Wall clock time and date at job start Tue Mar 31 2020 22:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.34769 * 120.00241 * 180.02562 * 5 4 3 7 7 O 1.21587 * 120.00166 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00187 * 180.02562 * 6 5 4 9 9 C 1.47164 * 136.00426 * 359.61962 * 8 6 5 10 10 C 1.53188 * 87.76863 * 153.42083 * 9 8 6 11 11 C 1.47166 * 136.00156 * 179.97438 * 8 6 5 12 12 C 1.52653 * 113.93764 * 139.43774 * 10 9 8 13 13 O 1.43409 * 108.27094 * 178.16194 * 12 10 9 14 14 C 1.42811 * 113.34872 * 294.61287 * 13 12 10 15 15 C 1.50284 * 110.54163 * 51.38577 * 14 13 12 16 16 O 1.21277 * 118.99324 * 161.41088 * 15 14 13 17 17 N 1.34316 * 122.00690 * 341.39653 * 15 14 13 18 18 C 1.46499 * 119.40768 * 182.04573 * 17 15 14 19 19 C 1.53000 * 109.47413 * 269.97181 * 18 17 15 20 20 C 1.50697 * 109.47369 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00191 * 180.02562 * 20 19 18 23 23 N 1.31524 * 119.99982 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00308 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.46844 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47079 * 119.99537 * 24 22 20 27 27 H 1.48500 * 109.47181 * 239.99720 * 24 22 20 28 28 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 29 29 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 30 30 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 32 32 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 33 33 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 34 34 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 35 35 H 1.09000 * 109.47050 * 299.99699 * 4 3 2 36 36 H 1.09001 * 109.46801 * 59.99811 * 4 3 2 37 37 H 0.97010 * 119.99910 * 359.97438 * 5 4 3 38 38 H 1.09001 * 113.49361 * 268.12657 * 9 8 6 39 39 H 1.09009 * 113.48598 * 38.62861 * 9 8 6 40 40 H 1.08992 * 113.49011 * 321.36778 * 11 8 6 41 41 H 1.09006 * 113.48859 * 91.87805 * 11 8 6 42 42 H 1.09000 * 109.70944 * 297.87501 * 12 10 9 43 43 H 1.09003 * 109.70015 * 58.48807 * 12 10 9 44 44 H 1.08996 * 109.26026 * 291.11274 * 14 13 12 45 45 H 1.08997 * 109.25726 * 171.66250 * 14 13 12 46 46 H 1.09002 * 109.47356 * 29.97875 * 18 17 15 47 47 H 1.09009 * 109.47031 * 149.97929 * 18 17 15 48 48 H 1.09002 * 109.47426 * 300.00651 * 19 18 17 49 49 H 1.09009 * 109.46412 * 60.00369 * 19 18 17 50 50 H 0.96993 * 119.99868 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 5.3835 3.0699 -0.0024 7 8 6.1736 2.1457 -0.0025 8 7 5.8328 4.3405 -0.0025 9 6 5.2220 5.6794 -0.0083 10 6 6.4885 6.1946 0.6824 11 6 7.1495 4.9978 -0.0030 12 6 6.9682 7.5489 0.1663 13 8 8.1263 7.9327 0.9200 14 6 7.8494 8.1723 2.3004 15 6 7.1054 7.0114 2.8982 16 8 7.0865 6.8836 4.1041 17 7 6.4606 6.1114 2.1377 18 6 5.7156 5.0271 2.7822 19 6 6.6380 3.8228 2.9819 20 6 5.8715 2.7072 3.6443 21 1 4.8306 2.8436 3.8979 22 6 6.4992 1.5128 3.9275 23 7 7.7669 1.3468 3.6191 24 14 5.5488 0.1296 4.7479 25 1 4.1498 0.5653 4.9888 26 1 5.5508 -1.0642 3.8646 27 1 6.1905 -0.2117 6.0429 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6768 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9338 0.9285 0.8891 36 1 3.9330 0.9286 -0.8909 37 1 3.4281 3.5610 -0.0016 38 1 5.0767 6.0864 -1.0090 39 1 4.3278 5.7517 0.6109 40 1 7.8873 4.4931 0.6206 41 1 7.5231 5.2213 -1.0024 42 1 7.2264 7.4694 -0.8897 43 1 6.1815 8.2918 0.2979 44 1 7.2444 9.0740 2.3945 45 1 8.7882 8.3123 2.8363 46 1 5.3454 5.3657 3.7499 47 1 4.8742 4.7395 2.1517 48 1 7.0082 3.4843 2.0142 49 1 7.4794 4.1104 3.6125 50 1 8.2084 0.5064 3.8180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274163167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:10 Heat of formation + Delta-G solvation = -57.985123 kcal Electronic energy + Delta-G solvation = -32126.376356 eV Core-core repulsion = 27962.785242 eV Total energy + Delta-G solvation = -4163.591115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.47473 -39.36899 -38.02654 -37.37022 -35.85682 -34.36859 -33.36254 -32.76838 -30.77728 -29.68188 -28.84266 -27.38345 -26.24957 -25.92796 -24.16319 -23.15266 -21.89487 -21.25358 -21.00246 -19.59469 -18.26788 -17.75592 -17.51493 -16.68079 -16.13845 -15.97734 -15.83805 -15.54400 -15.30682 -14.82690 -14.53535 -14.30171 -14.22250 -13.98740 -13.74353 -13.52373 -13.25168 -13.05989 -12.79860 -12.67861 -12.42581 -12.31865 -12.17786 -11.93513 -11.45728 -11.40872 -11.26508 -11.16828 -11.07848 -10.87602 -10.83768 -10.65241 -10.59738 -10.41613 -9.79855 -9.74226 -9.54918 -9.29013 -8.89940 -8.64334 -8.27178 -8.16671 -8.11770 -5.83185 -3.84414 2.75801 2.76679 3.04837 3.38927 3.45081 3.47733 3.54968 3.82465 4.09186 4.30232 4.39879 4.58071 4.68912 4.71904 4.86079 4.91064 5.01372 5.05172 5.21439 5.22796 5.28282 5.35991 5.37435 5.50385 5.51300 5.54645 5.63703 5.71309 5.75127 5.81381 5.91213 5.98258 6.06508 6.13844 6.18227 6.27601 6.37383 6.48808 6.58697 6.81679 6.92226 6.95723 7.51054 7.65607 7.82582 8.02091 8.15324 8.38581 8.48146 8.54572 9.17724 9.20749 9.77465 11.28714 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.004647 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.329114 B = 6023.494033 C = 7853.812836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.129 4.129 4 C 0.140 3.860 5 N -0.743 5.743 6 C 0.745 3.255 7 O -0.557 6.557 8 N -0.656 5.656 9 C 0.096 3.904 10 C 0.097 3.903 11 C 0.120 3.880 12 C 0.070 3.930 13 O -0.366 6.366 14 C 0.049 3.951 15 C 0.483 3.517 16 O -0.529 6.529 17 N -0.573 5.573 18 C 0.120 3.880 19 C 0.014 3.986 20 C -0.512 4.512 21 H 0.048 0.952 22 C 0.067 3.933 23 N -0.883 5.883 24 Si 0.884 3.116 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.286 1.286 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.388 0.612 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.129 0.871 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.036 0.964 49 H 0.012 0.988 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.221 11.640 -13.447 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.167 4.167 4 C 0.016 3.984 5 N -0.399 5.399 6 C 0.448 3.552 7 O -0.431 6.431 8 N -0.397 5.397 9 C -0.029 4.029 10 C 0.008 3.992 11 C -0.005 4.005 12 C -0.008 4.008 13 O -0.283 6.283 14 C -0.030 4.030 15 C 0.270 3.730 16 O -0.406 6.406 17 N -0.305 5.305 18 C 0.000 4.000 19 C -0.024 4.024 20 C -0.551 4.551 21 H 0.066 0.934 22 C -0.135 4.135 23 N -0.522 5.522 24 Si 0.713 3.287 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.212 1.212 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.220 0.780 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.147 0.853 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.054 0.946 49 H 0.030 0.970 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.387 10.459 -12.848 19.041 hybrid contribution -1.089 -0.641 0.605 1.401 sum -10.476 9.818 -12.243 18.869 Atomic orbital electron populations 1.21758 0.95779 1.01554 1.01678 1.21436 0.95757 0.96227 1.02710 1.21800 0.94737 0.97767 1.02352 1.21166 0.92599 0.82053 1.02582 1.44862 1.05094 1.08426 1.81498 1.14933 0.82408 0.80605 0.77216 1.91010 1.54671 1.41288 1.56154 1.48371 1.09543 1.02317 1.79446 1.23217 0.97160 0.82496 1.00042 1.21943 0.97988 0.96309 0.82926 1.23261 0.88034 0.89196 0.99964 1.22802 0.88890 0.92118 0.96988 1.88167 1.32141 1.88699 1.19322 1.22803 1.02429 0.95417 0.82376 1.20973 0.80051 0.84234 0.87729 1.90770 1.60706 1.74934 1.14193 1.47461 1.50940 1.28592 1.03545 1.21949 0.95045 0.87044 0.95997 1.19453 0.94537 0.90196 0.98198 1.20888 0.96455 0.98200 1.39559 0.93411 1.24877 0.94731 0.98205 0.95703 1.69969 1.10074 1.24992 1.47154 0.86664 0.80103 0.82808 0.79154 1.19948 1.21038 1.21192 0.92692 0.92908 0.92779 0.91750 0.91394 0.91261 0.91782 0.90979 0.92195 0.77996 0.88869 0.90123 0.88771 0.89467 0.86317 0.91307 0.89710 0.85346 0.91336 0.92029 0.94552 0.96970 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.30 5.93 -26.73 -0.16 -1.46 16 3 C -0.13 -1.43 5.33 -26.73 -0.14 -1.57 16 4 C 0.14 2.15 5.67 -4.04 -0.02 2.12 16 5 N -0.74 -11.69 5.56 -65.22 -0.36 -12.05 16 6 C 0.75 14.66 7.58 -86.93 -0.66 14.00 16 7 O -0.56 -14.22 16.70 5.29 0.09 -14.13 16 8 N -0.66 -10.54 1.98 -190.84 -0.38 -10.92 16 9 C 0.10 1.03 6.88 -8.10 -0.06 0.98 16 10 C 0.10 1.25 1.68 -133.01 -0.22 1.02 16 11 C 0.12 1.83 7.16 -8.23 -0.06 1.77 16 12 C 0.07 0.62 6.14 36.98 0.23 0.85 16 13 O -0.37 -4.24 10.84 -35.23 -0.38 -4.62 16 14 C 0.05 0.60 6.93 35.80 0.25 0.85 16 15 C 0.48 8.51 7.64 -11.39 -0.09 8.42 16 16 O -0.53 -11.76 16.49 5.56 0.09 -11.67 16 17 N -0.57 -9.96 2.69 -160.36 -0.43 -10.39 16 18 C 0.12 2.57 4.50 -4.04 -0.02 2.55 16 19 C 0.01 0.38 4.86 -27.88 -0.14 0.24 16 20 C -0.51 -15.15 9.11 -34.44 -0.31 -15.47 16 21 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 22 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 23 N -0.88 -28.49 13.29 55.43 0.74 -27.76 16 24 Si 0.88 23.02 29.54 -169.99 -5.02 18.00 16 25 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.39 4.78 8.19 -40.82 -0.33 4.45 16 38 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.08 0.85 7.08 -51.92 -0.37 0.48 16 40 H 0.09 1.89 6.82 -51.93 -0.35 1.54 16 41 H 0.09 1.01 7.89 -51.93 -0.41 0.60 16 42 H 0.12 0.71 7.84 -51.93 -0.41 0.30 16 43 H 0.07 0.46 8.13 -51.93 -0.42 0.03 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.07 1.59 7.36 -51.93 -0.38 1.21 16 47 H 0.06 1.22 5.36 -51.92 -0.28 0.94 16 48 H 0.04 1.05 4.27 -51.93 -0.22 0.83 16 49 H 0.01 0.38 8.14 -51.92 -0.42 -0.05 16 50 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -40.51 397.98 -9.00 -49.51 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.21 Total: 2.75 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: -1.13 Total: 15.29 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.44 Total: -61.12 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.20 Total: -30.42 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -40.51 -9.00 -49.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274163167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.475 kcal (2) G-P(sol) polarization free energy of solvation -40.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds