Wall clock time and date at job start Wed Apr 1 2020 00:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47553 * 2 1 4 4 N 1.46496 * 109.47553 * 180.02562 * 3 2 1 5 5 C 1.46759 * 124.35127 * 89.99962 * 4 3 2 6 6 C 1.54484 * 105.47316 * 163.00526 * 5 4 3 7 7 H 1.09001 * 110.96893 * 267.29623 * 6 5 4 8 8 C 1.50704 * 110.96594 * 143.53651 * 6 5 4 9 9 O 1.21276 * 120.00013 * 359.97438 * 8 6 5 10 10 N 1.34778 * 119.99636 * 179.97438 * 8 6 5 11 11 C 1.46500 * 119.99782 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46963 * 179.97438 * 11 10 8 13 13 O 1.42901 * 110.88577 * 61.12300 * 12 11 10 14 14 C 1.55157 * 111.00648 * 185.00357 * 12 11 10 15 15 C 1.54319 * 102.94588 * 153.57592 * 14 12 11 16 16 N 1.47019 * 107.27181 * 337.81199 * 15 14 12 17 17 C 1.36938 * 125.64891 * 178.95981 * 16 15 14 18 18 H 1.08001 * 119.99951 * 174.78583 * 17 16 15 19 19 C 1.38808 * 120.00241 * 354.79518 * 17 16 15 20 20 N 1.31628 * 119.99758 * 7.05179 * 19 17 16 21 21 Si 1.86797 * 120.00327 * 187.05627 * 19 17 16 22 22 H 1.48494 * 109.47443 * 94.98380 * 21 19 17 23 23 H 1.48503 * 109.47302 * 214.98552 * 21 19 17 24 24 H 1.48503 * 109.46995 * 334.98332 * 21 19 17 25 25 C 1.47421 * 108.70238 * 358.93403 * 16 15 14 26 26 C 1.54625 * 101.76273 * 25.41733 * 6 5 4 27 27 C 1.34420 * 124.34583 * 270.02583 * 4 3 2 28 28 O 1.21276 * 124.94863 * 0.41779 * 27 4 3 29 29 H 1.08997 * 109.47351 * 59.99511 * 1 2 3 30 30 H 1.08998 * 109.47648 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47189 * 300.00203 * 1 2 3 32 32 H 1.08999 * 109.47134 * 240.00151 * 2 1 3 33 33 H 1.09007 * 109.47360 * 119.99689 * 2 1 3 34 34 H 1.09006 * 109.47039 * 59.99705 * 3 2 1 35 35 H 1.08997 * 109.47191 * 300.00587 * 3 2 1 36 36 H 1.08999 * 110.24232 * 44.00540 * 5 4 3 37 37 H 1.08995 * 110.31889 * 282.04358 * 5 4 3 38 38 H 0.97000 * 120.00240 * 0.02562 * 10 8 6 39 39 H 1.08993 * 109.47096 * 300.00372 * 11 10 8 40 40 H 1.09002 * 109.46946 * 60.00498 * 11 10 8 41 41 H 0.96701 * 114.00063 * 300.70110 * 13 12 11 42 42 H 1.09009 * 110.71878 * 271.94390 * 14 12 11 43 43 H 1.08997 * 110.71837 * 35.03276 * 14 12 11 44 44 H 1.09010 * 109.87895 * 97.22309 * 15 14 12 45 45 H 1.08998 * 109.88694 * 218.23568 * 15 14 12 46 46 H 0.96996 * 120.00035 * 180.02562 * 20 19 17 47 47 H 1.08994 * 110.37131 * 265.29290 * 25 16 15 48 48 H 1.09001 * 110.36442 * 142.97117 * 25 16 15 49 49 H 1.08994 * 110.48511 * 93.88117 * 26 6 5 50 50 H 1.09002 * 110.48319 * 216.51969 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3326 1.4426 -1.2126 6 6 5.7408 1.8777 -0.7500 7 1 5.8670 2.9562 -0.8457 8 6 6.8109 1.1417 -1.5144 9 8 6.5019 0.3318 -2.3626 10 7 8.1113 1.3835 -1.2553 11 6 9.1515 0.6675 -1.9980 12 6 10.5293 1.1245 -1.5146 13 8 10.7041 0.8348 -0.1263 14 6 11.6579 0.4816 -2.3633 15 6 12.8091 1.5015 -2.2371 16 7 12.2092 2.7946 -1.8770 17 6 12.8958 3.9577 -1.6513 18 1 12.3573 4.8769 -1.4741 19 6 14.2839 3.9554 -1.6506 20 7 14.9403 2.8701 -2.0026 21 14 15.2203 5.4922 -1.1500 22 1 15.5722 5.4103 0.2903 23 1 16.4618 5.6005 -1.9576 24 1 14.3712 6.6877 -1.3849 25 6 10.7461 2.6317 -1.7997 26 6 5.7300 1.4516 0.7363 27 6 4.2638 1.4418 1.1089 28 8 3.8355 1.4339 2.2435 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9378 2.1532 -1.9387 37 1 4.3699 0.4431 -1.6456 38 1 8.3584 2.0309 -0.5766 39 1 9.0446 -0.4042 -1.8312 40 1 9.0508 0.8815 -3.0620 41 1 10.0505 1.2558 0.4487 42 1 11.9502 -0.4833 -1.9487 43 1 11.3459 0.3748 -3.4022 44 1 13.5016 1.1842 -1.4572 45 1 13.3353 1.5863 -3.1878 46 1 15.9103 2.8683 -2.0017 47 1 10.2829 2.9091 -2.7466 48 1 10.3398 3.2338 -0.9870 49 1 6.1594 0.4564 0.8509 50 1 6.2734 2.1748 1.3445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278811331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:37 Heat of formation + Delta-G solvation = -95.900183 kcal Electronic energy + Delta-G solvation = -29977.904193 eV Core-core repulsion = 25812.668958 eV Total energy + Delta-G solvation = -4165.235235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.19755 -39.74651 -38.51582 -36.70639 -35.22488 -35.16560 -34.27960 -32.25024 -31.86290 -29.69025 -28.45627 -28.02475 -26.76418 -25.72445 -24.09361 -22.89327 -22.17782 -20.78853 -20.16464 -19.90979 -19.72756 -18.14108 -17.23078 -16.94942 -16.69423 -16.14822 -15.93545 -15.48099 -15.22295 -14.98793 -14.72220 -14.48666 -14.20410 -14.15685 -13.93011 -13.81678 -13.58268 -13.30387 -13.10111 -12.93951 -12.57528 -12.38552 -12.22928 -11.98671 -11.92054 -11.81457 -11.76733 -11.68390 -11.13199 -11.03120 -10.92981 -10.78429 -10.49665 -10.35739 -10.16540 -10.14015 -9.90554 -9.79859 -9.49080 -9.25716 -9.08370 -8.60403 -6.87534 -5.76798 -3.09363 2.21799 2.31698 2.51426 2.92629 3.37425 3.42318 3.44690 3.81965 3.92943 4.32098 4.42713 4.44079 4.44829 4.53559 4.56911 4.71964 4.83295 4.84600 4.98781 5.05990 5.07110 5.16116 5.18656 5.31377 5.31946 5.34921 5.47011 5.50219 5.58617 5.60827 5.67759 5.75034 5.81792 5.88180 6.11132 6.15123 6.17032 6.30214 6.38191 6.48973 6.53878 6.71017 7.20667 7.48038 7.61051 7.79433 7.80099 7.89917 7.95257 8.21065 9.16285 9.76822 10.41949 11.35283 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.002075 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.614045 B =13490.900406 C =14044.244757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.126 3.874 4 N -0.620 5.620 5 C 0.117 3.883 6 C -0.126 4.126 7 H 0.120 0.880 8 C 0.527 3.473 9 O -0.535 6.535 10 N -0.720 5.720 11 C 0.103 3.897 12 C 0.101 3.899 13 O -0.535 6.535 14 C -0.128 4.128 15 C 0.180 3.820 16 N -0.598 5.598 17 C -0.233 4.233 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.917 5.917 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.117 3.883 26 C -0.146 4.146 27 C 0.521 3.479 28 O -0.529 6.529 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.401 0.599 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.363 0.637 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.042 0.958 46 H 0.253 0.747 47 H 0.026 0.974 48 H 0.038 0.962 49 H 0.111 0.889 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.604 -4.216 1.470 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.354 5.354 5 C -0.006 4.006 6 C -0.147 4.147 7 H 0.138 0.862 8 C 0.312 3.688 9 O -0.412 6.412 10 N -0.372 5.372 11 C -0.021 4.021 12 C 0.059 3.941 13 O -0.339 6.339 14 C -0.166 4.166 15 C 0.056 3.944 16 N -0.324 5.324 17 C -0.361 4.361 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.010 4.010 26 C -0.186 4.186 27 C 0.308 3.692 28 O -0.405 6.405 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.236 0.764 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.209 0.791 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.043 0.957 48 H 0.056 0.944 49 H 0.129 0.871 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -24.363 -5.079 1.205 24.916 hybrid contribution 0.281 1.471 0.652 1.633 sum -24.082 -3.608 1.857 24.421 Atomic orbital electron populations 1.21689 0.94885 1.02161 1.01973 1.21927 0.96360 0.97028 1.02873 1.21470 0.77490 0.97282 1.03287 1.48340 1.06392 1.73432 1.07204 1.21990 0.87742 1.03970 0.86922 1.22259 0.94550 1.02600 0.95338 0.86165 1.19988 0.83209 0.82538 0.83103 1.90725 1.82030 1.34940 1.33465 1.45956 1.05630 1.44190 1.41430 1.22092 0.86094 0.96986 0.96889 1.22726 0.92106 0.96822 0.82452 1.86665 1.56904 1.74383 1.15978 1.22902 0.95975 1.00394 0.97368 1.21144 0.90861 0.82397 1.00036 1.44326 0.99025 1.07235 1.81794 1.19010 0.88772 0.86059 1.42260 0.90491 1.24831 0.96312 0.97557 1.01461 1.69971 1.06734 1.27056 1.52609 0.86121 0.79532 0.81997 0.78218 1.21569 1.21733 1.20664 1.22133 0.88440 0.92323 0.98066 1.22364 0.95734 1.05649 0.94859 1.20743 0.88874 0.75134 0.84432 1.90742 1.78506 1.50241 1.21009 0.92502 0.92314 0.92469 0.91519 0.91524 0.89893 0.90177 0.89636 0.88900 0.76435 0.90613 0.90192 0.79136 0.90932 0.90907 0.92970 0.93942 0.93658 0.95678 0.94360 0.87123 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.15 0.37 -0.43 16 2 C -0.14 -0.98 6.26 -26.74 -0.17 -1.15 16 3 C 0.13 0.88 5.93 -4.04 -0.02 0.85 16 4 N -0.62 -5.13 2.93 -172.42 -0.51 -5.63 16 5 C 0.12 0.84 6.71 -3.12 -0.02 0.82 16 6 C -0.13 -0.87 3.54 -90.14 -0.32 -1.19 16 7 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 8 C 0.53 5.24 7.06 -10.98 -0.08 5.16 16 9 O -0.53 -7.22 15.50 5.56 0.09 -7.14 16 10 N -0.72 -7.00 5.18 -60.30 -0.31 -7.32 16 11 C 0.10 1.29 4.88 -4.04 -0.02 1.27 16 12 C 0.10 1.58 0.95 -88.47 -0.08 1.50 16 13 O -0.54 -8.57 13.19 -35.23 -0.46 -9.03 16 14 C -0.13 -2.28 6.16 -24.90 -0.15 -2.43 16 15 C 0.18 4.28 5.38 -3.07 -0.02 4.26 16 16 N -0.60 -14.64 3.39 -170.08 -0.58 -15.22 16 17 C -0.23 -6.32 10.27 -15.06 -0.15 -6.48 16 18 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 19 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 20 N -0.92 -26.64 10.36 55.49 0.57 -26.07 16 21 Si 0.91 21.75 29.56 -169.99 -5.02 16.73 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.12 2.17 5.98 -2.53 -0.02 2.16 16 26 C -0.15 -1.07 6.41 -26.74 -0.17 -1.24 16 27 C 0.52 5.34 8.02 -10.86 -0.09 5.26 16 28 O -0.53 -7.47 17.60 5.56 0.10 -7.37 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 34 H 0.08 0.64 7.93 -51.93 -0.41 0.23 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.80 6.96 -51.93 -0.36 0.44 16 38 H 0.40 3.12 7.31 -40.82 -0.30 2.82 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.05 8.13 -51.93 -0.42 0.62 16 41 H 0.36 4.21 8.07 45.56 0.37 4.57 16 42 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 43 H 0.07 1.16 8.03 -51.93 -0.42 0.74 16 44 H 0.05 1.41 7.30 -51.92 -0.38 1.03 16 45 H 0.04 1.11 7.61 -51.93 -0.40 0.71 16 46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.03 0.47 8.04 -51.93 -0.42 0.05 16 48 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16 49 H 0.11 0.83 7.89 -51.93 -0.41 0.42 16 50 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 402.96 15.07 6.07 6.07 Total: -1.00 -35.34 402.96 -8.85 -44.18 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.76 Total: 2.66 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.04 Total: 8.13 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.82 Total: -54.23 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.28 Total: -23.54 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.34 -8.85 -44.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278811331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.716 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds