1.52 1.21 -10.66 -0.01 1.51 16 11 C 0.03 0.81 6.52 86.20 0.56 1.37 16 12 N -0.48 -13.93 6.15 -920.47 -5.66 -19.59 16 13 C 0.05 1.80 4.75 86.30 0.41 2.21 16 14 C 0.04 1.87 5.04 29.85 0.15 2.02 16 15 C -0.55 -29.57 9.11 25.60 0.23 -29.34 16 16 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 17 C 0.00 0.27 5.46 84.65 0.46 0.74 16 18 N -0.93 -54.28 13.29 21.45 0.28 -54.00 16 19 Si 0.96 42.67 29.54 68.60 2.03 44.69 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 C -0.02 -0.39 6.67 86.21 0.58 0.18 16 24 O -0.36 -6.98 10.66 -148.98 -1.59 -8.57 16 25 C 0.05 0.93 6.67 71.07 0.47 1.40 16 26 C 0.49 10.07 6.64 87.65 0.58 10.66 16 27 O -0.56 -15.87 13.80 -3.04 -0.04 -15.92 16 28 H 0.11 0.95 8.14 -2.38 -0.02 0.94 16 29 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.41 6.11 8.01 -92.70 -0.74 5.37 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.60 7.87 -2.39 -0.02 1.58 16 34 H 0.05 1.36 6.35 -2.39 -0.02 1.34 16 35 H 0.08 0.87 7.66 -2.39 -0.02 0.85 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.05 6.75 -2.39 -0.02 1.03 16 38 H 0.10 1.18 7.94 -2.39 -0.02 1.16 16 39 H 0.12 1.67 6.20 -2.38 -0.01 1.65 16 40 H 0.07 2.13 7.78 -2.39 -0.02 2.11 16 41 H 0.11 2.56 8.09 -2.39 -0.02 2.54 16 42 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.03 1.20 7.70 -2.38 -0.02 1.18 16 44 H 0.00 -0.10 7.54 -2.39 -0.02 -0.11 16 45 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 47 H 0.10 1.99 8.09 -2.39 -0.02 1.97 16 48 H 0.08 1.78 7.79 -2.39 -0.02 1.76 16 49 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.10 1.53 7.92 -2.38 -0.02 1.51 16 Total: -1.00 -73.53 393.76 -2.36 -75.89 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.20 Total: 16.68 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.73 Total: 7.75 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -9.63 Total: -101.67 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -1.68 Total: -43.34 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -73.53 -2.36 -75.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.900 kcal (2) G-P(sol) polarization free energy of solvation -73.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds