Wall clock time and date at job start Wed Apr 1 2020 00:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99770 * 3 2 1 6 6 N 1.34774 * 120.00164 * 300.00292 * 5 3 2 7 7 O 1.21282 * 119.99865 * 119.99797 * 5 3 2 8 8 N 1.46500 * 109.47473 * 295.00136 * 3 2 1 9 9 C 1.46266 * 118.71751 * 119.99732 * 8 3 2 10 10 C 1.52555 * 109.56740 * 163.90069 * 9 8 3 11 11 C 1.53397 * 113.81055 * 273.97867 * 10 9 8 12 12 N 1.48058 * 86.02044 * 221.82580 * 11 10 9 13 13 C 1.46901 * 111.00432 * 137.23201 * 12 11 10 14 14 C 1.53000 * 109.46947 * 70.54448 * 13 12 11 15 15 C 1.53000 * 109.47375 * 180.02562 * 14 13 12 16 16 C 1.50692 * 109.47635 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99927 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00349 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99974 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99765 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47171 * 89.99681 * 20 18 16 22 22 H 1.48502 * 109.47192 * 209.99906 * 20 18 16 23 23 H 1.48500 * 109.47050 * 329.99858 * 20 18 16 24 24 C 1.48061 * 90.84496 * 24.30404 * 12 11 10 25 25 O 1.42691 * 112.47276 * 45.21702 * 10 9 8 26 26 C 1.43038 * 112.94840 * 295.89611 * 25 10 9 27 27 C 1.33719 * 118.70972 * 299.72908 * 8 3 2 28 28 O 1.21275 * 118.38554 * 3.23883 * 27 8 3 29 29 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 30 30 H 1.08998 * 109.47250 * 59.99881 * 1 2 3 31 31 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47252 * 240.00195 * 2 1 3 33 33 H 1.08998 * 109.47250 * 120.00119 * 2 1 3 34 34 H 0.97005 * 119.99795 * 0.02562 * 6 5 3 35 35 H 0.97000 * 120.00095 * 179.97438 * 6 5 3 36 36 H 1.08997 * 109.45701 * 283.93710 * 9 8 3 37 37 H 1.09001 * 109.45586 * 43.89515 * 9 8 3 38 38 H 1.08994 * 113.78769 * 336.10183 * 11 10 9 39 39 H 1.09002 * 113.78410 * 107.55272 * 11 10 9 40 40 H 1.08996 * 109.47285 * 190.55003 * 13 12 11 41 41 H 1.09004 * 109.46730 * 310.55259 * 13 12 11 42 42 H 1.08997 * 109.47653 * 300.00924 * 14 13 12 43 43 H 1.09004 * 109.47221 * 60.00592 * 14 13 12 44 44 H 1.09004 * 109.46747 * 300.00867 * 15 14 13 45 45 H 1.09004 * 109.46568 * 60.00064 * 15 14 13 46 46 H 0.96999 * 119.99384 * 180.02562 * 19 18 16 47 47 H 1.09002 * 113.78768 * 221.41875 * 24 12 11 48 48 H 1.08995 * 113.78315 * 89.96570 * 24 12 11 49 49 H 1.09006 * 109.35257 * 167.53151 * 26 25 10 50 50 H 1.08999 * 109.35479 * 287.23777 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 7 4.1298 0.8912 1.2032 7 8 4.2217 1.9436 -0.7477 8 7 1.6524 2.0975 -1.2518 9 6 0.8040 3.2873 -1.1890 10 6 0.8546 4.0220 -2.5250 11 6 2.0254 5.0055 -2.6470 12 7 1.0528 5.9244 -3.2809 13 6 1.2210 7.2956 -2.7812 14 6 2.5284 7.8784 -3.3215 15 6 2.7040 9.3063 -2.8006 16 6 3.9914 9.8807 -3.3331 17 1 4.6212 9.2868 -3.9790 18 6 4.3652 11.1643 -2.9960 19 7 5.4885 11.6656 -3.4612 20 14 3.2762 12.1911 -1.8784 21 1 3.6707 11.9704 -0.4638 22 1 3.4338 13.6282 -2.2178 23 1 1.8584 11.7910 -2.0650 24 6 -0.0697 5.2441 -2.5959 25 8 0.7273 3.1387 -3.6384 26 6 1.8127 2.2130 -3.7428 27 6 2.0927 1.5875 -2.4068 28 8 2.7470 0.5669 -2.3741 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.5861 0.4915 1.9001 35 1 5.0965 0.8920 1.2827 36 1 -0.2230 2.9901 -0.9766 37 1 1.1618 3.9471 -0.3985 38 1 2.4039 5.3595 -1.6881 39 1 2.8144 4.6685 -3.3193 40 1 0.3843 7.9092 -3.1150 41 1 1.2513 7.2840 -1.6916 42 1 3.3652 7.2648 -2.9877 43 1 2.4983 7.8900 -4.4110 44 1 1.8672 9.9201 -3.1340 45 1 2.7343 9.2943 -1.7110 46 1 5.7516 12.5685 -3.2237 47 1 -0.9457 5.0966 -3.2276 48 1 -0.3125 5.6686 -1.6219 49 1 1.5560 1.4349 -4.4618 50 1 2.7047 2.7390 -4.0830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274043634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:56 Heat of formation + Delta-G solvation = -101.956345 kcal Electronic energy + Delta-G solvation = -31118.487810 eV Core-core repulsion = 26952.989960 eV Total energy + Delta-G solvation = -4165.497850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.63150 -41.22151 -39.75201 -37.97237 -36.99094 -35.95681 -35.01036 -34.05180 -33.58985 -31.20765 -29.52818 -28.99616 -27.54666 -26.98117 -25.99260 -23.83486 -23.15406 -22.36501 -21.64221 -21.01327 -19.66297 -18.92920 -18.84891 -18.60544 -17.76137 -17.38387 -17.06939 -16.98033 -16.49194 -16.30461 -15.99837 -15.84348 -15.65926 -15.24413 -15.11832 -14.96058 -14.74906 -14.61715 -14.29359 -14.16767 -13.70196 -13.66555 -13.55918 -13.26261 -13.05213 -12.95357 -12.78153 -12.59621 -12.45276 -12.21099 -11.99851 -11.82470 -11.75311 -11.54272 -11.40514 -11.35915 -11.22915 -10.96147 -10.77749 -10.66878 -10.37558 -9.88635 -9.65944 -8.30523 -6.36012 1.35148 1.38032 1.38805 1.51109 1.62197 1.69684 2.32102 2.36252 2.59416 2.85116 3.04557 3.19314 3.27041 3.54105 3.83003 3.86581 3.96393 4.00686 4.05754 4.12822 4.18784 4.30735 4.32562 4.36424 4.39041 4.53721 4.55059 4.60468 4.67293 4.71355 4.77778 4.83093 4.84780 4.93121 5.01124 5.08208 5.14628 5.36001 5.37213 5.42708 5.50119 5.58785 5.65521 5.77045 5.86566 6.03949 6.24931 6.28117 6.43112 6.72606 6.99070 7.28609 7.34760 8.87052 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.002602 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.441368 B =10757.726342 C =11428.933134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.127 3.873 4 H 0.155 0.845 5 C 0.500 3.500 6 N -0.836 5.836 7 O -0.583 6.583 8 N -0.585 5.585 9 C 0.100 3.900 10 C 0.073 3.927 11 C -0.018 4.018 12 N -0.493 5.493 13 C 0.032 3.968 14 C -0.090 4.090 15 C -0.006 4.006 16 C -0.538 4.538 17 H 0.021 0.979 18 C -0.002 4.002 19 N -0.956 5.956 20 Si 0.960 3.040 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.239 1.239 24 C 0.036 3.964 25 O -0.340 6.340 26 C 0.052 3.948 27 C 0.498 3.502 28 O -0.565 6.565 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.419 0.581 35 H 0.405 0.595 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.035 0.965 43 H 0.039 0.961 44 H 0.025 0.975 45 H 0.023 0.977 46 H 0.267 0.733 47 H 0.111 0.889 48 H 0.119 0.881 49 H 0.144 0.856 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.067 -26.058 15.816 35.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.020 3.980 4 H 0.173 0.827 5 C 0.284 3.716 6 N -0.401 5.401 7 O -0.461 6.461 8 N -0.317 5.317 9 C -0.023 4.023 10 C 0.032 3.968 11 C -0.147 4.147 12 N -0.215 5.215 13 C -0.096 4.096 14 C -0.128 4.128 15 C -0.044 4.044 16 C -0.576 4.576 17 H 0.039 0.961 18 C -0.198 4.198 19 N -0.597 5.597 20 Si 0.782 3.218 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.163 1.163 24 C -0.092 4.092 25 O -0.258 6.258 26 C -0.027 4.027 27 C 0.286 3.714 28 O -0.444 6.444 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.251 0.749 35 H 0.236 0.764 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.041 0.959 46 H 0.075 0.925 47 H 0.130 0.870 48 H 0.137 0.863 49 H 0.162 0.838 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.551 -25.965 14.323 34.458 hybrid contribution 1.426 0.623 0.976 1.837 sum -16.125 -25.342 15.299 33.709 Atomic orbital electron populations 1.21691 0.93207 1.02525 1.02475 1.21925 0.98102 0.93012 1.04213 1.21357 0.90380 0.97668 0.88595 0.82729 1.21361 0.92044 0.76752 0.81398 1.43638 1.12000 1.61359 1.23065 1.90766 1.66580 1.47175 1.41600 1.47192 1.50361 1.29165 1.05003 1.22375 0.96883 0.85800 0.97196 1.23026 0.97419 0.89652 0.86673 1.24437 0.96564 0.94314 0.99393 1.68622 1.03950 1.01247 1.47698 1.22640 0.98116 0.90767 0.98123 1.21226 0.96134 0.95853 0.99558 1.19471 0.94811 0.93989 0.96164 1.21539 1.06592 0.99482 1.30027 0.96089 1.26177 0.96634 0.99240 0.97795 1.70102 1.25072 1.17099 1.47388 0.85515 0.80484 0.76986 0.78773 1.18888 1.21046 1.16257 1.24083 0.95629 0.88442 1.01031 1.88115 1.43522 1.46553 1.47625 1.22749 0.92277 0.93320 0.94337 1.20861 0.78545 0.84592 0.87373 1.90641 1.40362 1.25714 1.87716 0.90106 0.93816 0.91991 0.92148 0.88250 0.74942 0.76397 0.86585 0.87479 0.89830 0.91739 0.89696 0.92518 0.94646 0.94166 0.95683 0.95884 0.92476 0.87039 0.86313 0.83805 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.80 71.98 0.71 -0.42 16 2 C -0.13 -1.55 5.20 30.59 0.16 -1.39 16 3 C 0.13 1.72 2.46 44.25 0.11 1.83 16 4 H 0.16 0.76 7.88 -2.39 -0.02 0.74 16 5 C 0.50 10.22 6.73 87.66 0.59 10.81 16 6 N -0.84 -9.19 8.74 -173.53 -1.52 -10.71 16 7 O -0.58 -19.26 15.43 16.34 0.25 -19.00 16 8 N -0.58 -10.56 2.07 -805.74 -1.67 -12.23 16 9 C 0.10 1.26 5.75 86.28 0.50 1.76 16 10 C 0.07 1.40 1.16 -10.65 -0.01 1.38 16 11 C -0.02 -0.47 6.22 86.21 0.54 0.07 16 12 N -0.49 -13.19 6.26 -920.57 -5.77 -18.95 16 13 C 0.03 0.93 4.82 86.30 0.42 1.34 16 14 C -0.09 -3.67 5.22 30.59 0.16 -3.51 16 15 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 16 C -0.54 -32.49 9.66 25.60 0.25 -32.24 16 17 H 0.02 1.41 7.99 -2.91 -0.02 1.39 16 18 C 0.00 -0.14 5.47 84.66 0.46 0.32 16 19 N -0.96 -62.02 13.96 21.45 0.30 -61.72 16 20 Si 0.96 44.44 27.47 68.60 1.88 46.33 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 24 C 0.04 0.61 7.38 86.21 0.64 1.25 16 25 O -0.34 -7.72 10.66 -148.98 -1.59 -9.31 16 26 C 0.05 1.23 6.65 71.06 0.47 1.70 16 27 C 0.50 12.59 6.23 87.65 0.55 13.13 16 28 O -0.56 -17.85 13.04 16.36 0.21 -17.63 16 29 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.04 0.48 7.75 -2.39 -0.02 0.46 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 1.23 5.78 -2.39 -0.01 1.21 16 33 H 0.10 0.57 7.43 -2.39 -0.02 0.56 16 34 H 0.42 1.05 8.19 -92.70 -0.76 0.29 16 35 H 0.40 4.54 8.93 -92.71 -0.83 3.71 16 36 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 0.98 7.87 -2.39 -0.02 0.96 16 38 H 0.08 2.12 7.55 -2.39 -0.02 2.10 16 39 H 0.06 2.04 7.01 -2.39 -0.02 2.02 16 40 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.06 1.44 7.70 -2.38 -0.02 1.42 16 42 H 0.03 1.52 7.54 -2.39 -0.02 1.50 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.02 1.14 7.20 -2.38 -0.02 1.12 16 45 H 0.02 1.02 7.57 -2.39 -0.02 1.01 16 46 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 47 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.12 1.26 7.75 -2.39 -0.02 1.24 16 49 H 0.14 2.86 8.14 -2.38 -0.02 2.84 16 50 H 0.08 2.07 7.15 -2.39 -0.02 2.05 16 Total: -1.00 -89.82 391.74 -2.93 -92.75 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -0.68 Total: 14.62 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 5.64 Total: -4.15 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -8.65 Total: -103.60 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.12 Total: -45.95 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Total: -89.82 -2.93 -92.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.206 kcal (2) G-P(sol) polarization free energy of solvation -89.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds