Wall clock time and date at job start Tue Mar 31 2020 22:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47267 * 2 1 4 4 C 1.52999 * 109.46984 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47037 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00144 * 179.97438 * 5 4 3 7 7 O 1.21587 * 119.99906 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99979 * 179.97438 * 6 5 4 9 9 C 1.47679 * 134.44977 * 180.02562 * 8 6 5 10 10 C 1.53393 * 85.95981 * 155.71678 * 9 8 6 11 11 C 1.47680 * 134.45336 * 359.95674 * 8 6 5 12 12 C 1.52552 * 113.84235 * 138.00910 * 10 9 8 13 13 N 1.46276 * 109.56364 * 176.53206 * 12 10 9 14 14 C 1.46502 * 118.71139 * 163.92353 * 13 12 10 15 15 C 1.52993 * 109.47055 * 90.00201 * 14 13 12 16 16 C 1.50704 * 109.47121 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99994 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00014 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99841 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99907 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47069 * 90.00363 * 20 18 16 22 22 H 1.48496 * 109.47350 * 210.00237 * 20 18 16 23 23 H 1.48500 * 109.47268 * 330.00342 * 20 18 16 24 24 C 1.33714 * 122.57160 * 343.90101 * 13 12 10 25 25 O 1.21281 * 118.38321 * 183.23645 * 24 13 12 26 26 C 1.50164 * 123.23608 * 3.26194 * 24 13 12 27 27 O 1.42674 * 113.79276 * 268.69333 * 10 9 8 28 28 H 1.09007 * 109.46938 * 59.99488 * 1 2 3 29 29 H 1.08999 * 109.47485 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47222 * 300.00170 * 1 2 3 31 31 H 1.08993 * 109.47118 * 240.00294 * 2 1 3 32 32 H 1.09001 * 109.47076 * 119.99806 * 2 1 3 33 33 H 1.08999 * 109.47134 * 60.00388 * 3 2 1 34 34 H 1.09001 * 109.46914 * 299.99906 * 3 2 1 35 35 H 1.09007 * 109.46982 * 60.00512 * 4 3 2 36 36 H 1.08997 * 109.47156 * 300.00289 * 4 3 2 37 37 H 0.97000 * 120.00132 * 0.02562 * 5 4 3 38 38 H 1.09004 * 113.79612 * 41.45570 * 9 8 6 39 39 H 1.08997 * 113.79794 * 269.97564 * 9 8 6 40 40 H 1.09000 * 113.79599 * 90.01961 * 11 8 6 41 41 H 1.08998 * 113.79242 * 318.54574 * 11 8 6 42 42 H 1.08998 * 109.45161 * 56.50631 * 12 10 9 43 43 H 1.08998 * 109.45669 * 296.56268 * 12 10 9 44 44 H 1.09002 * 109.46641 * 210.00459 * 14 13 12 45 45 H 1.08996 * 109.47135 * 330.00115 * 14 13 12 46 46 H 1.09002 * 109.47607 * 299.99667 * 15 14 13 47 47 H 1.09003 * 109.47556 * 59.99738 * 15 14 13 48 48 H 0.97006 * 119.99630 * 179.97438 * 19 18 16 49 49 H 1.09001 * 109.35610 * 102.57694 * 26 24 13 50 50 H 1.09003 * 109.35174 * 222.28063 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 5.3835 3.0699 0.0010 7 8 6.1735 2.1457 0.0018 8 7 5.8327 4.3406 -0.0001 9 6 7.1714 4.9642 -0.0001 10 6 6.4848 6.1822 -0.6310 11 6 5.1836 5.6671 -0.0031 12 6 6.9559 7.5179 -0.0642 13 7 6.3058 8.6124 -0.7848 14 6 6.3248 9.9530 -0.1944 15 6 7.5687 10.7038 -0.6738 16 6 7.5879 12.0831 -0.0669 17 1 6.7927 12.3930 0.5948 18 6 8.6214 12.9490 -0.3557 19 7 9.5900 12.5713 -1.1611 20 14 8.6455 14.6584 0.3970 21 1 9.3710 14.6187 1.6921 22 1 9.3327 15.5964 -0.5267 23 1 7.2522 15.1191 0.6240 24 6 5.6953 8.4371 -1.9615 25 8 5.2327 9.4085 -2.5213 26 6 5.5538 7.0969 -2.6237 27 8 6.4805 6.1658 -2.0576 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6768 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9337 0.9285 -0.8892 36 1 3.9329 0.9287 0.8908 37 1 3.4281 3.5610 -0.0003 38 1 7.8861 4.4717 -0.6595 39 1 7.5694 5.1514 0.9972 40 1 4.9890 6.0637 0.9934 41 1 4.3200 5.7326 -0.6649 42 1 8.0368 7.5997 -0.1783 43 1 6.6972 7.5752 0.9931 44 1 5.4314 10.4974 -0.5004 45 1 6.3460 9.8712 0.8922 46 1 8.4621 10.1594 -0.3678 47 1 7.5475 10.7856 -1.7605 48 1 10.3168 13.1807 -1.3645 49 1 4.5382 6.7282 -2.4798 50 1 5.7533 7.1982 -3.6905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274161792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:04 Heat of formation + Delta-G solvation = -72.372392 kcal Electronic energy + Delta-G solvation = -29786.163356 eV Core-core repulsion = 25621.948363 eV Total energy + Delta-G solvation = -4164.214994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.53326 -39.91890 -38.65031 -36.67851 -36.15830 -35.49649 -34.00963 -33.10214 -30.94185 -30.05744 -28.99374 -27.72525 -26.59850 -26.21108 -24.59863 -23.63547 -22.09571 -21.78385 -20.87246 -19.94972 -18.66264 -18.20811 -17.63201 -16.81328 -16.55048 -16.44493 -16.14338 -15.70214 -15.65108 -15.33953 -14.81781 -14.59277 -14.44152 -14.23369 -14.15920 -13.75352 -13.61960 -13.29581 -13.19921 -12.95774 -12.83869 -12.62033 -12.55910 -12.27474 -12.00595 -11.72617 -11.61651 -11.59657 -11.37064 -11.18695 -11.13428 -10.94299 -10.75093 -10.57311 -10.24318 -9.94301 -9.88600 -9.47781 -9.38925 -9.08880 -8.86467 -8.38287 -8.20916 -6.03221 -4.06758 2.10420 2.77356 2.93618 3.04607 3.23365 3.30101 3.37009 3.40396 3.50071 3.91031 4.20523 4.32675 4.43273 4.43806 4.55528 4.63599 4.69047 4.87704 4.89832 4.90512 5.02041 5.09427 5.13585 5.19306 5.28790 5.29097 5.29743 5.33056 5.38221 5.39952 5.41141 5.52456 5.62250 5.68358 5.74886 5.81511 5.98831 6.17774 6.42278 6.55618 6.72801 6.80182 6.82148 7.52739 7.65965 7.70657 7.84954 7.96156 8.30092 8.33922 8.42031 8.99680 9.57261 11.08100 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.001972 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.533726 B =14192.837496 C =14488.093304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.132 4.132 4 C 0.138 3.862 5 N -0.746 5.746 6 C 0.732 3.268 7 O -0.588 6.588 8 N -0.657 5.657 9 C 0.152 3.848 10 C 0.065 3.935 11 C 0.079 3.921 12 C 0.102 3.898 13 N -0.597 5.597 14 C 0.114 3.886 15 C 0.014 3.986 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.479 3.521 25 O -0.535 6.535 26 C 0.051 3.949 27 O -0.337 6.337 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.395 0.605 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.016 0.984 47 H 0.023 0.977 48 H 0.261 0.739 49 H 0.084 0.916 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.872 -23.434 4.193 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.170 4.170 4 C 0.014 3.986 5 N -0.401 5.401 6 C 0.435 3.565 7 O -0.465 6.465 8 N -0.397 5.397 9 C 0.029 3.971 10 C 0.023 3.977 11 C -0.045 4.045 12 C -0.022 4.022 13 N -0.330 5.330 14 C -0.006 4.006 15 C -0.024 4.024 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.266 3.734 25 O -0.412 6.412 26 C -0.028 4.028 27 O -0.254 6.254 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.228 0.772 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.034 0.966 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.331 -23.932 3.701 28.139 hybrid contribution -0.329 1.518 0.499 1.632 sum -14.659 -22.414 4.200 27.110 Atomic orbital electron populations 1.21768 0.95444 1.01856 1.01945 1.21426 0.96136 0.95759 1.02620 1.21843 0.94097 0.98209 1.02867 1.21236 0.93316 0.81614 1.02435 1.45057 1.05231 1.09041 1.80760 1.15298 0.82528 0.81243 0.77413 1.90938 1.55125 1.42038 1.58445 1.48890 1.09717 1.02685 1.78417 1.22964 0.86295 0.86971 1.00868 1.22990 0.96472 0.94923 0.83334 1.23823 0.97703 0.81202 1.01755 1.21878 0.99601 0.83844 0.96888 1.47698 1.53887 1.10813 1.20580 1.21978 1.02660 0.79730 0.96281 1.19358 0.91098 0.94400 0.97577 1.21073 1.07868 0.98505 1.28668 0.92539 1.24998 0.95564 0.98583 0.95111 1.69972 1.11326 1.36220 1.35524 0.86557 0.78167 0.84127 0.78921 1.20659 1.21192 1.19832 1.20607 0.79381 0.91651 0.81797 1.90778 1.48582 1.40299 1.61580 1.22847 0.94555 0.85418 1.00025 1.88143 1.61155 1.59691 1.16457 0.92630 0.92544 0.92668 0.91559 0.91593 0.91264 0.91218 0.91582 0.91600 0.77154 0.88266 0.87581 0.88148 0.89728 0.89506 0.89070 0.90585 0.91619 0.96590 0.95887 0.92932 0.89835 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.12 -0.56 5.93 -26.73 -0.16 -0.72 16 3 C -0.13 -0.66 5.33 -26.73 -0.14 -0.80 16 4 C 0.14 1.05 5.67 -4.04 -0.02 1.03 16 5 N -0.75 -6.49 5.56 -65.22 -0.36 -6.85 16 6 C 0.73 8.95 8.76 -86.91 -0.76 8.19 16 7 O -0.59 -9.59 17.07 5.29 0.09 -9.50 16 8 N -0.66 -6.76 3.61 -186.87 -0.67 -7.43 16 9 C 0.15 1.45 8.24 -3.20 -0.03 1.42 16 10 C 0.06 0.66 1.16 -90.55 -0.10 0.56 16 11 C 0.08 0.64 7.55 -3.21 -0.02 0.61 16 12 C 0.10 1.21 5.88 -4.39 -0.03 1.18 16 13 N -0.60 -9.70 2.84 -174.68 -0.50 -10.20 16 14 C 0.11 2.25 5.20 -4.04 -0.02 2.23 16 15 C 0.01 0.35 5.29 -27.88 -0.15 0.20 16 16 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 20 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.48 8.10 7.57 -11.72 -0.09 8.01 16 25 O -0.53 -11.47 16.33 5.56 0.09 -11.38 16 26 C 0.05 0.62 6.65 35.75 0.24 0.86 16 27 O -0.34 -4.20 10.66 -35.23 -0.38 -4.58 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.22 8.14 -51.92 -0.42 -0.20 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.40 2.54 8.08 -40.82 -0.33 2.21 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.11 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.10 0.63 7.91 -51.93 -0.41 0.22 16 41 H 0.08 0.61 7.02 -51.93 -0.36 0.25 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 0.83 7.77 -51.93 -0.40 0.43 16 44 H 0.08 1.62 7.29 -51.93 -0.38 1.24 16 45 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.08 0.81 7.16 -51.93 -0.37 0.44 16 50 H 0.13 1.53 8.14 -51.93 -0.42 1.10 16 LS Contribution 409.27 15.07 6.17 6.17 Total: -1.00 -37.19 409.27 -9.73 -46.91 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -8.55 Total: -2.78 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -1.33 Total: 9.22 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.80 Total: -50.52 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.19 Total: -25.46 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.19 -9.73 -46.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274161792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.461 kcal (2) G-P(sol) polarization free energy of solvation -37.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds