Wall clock time and date at job start Wed Apr 1 2020 00:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46761 * 124.34377 * 269.72042 * 4 3 2 6 6 C 1.54663 * 105.37969 * 162.85968 * 5 4 3 7 7 H 1.09000 * 111.22503 * 267.57925 * 6 5 4 8 8 C 1.50697 * 110.82440 * 143.77602 * 6 5 4 9 9 O 1.21286 * 120.00100 * 6.34956 * 8 6 5 10 10 N 1.34777 * 120.00010 * 186.34935 * 8 6 5 11 11 C 1.46498 * 119.99740 * 179.97438 * 10 8 6 12 12 C 1.53009 * 109.47006 * 179.97438 * 11 10 8 13 13 O 1.42894 * 110.88582 * 297.57439 * 12 11 10 14 14 C 1.55164 * 111.00237 * 173.65077 * 12 11 10 15 15 C 1.54327 * 102.93871 * 206.42366 * 14 12 11 16 16 N 1.47020 * 107.27145 * 22.19475 * 15 14 12 17 17 C 1.36942 * 125.64875 * 181.02314 * 16 15 14 18 18 H 1.08002 * 119.99952 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99841 * 0.03844 * 17 16 15 20 20 N 1.31622 * 119.99762 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99875 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47182 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46712 * 120.00022 * 21 19 17 24 24 H 1.48496 * 109.47259 * 240.00076 * 21 19 17 25 25 C 1.47425 * 108.70551 * 1.05657 * 16 15 14 26 26 C 1.54632 * 101.68369 * 25.76659 * 6 5 4 27 27 C 1.34417 * 124.35281 * 90.02637 * 4 3 2 28 28 O 1.21287 * 124.94010 * 0.37856 * 27 4 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.09003 * 110.24870 * 281.98092 * 5 4 3 37 37 H 1.08997 * 110.25292 * 43.99096 * 5 4 3 38 38 H 0.96998 * 120.00521 * 0.02562 * 10 8 6 39 39 H 1.09001 * 109.47427 * 299.99632 * 11 10 8 40 40 H 1.08998 * 109.47540 * 60.00099 * 11 10 8 41 41 H 0.96698 * 114.00363 * 59.29384 * 13 12 11 42 42 H 1.08997 * 110.71807 * 324.78769 * 14 12 11 43 43 H 1.08997 * 110.71785 * 88.06119 * 14 12 11 44 44 H 1.09001 * 109.88322 * 262.77814 * 15 14 12 45 45 H 1.09003 * 110.00870 * 141.68263 * 15 14 12 46 46 H 0.97000 * 119.99478 * 179.97438 * 20 19 17 47 47 H 1.09001 * 110.37082 * 217.03272 * 25 16 15 48 48 H 1.09005 * 110.36898 * 94.70872 * 25 16 15 49 49 H 1.08999 * 110.48303 * 216.31009 * 26 6 5 50 50 H 1.08996 * 110.48602 * 93.67183 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3335 1.4482 1.2108 6 6 5.7413 1.0064 0.7470 7 1 5.8679 -0.0720 0.8424 8 6 6.8122 1.7420 1.5106 9 8 6.5089 2.4670 2.4344 10 7 8.1070 1.5942 1.1669 11 6 9.1480 2.3097 1.9089 12 6 10.5190 1.9689 1.3211 13 8 10.7993 0.5744 1.4575 14 6 11.6336 2.8277 1.9752 15 6 12.7179 2.8800 0.8783 16 7 12.0546 2.6057 -0.4047 17 6 12.6726 2.5413 -1.6250 18 1 12.0942 2.3331 -2.5130 19 6 14.0426 2.7435 -1.7207 20 7 14.7476 2.9965 -0.6383 21 14 14.8858 2.6550 -3.3852 22 1 13.8785 2.3585 -4.4353 23 1 15.5383 3.9562 -3.6792 24 1 15.9108 1.5807 -3.3644 25 6 10.6137 2.4121 -0.1602 26 6 5.7295 1.4329 -0.7393 27 6 4.2631 1.4431 -1.1107 28 8 3.8337 1.4504 -2.2450 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 4.3713 2.4506 1.6373 37 1 3.9392 0.7414 1.9409 38 1 8.3496 1.0147 0.4279 39 1 8.9762 3.3834 1.8322 40 1 9.1180 2.0109 2.9567 41 1 10.1556 -0.0007 1.0216 42 1 11.2661 3.8284 2.2022 43 1 12.0165 2.3433 2.8733 44 1 13.4779 2.1230 1.0720 45 1 13.1769 3.8684 0.8545 46 1 15.7050 3.1373 -0.7052 47 1 10.2188 1.6350 -0.8146 48 1 10.0742 3.3471 -0.3116 49 1 6.2721 0.7096 -1.3479 50 1 6.1592 2.4280 -0.8541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278811332.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:41 Heat of formation + Delta-G solvation = -95.809350 kcal Electronic energy + Delta-G solvation = -30077.187615 eV Core-core repulsion = 25911.956319 eV Total energy + Delta-G solvation = -4165.231296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.17975 -39.73704 -38.51121 -36.68767 -35.21100 -35.16168 -34.29176 -32.24449 -31.85928 -29.67574 -28.43629 -27.99858 -26.76157 -25.71230 -24.08180 -22.89868 -22.19508 -20.76398 -20.15863 -19.86530 -19.74706 -18.06460 -17.32038 -16.96256 -16.60834 -16.19645 -15.92637 -15.49544 -15.21211 -14.95740 -14.72090 -14.42529 -14.12864 -14.09354 -14.03683 -13.85137 -13.61791 -13.20874 -13.14948 -12.90258 -12.55981 -12.33519 -12.27078 -11.97194 -11.91911 -11.82598 -11.75920 -11.68132 -11.15540 -11.02661 -10.92408 -10.78220 -10.49014 -10.35491 -10.14280 -10.11329 -9.88471 -9.77661 -9.48798 -9.25711 -9.06944 -8.62281 -6.86834 -5.74581 -3.08371 2.24565 2.33313 2.52194 2.93723 3.38084 3.43398 3.45987 3.81993 3.94347 4.33842 4.42519 4.44594 4.45097 4.52276 4.56545 4.72743 4.81836 4.85030 4.98423 5.07213 5.09429 5.16622 5.20839 5.30747 5.33814 5.36322 5.47472 5.50977 5.58522 5.60089 5.66573 5.75575 5.79698 5.88480 6.11821 6.16563 6.17427 6.30592 6.38130 6.49051 6.54758 6.73162 7.20916 7.50598 7.60388 7.80595 7.82917 7.90175 7.94988 8.22067 9.17691 9.77831 10.42354 11.37117 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.002271 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.629987 B =12327.841639 C =13528.731604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.125 3.875 4 N -0.621 5.621 5 C 0.119 3.881 6 C -0.124 4.124 7 H 0.121 0.879 8 C 0.526 3.474 9 O -0.535 6.535 10 N -0.721 5.721 11 C 0.103 3.897 12 C 0.101 3.899 13 O -0.536 6.536 14 C -0.128 4.128 15 C 0.181 3.819 16 N -0.598 5.598 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.117 3.883 26 C -0.148 4.148 27 C 0.521 3.479 28 O -0.528 6.528 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.401 0.599 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.363 0.637 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.252 0.748 47 H 0.038 0.962 48 H 0.026 0.974 49 H 0.113 0.887 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.072 -5.881 6.444 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C 0.004 3.996 4 N -0.355 5.355 5 C -0.004 4.004 6 C -0.146 4.146 7 H 0.139 0.861 8 C 0.311 3.689 9 O -0.412 6.412 10 N -0.372 5.372 11 C -0.021 4.021 12 C 0.059 3.941 13 O -0.340 6.340 14 C -0.166 4.166 15 C 0.056 3.944 16 N -0.324 5.324 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.010 4.010 26 C -0.189 4.189 27 C 0.308 3.692 28 O -0.404 6.404 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.236 0.764 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.209 0.791 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.044 0.956 49 H 0.132 0.868 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.833 -5.072 6.766 25.289 hybrid contribution 0.225 -0.577 -1.436 1.564 sum -23.608 -5.650 5.329 24.852 Atomic orbital electron populations 1.21694 0.94891 1.02133 1.02049 1.21916 0.96369 0.97011 1.02718 1.21467 0.77563 0.97214 1.03399 1.48348 1.06362 1.73582 1.07202 1.21998 0.87694 1.03782 0.86946 1.22289 0.94525 1.02475 0.95334 0.86137 1.20012 0.83181 0.81744 0.83929 1.90730 1.82008 1.38679 1.29777 1.45969 1.06094 1.48958 1.36225 1.22096 0.86091 0.97574 0.96306 1.22733 0.91987 0.82438 0.96963 1.86657 1.53896 1.15352 1.78069 1.22907 0.96238 0.97248 1.00246 1.21149 0.91146 1.00578 0.81529 1.44344 1.00538 1.83488 1.04030 1.19067 0.90715 1.42029 0.84028 0.90433 1.24814 0.96303 1.01830 0.97420 1.69971 1.06218 1.54450 1.26019 0.86037 0.79468 0.77268 0.82915 1.20508 1.21738 1.21719 1.22133 0.88918 0.97610 0.92337 1.22397 0.95719 1.05857 0.94884 1.20751 0.88877 0.75118 0.84428 1.90749 1.78452 1.50115 1.21047 0.92325 0.92416 0.92501 0.91669 0.91494 0.89880 0.90150 0.88992 0.89698 0.76426 0.90213 0.90572 0.79134 0.90893 0.90915 0.93119 0.93725 0.93736 0.94388 0.95616 0.86823 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.14 -0.90 6.26 -26.73 -0.17 -1.06 16 3 C 0.13 0.89 5.94 -4.04 -0.02 0.87 16 4 N -0.62 -5.26 2.93 -172.30 -0.51 -5.76 16 5 C 0.12 0.86 6.65 -3.03 -0.02 0.84 16 6 C -0.12 -0.87 3.56 -90.04 -0.32 -1.19 16 7 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 8 C 0.53 5.24 7.07 -10.99 -0.08 5.16 16 9 O -0.54 -7.23 15.57 5.55 0.09 -7.14 16 10 N -0.72 -7.03 5.12 -60.29 -0.31 -7.34 16 11 C 0.10 1.29 4.90 -4.04 -0.02 1.27 16 12 C 0.10 1.58 0.95 -88.46 -0.08 1.50 16 13 O -0.54 -8.53 13.19 -35.23 -0.46 -8.99 16 14 C -0.13 -2.28 6.16 -24.89 -0.15 -2.44 16 15 C 0.18 4.30 5.38 -3.06 -0.02 4.29 16 16 N -0.60 -14.72 3.39 -170.07 -0.58 -15.30 16 17 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -26.82 10.31 55.49 0.57 -26.25 16 21 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.12 2.18 5.92 -2.53 -0.01 2.16 16 26 C -0.15 -1.18 6.37 -26.74 -0.17 -1.35 16 27 C 0.52 5.57 8.02 -10.86 -0.09 5.49 16 28 O -0.53 -7.75 17.59 5.55 0.10 -7.65 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.68 7.92 -51.93 -0.41 0.27 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.79 7.07 -51.93 -0.37 0.43 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.40 3.16 7.30 -40.82 -0.30 2.86 16 39 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.36 4.17 8.16 45.56 0.37 4.54 16 42 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 1.37 7.38 -51.93 -0.38 0.99 16 45 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 48 H 0.03 0.48 8.04 -51.93 -0.42 0.07 16 49 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.11 0.95 7.89 -51.93 -0.41 0.54 16 LS Contribution 402.86 15.07 6.07 6.07 Total: -1.00 -35.52 402.86 -8.84 -44.36 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.75 Total: 2.68 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.04 Total: 8.42 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.82 Total: -54.65 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.28 Total: -23.79 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.52 -8.84 -44.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278811332.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.446 kcal (2) G-P(sol) polarization free energy of solvation -35.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds