Wall clock time and date at job start Tue Mar 31 2020 22:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.34769 * 120.00241 * 180.02562 * 5 4 3 7 7 O 1.21587 * 120.00166 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00187 * 180.02562 * 6 5 4 9 9 C 1.47164 * 136.00426 * 359.61962 * 8 6 5 10 10 C 1.53188 * 87.76863 * 153.42083 * 9 8 6 11 11 C 1.47166 * 136.00156 * 179.97438 * 8 6 5 12 12 C 1.52653 * 113.93764 * 139.43774 * 10 9 8 13 13 O 1.43409 * 108.27094 * 178.16194 * 12 10 9 14 14 C 1.42811 * 113.34872 * 294.61287 * 13 12 10 15 15 C 1.50284 * 110.54163 * 51.38577 * 14 13 12 16 16 O 1.21277 * 118.99324 * 161.41088 * 15 14 13 17 17 N 1.34316 * 122.00690 * 341.39653 * 15 14 13 18 18 C 1.46499 * 119.40768 * 182.04573 * 17 15 14 19 19 C 1.53000 * 109.47413 * 269.97181 * 18 17 15 20 20 C 1.50697 * 109.47369 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00191 * 180.02562 * 20 19 18 23 23 N 1.31524 * 119.99982 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00308 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.46844 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47079 * 119.99537 * 24 22 20 27 27 H 1.48500 * 109.47181 * 239.99720 * 24 22 20 28 28 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 29 29 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 30 30 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 32 32 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 33 33 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 34 34 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 35 35 H 1.09000 * 109.47050 * 299.99699 * 4 3 2 36 36 H 1.09001 * 109.46801 * 59.99811 * 4 3 2 37 37 H 0.97010 * 119.99910 * 359.97438 * 5 4 3 38 38 H 1.09001 * 113.49361 * 268.12657 * 9 8 6 39 39 H 1.09009 * 113.48598 * 38.62861 * 9 8 6 40 40 H 1.08992 * 113.49011 * 321.36778 * 11 8 6 41 41 H 1.09006 * 113.48859 * 91.87805 * 11 8 6 42 42 H 1.09000 * 109.70944 * 297.87501 * 12 10 9 43 43 H 1.09003 * 109.70015 * 58.48807 * 12 10 9 44 44 H 1.08996 * 109.26026 * 291.11274 * 14 13 12 45 45 H 1.08997 * 109.25726 * 171.66250 * 14 13 12 46 46 H 1.09002 * 109.47356 * 29.97875 * 18 17 15 47 47 H 1.09009 * 109.47031 * 149.97929 * 18 17 15 48 48 H 1.09002 * 109.47426 * 300.00651 * 19 18 17 49 49 H 1.09009 * 109.46412 * 60.00369 * 19 18 17 50 50 H 0.96993 * 119.99868 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 5.3835 3.0699 -0.0024 7 8 6.1736 2.1457 -0.0025 8 7 5.8328 4.3405 -0.0025 9 6 5.2220 5.6794 -0.0083 10 6 6.4885 6.1946 0.6824 11 6 7.1495 4.9978 -0.0030 12 6 6.9682 7.5489 0.1663 13 8 8.1263 7.9327 0.9200 14 6 7.8494 8.1723 2.3004 15 6 7.1054 7.0114 2.8982 16 8 7.0865 6.8836 4.1041 17 7 6.4606 6.1114 2.1377 18 6 5.7156 5.0271 2.7822 19 6 6.6380 3.8228 2.9819 20 6 5.8715 2.7072 3.6443 21 1 4.8306 2.8436 3.8979 22 6 6.4992 1.5128 3.9275 23 7 7.7669 1.3468 3.6191 24 14 5.5488 0.1296 4.7479 25 1 4.1498 0.5653 4.9888 26 1 5.5508 -1.0642 3.8646 27 1 6.1905 -0.2117 6.0429 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6768 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9338 0.9285 0.8891 36 1 3.9330 0.9286 -0.8909 37 1 3.4281 3.5610 -0.0016 38 1 5.0767 6.0864 -1.0090 39 1 4.3278 5.7517 0.6109 40 1 7.8873 4.4931 0.6206 41 1 7.5231 5.2213 -1.0024 42 1 7.2264 7.4694 -0.8897 43 1 6.1815 8.2918 0.2979 44 1 7.2444 9.0740 2.3945 45 1 8.7882 8.3123 2.8363 46 1 5.3454 5.3657 3.7499 47 1 4.8742 4.7395 2.1517 48 1 7.0082 3.4843 2.0142 49 1 7.4794 4.1104 3.6125 50 1 8.2084 0.5064 3.8180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274163167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:09 Heat of formation + Delta-G solvation = -90.339817 kcal Electronic energy + Delta-G solvation = -32127.779361 eV Core-core repulsion = 27962.785242 eV Total energy + Delta-G solvation = -4164.994120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.68156 -40.73532 -39.41363 -38.42117 -37.02232 -36.12888 -34.85093 -34.55423 -32.31300 -31.22267 -29.84835 -28.73323 -27.40306 -27.10753 -25.94038 -24.19626 -23.19892 -22.92172 -22.24005 -20.90875 -19.48221 -18.99937 -18.82660 -18.44058 -17.54818 -17.40687 -17.05052 -16.79897 -16.57599 -16.37066 -15.99743 -15.68655 -15.45906 -15.30744 -14.74226 -14.71738 -14.52805 -14.44158 -14.20518 -14.17018 -13.92263 -13.74785 -13.30959 -13.25109 -13.01017 -12.83177 -12.69615 -12.50209 -12.44456 -12.16394 -12.06337 -11.99027 -11.84471 -11.78589 -11.51719 -11.39048 -11.32233 -11.18910 -10.57760 -10.40808 -10.12262 -9.75098 -9.43099 -8.22130 -6.31901 1.25496 1.28854 1.39053 1.41088 1.51506 1.79008 2.34561 2.36879 2.69601 2.96597 3.13449 3.23388 3.37653 3.69016 3.75183 3.89549 4.01971 4.12363 4.16503 4.26851 4.36423 4.41836 4.45054 4.51516 4.55593 4.59522 4.63956 4.65241 4.71216 4.78650 4.79554 4.89208 4.91445 4.94647 4.96352 5.08997 5.17653 5.24874 5.36020 5.43700 5.45116 5.60490 5.62539 5.79180 5.88241 6.15815 6.28145 6.43479 6.82104 7.03750 7.18417 7.35661 7.75908 8.90624 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.004647 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.329114 B = 6023.494033 C = 7853.812836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C -0.113 4.113 4 C 0.142 3.858 5 N -0.728 5.728 6 C 0.734 3.266 7 O -0.633 6.633 8 N -0.668 5.668 9 C 0.110 3.890 10 C 0.093 3.907 11 C 0.110 3.890 12 C 0.074 3.926 13 O -0.374 6.374 14 C 0.065 3.935 15 C 0.471 3.529 16 O -0.590 6.590 17 N -0.579 5.579 18 C 0.142 3.858 19 C 0.031 3.969 20 C -0.525 4.525 21 H 0.053 0.947 22 C 0.004 3.996 23 N -0.928 5.928 24 Si 0.955 3.045 25 H -0.254 1.254 26 H -0.282 1.282 27 H -0.278 1.278 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.023 0.977 36 H 0.054 0.946 37 H 0.408 0.592 38 H 0.158 0.842 39 H 0.089 0.911 40 H 0.028 0.972 41 H 0.133 0.867 42 H 0.161 0.839 43 H 0.110 0.890 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.046 0.954 47 H 0.082 0.918 48 H 0.018 0.982 49 H -0.047 1.047 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.346 14.624 -16.042 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.151 4.151 4 C 0.017 3.983 5 N -0.384 5.384 6 C 0.437 3.563 7 O -0.513 6.513 8 N -0.407 5.407 9 C -0.013 4.013 10 C 0.006 3.994 11 C -0.015 4.015 12 C -0.003 4.003 13 O -0.292 6.292 14 C -0.015 4.015 15 C 0.261 3.739 16 O -0.470 6.470 17 N -0.309 5.309 18 C 0.019 3.981 19 C -0.007 4.007 20 C -0.563 4.563 21 H 0.071 0.929 22 C -0.194 4.194 23 N -0.568 5.568 24 Si 0.780 3.220 25 H -0.178 1.178 26 H -0.208 1.208 27 H -0.204 1.204 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.243 0.757 38 H 0.175 0.825 39 H 0.107 0.893 40 H 0.046 0.954 41 H 0.151 0.849 42 H 0.179 0.821 43 H 0.128 0.872 44 H 0.146 0.854 45 H 0.150 0.850 46 H 0.064 0.936 47 H 0.100 0.900 48 H 0.036 0.964 49 H -0.028 1.028 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.567 13.544 -15.485 24.107 hybrid contribution -0.028 -1.559 1.370 2.076 sum -12.595 11.985 -14.115 22.394 Atomic orbital electron populations 1.21720 0.93899 1.02228 1.02432 1.21469 0.97326 0.95641 1.02009 1.21726 0.90963 0.98594 1.03817 1.21157 0.95577 0.81576 0.99996 1.44714 1.04185 1.09256 1.80291 1.15313 0.82925 0.81117 0.76914 1.90948 1.56722 1.44168 1.59457 1.48477 1.11016 1.03003 1.78244 1.23618 0.95937 0.78484 1.03217 1.22416 0.99164 0.98095 0.79771 1.23547 0.86711 0.89641 1.01552 1.23235 0.89164 0.89684 0.98193 1.88179 1.33896 1.88507 1.18581 1.22770 1.02340 0.93670 0.82674 1.22241 0.79205 0.85243 0.87211 1.90735 1.62629 1.76632 1.17028 1.47499 1.50308 1.27067 1.06061 1.21304 0.94444 0.86210 0.96116 1.19183 0.93509 0.92404 0.95571 1.21306 0.96780 0.99039 1.39198 0.92853 1.25885 0.95687 1.01360 0.96425 1.70144 1.12164 1.25728 1.48769 0.85551 0.79533 0.78985 0.77977 1.17765 1.20764 1.20364 0.92687 0.91346 0.92241 0.91340 0.93419 0.91088 0.88770 0.95851 0.92721 0.75652 0.82483 0.89250 0.95373 0.84931 0.82124 0.87244 0.85389 0.85047 0.93563 0.90018 0.96416 1.02827 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.52 16 2 C -0.13 -2.54 5.93 30.60 0.18 -2.36 16 3 C -0.11 -2.35 5.33 30.60 0.16 -2.19 16 4 C 0.14 4.45 5.67 86.38 0.49 4.94 16 5 N -0.73 -22.72 5.56 -478.53 -2.66 -25.38 16 6 C 0.73 29.69 7.58 179.06 1.36 31.05 16 7 O -0.63 -34.65 16.70 -3.99 -0.07 -34.72 16 8 N -0.67 -20.93 1.98 -875.97 -1.74 -22.66 16 9 C 0.11 1.87 6.88 83.39 0.57 2.44 16 10 C 0.09 2.12 1.68 3.91 0.01 2.12 16 11 C 0.11 3.29 7.16 83.30 0.60 3.88 16 12 C 0.07 0.88 6.14 71.87 0.44 1.32 16 13 O -0.37 -7.17 10.84 -148.98 -1.62 -8.79 16 14 C 0.06 1.41 6.93 71.11 0.49 1.90 16 15 C 0.47 16.63 7.64 87.60 0.67 17.30 16 16 O -0.59 -27.46 16.49 -3.02 -0.05 -27.51 16 17 N -0.58 -20.04 2.69 -779.91 -2.10 -22.14 16 18 C 0.14 6.31 4.50 86.38 0.39 6.70 16 19 C 0.03 1.83 4.86 29.85 0.14 1.98 16 20 C -0.52 -32.79 9.11 25.60 0.23 -32.56 16 21 H 0.05 3.19 7.74 -2.91 -0.02 3.16 16 22 C 0.00 0.28 5.46 84.65 0.46 0.74 16 23 N -0.93 -63.87 13.29 21.45 0.28 -63.59 16 24 Si 0.96 49.33 29.54 68.60 2.03 51.36 16 25 H -0.25 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16 27 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 28 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.41 9.12 8.19 -92.70 -0.76 8.36 16 38 H 0.16 0.88 8.09 -2.39 -0.02 0.86 16 39 H 0.09 1.45 7.08 -2.38 -0.02 1.43 16 40 H 0.03 1.21 6.82 -2.39 -0.02 1.19 16 41 H 0.13 2.69 7.89 -2.38 -0.02 2.67 16 42 H 0.16 0.66 7.84 -2.39 -0.02 0.64 16 43 H 0.11 0.57 8.13 -2.39 -0.02 0.55 16 44 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.13 2.81 8.14 -2.39 -0.02 2.80 16 46 H 0.05 2.25 7.36 -2.39 -0.02 2.23 16 47 H 0.08 3.26 5.36 -2.38 -0.01 3.24 16 48 H 0.02 1.11 4.27 -2.39 -0.01 1.10 16 49 H -0.05 -3.25 8.14 -2.38 -0.02 -3.27 16 50 H 0.26 16.75 8.31 -92.71 -0.77 15.98 16 Total: -1.00 -104.04 397.98 1.18 -102.85 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.19 Total: 14.82 kcal Atomic # 6 Polarization: 28.85 SS G_CDS: 6.91 Total: 35.76 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -6.21 Total: -133.77 kcal Atomic # 8 Polarization: -69.28 SS G_CDS: -1.73 Total: -71.01 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.36 kcal Total: -104.04 1.18 -102.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274163167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.515 kcal (2) G-P(sol) polarization free energy of solvation -104.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds