Wall clock time and date at job start Wed Apr 1 2020 00:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47288 * 2 1 4 4 H 1.08998 * 109.46944 * 55.00033 * 3 2 1 5 5 C 1.50701 * 109.46869 * 175.00207 * 3 2 1 6 6 N 1.34777 * 119.99942 * 299.99673 * 5 3 2 7 7 O 1.21281 * 120.00185 * 119.99790 * 5 3 2 8 8 N 1.46500 * 109.47260 * 295.00081 * 3 2 1 9 9 C 1.34271 * 119.37639 * 304.19678 * 8 3 2 10 10 O 1.21281 * 118.97506 * 1.96612 * 9 8 3 11 11 C 1.50266 * 122.07103 * 181.71018 * 9 8 3 12 12 O 1.42830 * 110.54884 * 342.07807 * 11 9 8 13 13 C 1.43381 * 113.33755 * 51.10262 * 12 11 9 14 14 C 1.45916 * 119.37917 * 124.46293 * 8 3 2 15 15 C 1.53477 * 113.79720 * 32.97992 * 14 8 3 16 16 N 1.48044 * 86.05688 * 221.91812 * 15 14 8 17 17 C 1.46900 * 111.00110 * 137.29247 * 16 15 14 18 18 C 1.53003 * 109.47201 * 90.56750 * 17 16 15 19 19 C 1.52989 * 109.47324 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47308 * 179.97438 * 19 18 17 21 21 H 1.08006 * 120.00190 * 359.97438 * 20 19 18 22 22 C 1.37884 * 120.00182 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99864 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99828 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47331 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 120.00134 * 24 22 20 27 27 H 1.48504 * 109.46734 * 239.99807 * 24 22 20 28 28 C 1.48049 * 90.82756 * 24.37490 * 16 15 14 29 29 H 1.08992 * 109.47715 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47108 * 300.00177 * 1 2 3 31 31 H 1.09007 * 109.47122 * 59.99770 * 1 2 3 32 32 H 1.08999 * 109.46491 * 240.00220 * 2 1 3 33 33 H 1.08997 * 109.47050 * 120.00406 * 2 1 3 34 34 H 0.97002 * 119.99930 * 0.02562 * 6 5 3 35 35 H 0.97001 * 119.99636 * 179.97438 * 6 5 3 36 36 H 1.08998 * 109.44084 * 221.63714 * 11 9 8 37 37 H 1.08994 * 109.09926 * 102.29625 * 11 9 8 38 38 H 1.08999 * 109.70648 * 174.67717 * 13 12 11 39 39 H 1.09006 * 109.70657 * 54.06153 * 13 12 11 40 40 H 1.08996 * 113.78183 * 336.20099 * 15 14 8 41 41 H 1.08998 * 113.78112 * 107.63734 * 15 14 8 42 42 H 1.09001 * 109.47042 * 210.56283 * 17 16 15 43 43 H 1.09000 * 109.47086 * 330.56477 * 17 16 15 44 44 H 1.08998 * 109.46667 * 300.00237 * 18 17 16 45 45 H 1.08995 * 109.47112 * 59.99443 * 18 17 16 46 46 H 1.09005 * 109.47281 * 300.00046 * 19 18 17 47 47 H 1.08995 * 109.47645 * 59.99569 * 19 18 17 48 48 H 0.96998 * 119.99794 * 179.97438 * 23 22 20 49 49 H 1.09007 * 113.77703 * 221.34770 * 28 16 15 50 50 H 1.08997 * 113.88448 * 89.92999 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 7 4.1298 0.8910 1.2031 7 8 4.2217 1.9433 -0.7478 8 7 1.6525 2.0975 -1.2518 9 6 2.0112 1.5460 -2.4223 10 8 2.6185 0.4962 -2.4155 11 6 1.6788 2.1856 -3.7408 12 8 0.6352 3.1478 -3.5823 13 6 0.8875 4.0918 -2.5330 14 6 0.8891 3.3401 -1.2030 15 6 1.2271 4.2277 0.0026 16 7 -0.2309 4.4602 0.1106 17 6 -0.6711 4.4017 1.5109 18 6 -0.6015 5.8007 2.1263 19 6 -1.0593 5.7397 3.5848 20 6 -0.9901 7.1176 4.1911 21 1 -0.6530 7.9533 3.5958 22 6 -1.3573 7.3115 5.5059 23 7 -1.7684 6.2940 6.2307 24 14 -1.2723 9.0197 6.2572 25 1 -0.7818 9.9840 5.2400 26 1 -2.6250 9.4272 6.7146 27 1 -0.3418 9.0056 7.4145 28 6 -0.5079 3.1837 -0.5863 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5861 0.4914 1.9000 35 1 5.0966 0.8918 1.2826 36 1 1.3577 1.4185 -4.4454 37 1 2.5682 2.6799 -4.1316 38 1 0.1051 4.8506 -2.5253 39 1 1.8572 4.5645 -2.6891 40 1 1.6487 3.6812 0.8462 41 1 1.7966 5.1206 -0.2550 42 1 -1.6971 4.0363 1.5543 43 1 -0.0212 3.7269 2.0681 44 1 0.4245 6.1661 2.0828 45 1 -1.2513 6.4755 1.5690 46 1 -2.0852 5.3741 3.6287 47 1 -0.4092 5.0651 4.1418 48 1 -2.0263 6.4304 7.1558 49 1 -1.3184 3.2463 -1.3125 50 1 -0.6002 2.3272 0.0815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274043320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:17 Heat of formation + Delta-G solvation = -101.699615 kcal Electronic energy + Delta-G solvation = -31792.391047 eV Core-core repulsion = 27626.904329 eV Total energy + Delta-G solvation = -4165.486717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.91466 -40.75135 -40.00112 -38.52125 -36.78353 -35.93331 -34.93337 -34.03755 -33.26234 -30.97358 -29.64126 -28.70957 -27.63654 -26.65685 -26.15694 -24.22237 -23.29388 -22.20321 -21.72972 -21.36548 -19.63265 -19.13163 -18.66455 -18.29071 -17.83027 -17.45765 -17.04120 -16.79850 -16.51118 -16.27927 -16.07975 -15.90314 -15.62406 -15.42111 -15.32617 -14.83822 -14.66863 -14.61660 -14.33185 -14.17611 -13.78937 -13.43490 -13.32284 -13.13605 -12.96685 -12.81812 -12.72140 -12.67486 -12.45811 -12.22725 -12.11775 -12.06628 -11.89958 -11.48579 -11.41228 -11.32921 -11.11399 -11.04922 -10.73385 -10.54037 -10.30900 -9.90373 -9.81942 -8.19365 -6.29155 1.32546 1.40103 1.41242 1.51422 1.53865 1.55426 2.41625 2.50830 2.60854 2.86311 3.14269 3.15216 3.33209 3.41863 3.69862 3.78023 3.78556 3.88540 4.02492 4.10029 4.21603 4.26503 4.32184 4.36366 4.46342 4.49135 4.54467 4.67570 4.72729 4.74358 4.77452 4.83442 4.88194 4.93396 5.04075 5.10495 5.24287 5.26245 5.33903 5.37653 5.55145 5.70285 5.79006 5.81116 5.88612 5.95023 6.23339 6.29147 6.32657 6.87962 6.94408 7.23742 7.39999 8.92371 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.002804 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.738040 B = 9982.943588 C =10667.093093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.122 3.878 4 H 0.125 0.875 5 C 0.508 3.492 6 N -0.835 5.835 7 O -0.574 6.574 8 N -0.570 5.570 9 C 0.494 3.506 10 O -0.559 6.559 11 C 0.051 3.949 12 O -0.367 6.367 13 C 0.078 3.922 14 C 0.113 3.887 15 C -0.002 4.002 16 N -0.473 5.473 17 C 0.037 3.963 18 C -0.085 4.085 19 C 0.026 3.974 20 C -0.541 4.541 21 H 0.056 0.944 22 C 0.001 3.999 23 N -0.932 5.932 24 Si 0.960 3.040 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.278 1.278 28 C -0.002 4.002 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.417 0.583 35 H 0.409 0.591 36 H 0.146 0.854 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.051 0.949 46 H -0.007 1.007 47 H -0.007 1.007 48 H 0.263 0.737 49 H 0.108 0.892 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.968 -13.131 -16.213 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.014 3.986 4 H 0.142 0.858 5 C 0.292 3.708 6 N -0.400 5.400 7 O -0.452 6.452 8 N -0.302 5.302 9 C 0.284 3.716 10 O -0.438 6.438 11 C -0.029 4.029 12 O -0.285 6.285 13 C 0.001 3.999 14 C 0.027 3.973 15 C -0.132 4.132 16 N -0.196 5.196 17 C -0.092 4.092 18 C -0.123 4.123 19 C -0.012 4.012 20 C -0.579 4.579 21 H 0.075 0.925 22 C -0.197 4.197 23 N -0.572 5.572 24 Si 0.785 3.215 25 H -0.188 1.188 26 H -0.204 1.204 27 H -0.204 1.204 28 C -0.131 4.131 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.248 0.752 35 H 0.241 0.759 36 H 0.164 0.836 37 H 0.117 0.883 38 H 0.157 0.843 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.011 0.989 47 H 0.011 0.989 48 H 0.072 0.928 49 H 0.126 0.874 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.022 -12.745 -17.056 22.420 hybrid contribution 0.795 -0.108 1.969 2.126 sum 7.817 -12.852 -15.088 21.305 Atomic orbital electron populations 1.21809 0.93878 1.02815 1.01879 1.21976 0.97707 0.92818 1.04923 1.21211 0.91131 0.97303 0.88914 0.85764 1.21077 0.91362 0.76816 0.81593 1.43653 1.12171 1.61230 1.22993 1.90701 1.66182 1.46962 1.41403 1.47306 1.53802 1.24136 1.04913 1.21510 0.77817 0.85040 0.87262 1.90626 1.41523 1.24006 1.87691 1.22850 0.93642 0.93280 0.93087 1.88183 1.43365 1.42874 1.54049 1.22864 1.04684 0.90664 0.81643 1.22912 0.92051 0.84159 0.98200 1.24511 0.92398 0.99786 0.96461 1.68516 1.06365 1.31441 1.13285 1.22569 1.00749 0.97463 0.88378 1.21267 1.00013 0.95723 0.95324 1.18977 0.94707 0.95348 0.92153 1.21727 1.43630 0.95659 0.96852 0.92540 1.25920 0.94867 1.00943 0.97936 1.70082 1.45830 1.32422 1.08879 0.85468 0.77876 0.79764 0.78377 1.18779 1.20406 1.20414 1.24641 0.97259 0.92721 0.98510 0.91167 0.91791 0.93162 0.90325 0.88528 0.75199 0.75948 0.83619 0.88283 0.84301 0.90688 0.90607 0.88103 0.90974 0.93849 0.93688 0.93052 0.98853 0.98877 0.92818 0.87356 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.52 71.98 0.61 -1.62 16 2 C -0.14 -2.31 5.15 30.60 0.16 -2.16 16 3 C 0.12 2.38 1.54 44.25 0.07 2.45 16 4 H 0.12 2.15 5.64 -2.39 -0.01 2.14 16 5 C 0.51 11.70 6.84 87.66 0.60 12.30 16 6 N -0.84 -12.21 8.74 -173.53 -1.52 -13.73 16 7 O -0.57 -18.32 15.85 12.08 0.19 -18.13 16 8 N -0.57 -12.05 1.84 -765.95 -1.41 -13.46 16 9 C 0.49 11.82 6.37 87.60 0.56 12.38 16 10 O -0.56 -16.62 13.40 12.08 0.16 -16.46 16 11 C 0.05 0.91 6.94 71.10 0.49 1.40 16 12 O -0.37 -6.69 10.84 -148.98 -1.62 -8.30 16 13 C 0.08 1.35 5.98 71.91 0.43 1.78 16 14 C 0.11 2.19 1.50 5.16 0.01 2.20 16 15 C 0.00 -0.05 6.85 86.24 0.59 0.54 16 16 N -0.47 -11.35 6.03 -914.25 -5.52 -16.87 16 17 C 0.04 1.10 4.80 86.30 0.41 1.51 16 18 C -0.09 -3.32 5.46 30.59 0.17 -3.15 16 19 C 0.03 1.30 4.97 29.84 0.15 1.45 16 20 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 21 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 22 C 0.00 0.06 5.46 84.66 0.46 0.52 16 23 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 24 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 25 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 28 C 0.00 -0.04 6.49 86.25 0.56 0.52 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.89 7.34 -2.39 -0.02 0.88 16 31 H 0.05 0.87 6.82 -2.38 -0.02 0.85 16 32 H 0.08 1.80 5.57 -2.39 -0.01 1.79 16 33 H 0.10 1.15 7.43 -2.39 -0.02 1.14 16 34 H 0.42 3.48 8.19 -92.71 -0.76 2.72 16 35 H 0.41 5.34 8.93 -92.71 -0.83 4.51 16 36 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.14 2.18 7.97 -2.39 -0.02 2.16 16 39 H 0.07 1.22 8.13 -2.38 -0.02 1.20 16 40 H 0.08 1.68 5.20 -2.39 -0.01 1.67 16 41 H 0.10 2.19 8.09 -2.39 -0.02 2.18 16 42 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 43 H 0.04 1.23 7.38 -2.39 -0.02 1.22 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 46 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 47 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 48 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 49 H 0.11 1.97 8.09 -2.38 -0.02 1.95 16 50 H 0.09 1.60 4.69 -2.39 -0.01 1.59 16 Total: -1.00 -75.25 387.38 -2.50 -77.75 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.61 Total: 18.54 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.50 Total: 0.11 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -8.15 Total: -99.20 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -1.26 Total: -42.89 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -75.25 -2.50 -77.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.951 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds