Wall clock time and date at job start Wed Apr 1 2020 00:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47553 * 2 1 4 4 N 1.46496 * 109.47553 * 180.02562 * 3 2 1 5 5 C 1.46759 * 124.35127 * 89.99962 * 4 3 2 6 6 C 1.54484 * 105.47316 * 163.00526 * 5 4 3 7 7 H 1.09001 * 110.96893 * 267.29623 * 6 5 4 8 8 C 1.50704 * 110.96594 * 143.53651 * 6 5 4 9 9 O 1.21276 * 120.00013 * 359.97438 * 8 6 5 10 10 N 1.34778 * 119.99636 * 179.97438 * 8 6 5 11 11 C 1.46500 * 119.99782 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46963 * 179.97438 * 11 10 8 13 13 O 1.42901 * 110.88577 * 61.12300 * 12 11 10 14 14 C 1.55157 * 111.00648 * 185.00357 * 12 11 10 15 15 C 1.54319 * 102.94588 * 153.57592 * 14 12 11 16 16 N 1.47019 * 107.27181 * 337.81199 * 15 14 12 17 17 C 1.36938 * 125.64891 * 178.95981 * 16 15 14 18 18 H 1.08001 * 119.99951 * 174.78583 * 17 16 15 19 19 C 1.38808 * 120.00241 * 354.79518 * 17 16 15 20 20 N 1.31628 * 119.99758 * 7.05179 * 19 17 16 21 21 Si 1.86797 * 120.00327 * 187.05627 * 19 17 16 22 22 H 1.48494 * 109.47443 * 94.98380 * 21 19 17 23 23 H 1.48503 * 109.47302 * 214.98552 * 21 19 17 24 24 H 1.48503 * 109.46995 * 334.98332 * 21 19 17 25 25 C 1.47421 * 108.70238 * 358.93403 * 16 15 14 26 26 C 1.54625 * 101.76273 * 25.41733 * 6 5 4 27 27 C 1.34420 * 124.34583 * 270.02583 * 4 3 2 28 28 O 1.21276 * 124.94863 * 0.41779 * 27 4 3 29 29 H 1.08997 * 109.47351 * 59.99511 * 1 2 3 30 30 H 1.08998 * 109.47648 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47189 * 300.00203 * 1 2 3 32 32 H 1.08999 * 109.47134 * 240.00151 * 2 1 3 33 33 H 1.09007 * 109.47360 * 119.99689 * 2 1 3 34 34 H 1.09006 * 109.47039 * 59.99705 * 3 2 1 35 35 H 1.08997 * 109.47191 * 300.00587 * 3 2 1 36 36 H 1.08999 * 110.24232 * 44.00540 * 5 4 3 37 37 H 1.08995 * 110.31889 * 282.04358 * 5 4 3 38 38 H 0.97000 * 120.00240 * 0.02562 * 10 8 6 39 39 H 1.08993 * 109.47096 * 300.00372 * 11 10 8 40 40 H 1.09002 * 109.46946 * 60.00498 * 11 10 8 41 41 H 0.96701 * 114.00063 * 300.70110 * 13 12 11 42 42 H 1.09009 * 110.71878 * 271.94390 * 14 12 11 43 43 H 1.08997 * 110.71837 * 35.03276 * 14 12 11 44 44 H 1.09010 * 109.87895 * 97.22309 * 15 14 12 45 45 H 1.08998 * 109.88694 * 218.23568 * 15 14 12 46 46 H 0.96996 * 120.00035 * 180.02562 * 20 19 17 47 47 H 1.08994 * 110.37131 * 265.29290 * 25 16 15 48 48 H 1.09001 * 110.36442 * 142.97117 * 25 16 15 49 49 H 1.08994 * 110.48511 * 93.88117 * 26 6 5 50 50 H 1.09002 * 110.48319 * 216.51969 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3326 1.4426 -1.2126 6 6 5.7408 1.8777 -0.7500 7 1 5.8670 2.9562 -0.8457 8 6 6.8109 1.1417 -1.5144 9 8 6.5019 0.3318 -2.3626 10 7 8.1113 1.3835 -1.2553 11 6 9.1515 0.6675 -1.9980 12 6 10.5293 1.1245 -1.5146 13 8 10.7041 0.8348 -0.1263 14 6 11.6579 0.4816 -2.3633 15 6 12.8091 1.5015 -2.2371 16 7 12.2092 2.7946 -1.8770 17 6 12.8958 3.9577 -1.6513 18 1 12.3573 4.8769 -1.4741 19 6 14.2839 3.9554 -1.6506 20 7 14.9403 2.8701 -2.0026 21 14 15.2203 5.4922 -1.1500 22 1 15.5722 5.4103 0.2903 23 1 16.4618 5.6005 -1.9576 24 1 14.3712 6.6877 -1.3849 25 6 10.7461 2.6317 -1.7997 26 6 5.7300 1.4516 0.7363 27 6 4.2638 1.4418 1.1089 28 8 3.8355 1.4339 2.2435 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9378 2.1532 -1.9387 37 1 4.3699 0.4431 -1.6456 38 1 8.3584 2.0309 -0.5766 39 1 9.0446 -0.4042 -1.8312 40 1 9.0508 0.8815 -3.0620 41 1 10.0505 1.2558 0.4487 42 1 11.9502 -0.4833 -1.9487 43 1 11.3459 0.3748 -3.4022 44 1 13.5016 1.1842 -1.4572 45 1 13.3353 1.5863 -3.1878 46 1 15.9103 2.8683 -2.0017 47 1 10.2829 2.9091 -2.7466 48 1 10.3398 3.2338 -0.9870 49 1 6.1594 0.4564 0.8509 50 1 6.2734 2.1748 1.3445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278811331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:36 Heat of formation + Delta-G solvation = -123.046278 kcal Electronic energy + Delta-G solvation = -29979.081336 eV Core-core repulsion = 25812.668958 eV Total energy + Delta-G solvation = -4166.412378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.92578 -40.73537 -39.74693 -37.50870 -36.73860 -35.77335 -35.29249 -33.99520 -32.58082 -31.33597 -29.77212 -28.74937 -27.65383 -27.05725 -25.46796 -23.83356 -22.73526 -22.20999 -21.38908 -21.12870 -20.45133 -19.03838 -18.73273 -17.98408 -17.67450 -17.00160 -16.75551 -16.69105 -16.36327 -16.16363 -15.81626 -15.58603 -15.54005 -15.09714 -14.83143 -14.81081 -14.57165 -14.23010 -14.16338 -13.87593 -13.76597 -13.54157 -13.21148 -13.08260 -12.90077 -12.77284 -12.75728 -12.52267 -12.41486 -12.32477 -12.20582 -12.05969 -11.98200 -11.79149 -11.69492 -11.66049 -11.17214 -10.90252 -10.74931 -10.64305 -10.14761 -9.76055 -8.85751 -7.84487 -5.17988 1.46228 1.47013 1.49087 1.54933 1.57388 1.84434 2.16829 2.50475 3.17198 3.21786 3.33330 3.35124 3.52562 3.65697 3.77972 3.87206 3.97588 3.99601 4.01419 4.03416 4.18610 4.32747 4.50333 4.52905 4.54182 4.62142 4.63425 4.66841 4.72699 4.79599 4.86134 4.87290 4.95113 4.97653 5.01241 5.12847 5.13550 5.16154 5.31757 5.33736 5.47043 5.55263 5.66409 5.79095 6.04156 6.21200 6.45229 6.87999 7.06534 7.11168 7.16646 7.79500 8.43515 9.26745 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.002075 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.614045 B =13490.900406 C =14044.244757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.615 5.615 5 C 0.116 3.884 6 C -0.111 4.111 7 H 0.151 0.849 8 C 0.532 3.468 9 O -0.570 6.570 10 N -0.712 5.712 11 C 0.120 3.880 12 C 0.122 3.878 13 O -0.554 6.554 14 C -0.121 4.121 15 C 0.188 3.812 16 N -0.621 5.621 17 C -0.239 4.239 18 H 0.087 0.913 19 C -0.069 4.069 20 N -0.951 5.951 21 Si 0.976 3.024 22 H -0.290 1.290 23 H -0.298 1.298 24 H -0.264 1.264 25 C 0.112 3.888 26 C -0.139 4.139 27 C 0.511 3.489 28 O -0.577 6.577 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.413 0.587 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.383 0.617 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.007 0.993 45 H 0.006 0.994 46 H 0.245 0.755 47 H 0.036 0.964 48 H 0.058 0.942 49 H 0.110 0.890 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.797 -3.010 1.246 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.000 4.000 4 N -0.348 5.348 5 C -0.007 4.007 6 C -0.133 4.133 7 H 0.168 0.832 8 C 0.318 3.682 9 O -0.449 6.449 10 N -0.365 5.365 11 C -0.005 4.005 12 C 0.079 3.921 13 O -0.361 6.361 14 C -0.160 4.160 15 C 0.062 3.938 16 N -0.347 5.347 17 C -0.368 4.368 18 H 0.105 0.895 19 C -0.262 4.262 20 N -0.600 5.600 21 Si 0.805 3.195 22 H -0.217 1.217 23 H -0.225 1.225 24 H -0.188 1.188 25 C -0.013 4.013 26 C -0.179 4.179 27 C 0.300 3.700 28 O -0.457 6.457 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.250 0.750 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.232 0.768 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.076 0.924 49 H 0.128 0.872 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.617 -3.846 0.978 26.911 hybrid contribution 0.891 1.071 0.700 1.559 sum -25.726 -2.775 1.678 25.930 Atomic orbital electron populations 1.21669 0.93585 1.02485 1.02627 1.21871 0.97497 0.96790 1.01620 1.21619 0.76950 0.97382 1.04064 1.48479 1.07006 1.72114 1.07176 1.22069 0.87937 1.03967 0.86684 1.22227 0.93097 1.03778 0.94191 0.83157 1.20364 0.83384 0.81882 0.82560 1.90727 1.82498 1.36486 1.35174 1.45816 1.05155 1.44145 1.41371 1.21729 0.84668 0.97180 0.96937 1.22404 0.93009 0.94334 0.82315 1.86633 1.58353 1.74760 1.16355 1.22780 0.94761 0.98895 0.99568 1.20832 0.92350 0.84099 0.96478 1.44621 1.01764 1.06606 1.81701 1.19463 0.89292 0.87461 1.40583 0.89506 1.25681 0.97534 1.00484 1.02464 1.70205 1.06236 1.29112 1.54420 0.85092 0.77947 0.79265 0.77237 1.21721 1.22513 1.18844 1.22388 0.85015 0.94752 0.99159 1.22363 0.93881 1.06306 0.95353 1.21248 0.90261 0.74437 0.84094 1.90715 1.79499 1.52625 1.22852 0.91032 0.92195 0.92599 0.91431 0.94030 0.90946 0.87498 0.87303 0.90281 0.74979 0.90485 0.90219 0.76755 0.90215 0.88644 0.97466 0.97626 0.94557 0.94591 0.92389 0.87233 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.66 16 2 C -0.14 -1.81 6.26 30.59 0.19 -1.62 16 3 C 0.12 1.51 5.93 86.38 0.51 2.02 16 4 N -0.62 -9.08 2.93 -818.00 -2.40 -11.48 16 5 C 0.12 1.35 6.71 86.83 0.58 1.93 16 6 C -0.11 -1.15 3.54 -10.48 -0.04 -1.18 16 7 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 8 C 0.53 8.81 7.06 87.66 0.62 9.42 16 9 O -0.57 -13.95 15.50 -3.02 -0.05 -14.00 16 10 N -0.71 -11.22 5.18 -463.07 -2.40 -13.62 16 11 C 0.12 2.61 4.88 86.38 0.42 3.03 16 12 C 0.12 3.51 0.95 -9.40 -0.01 3.50 16 13 O -0.55 -16.42 13.19 -148.98 -1.96 -18.39 16 14 C -0.12 -4.23 6.16 31.78 0.20 -4.03 16 15 C 0.19 9.16 5.38 86.73 0.47 9.62 16 16 N -0.62 -30.27 3.39 -692.01 -2.35 -32.62 16 17 C -0.24 -12.93 10.27 84.03 0.86 -12.06 16 18 H 0.09 4.40 7.84 -2.91 -0.02 4.38 16 19 C -0.07 -3.87 5.48 84.86 0.46 -3.40 16 20 N -0.95 -57.35 10.36 21.65 0.22 -57.13 16 21 Si 0.98 45.15 29.56 68.60 2.03 47.17 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 25 C 0.11 3.88 5.98 86.86 0.52 4.40 16 26 C -0.14 -1.67 6.41 30.59 0.20 -1.47 16 27 C 0.51 9.84 8.02 87.90 0.71 10.55 16 28 O -0.58 -16.29 17.60 -3.02 -0.05 -16.34 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.07 1.08 7.93 -2.38 -0.02 1.06 16 35 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 1.20 6.96 -2.39 -0.02 1.19 16 38 H 0.41 4.63 7.31 -92.71 -0.68 3.96 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 1.82 8.13 -2.39 -0.02 1.80 16 41 H 0.38 7.62 8.07 -74.06 -0.60 7.02 16 42 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 43 H 0.10 2.88 8.03 -2.39 -0.02 2.86 16 44 H 0.01 0.40 7.30 -2.38 -0.02 0.38 16 45 H 0.01 0.30 7.61 -2.39 -0.02 0.29 16 46 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 47 H 0.04 1.21 8.04 -2.39 -0.02 1.19 16 48 H 0.06 1.78 8.02 -2.39 -0.02 1.77 16 49 H 0.11 1.39 7.89 -2.39 -0.02 1.37 16 50 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -80.35 402.96 -0.88 -81.23 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -0.33 Total: 15.13 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 6.40 Total: 20.04 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -6.92 Total: -114.85 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -2.06 Total: -48.73 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -80.35 -0.88 -81.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278811331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.814 kcal (2) G-P(sol) polarization free energy of solvation -80.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds