Wall clock time and date at job start Wed Apr 1 2020 00:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46761 * 124.34377 * 269.72042 * 4 3 2 6 6 C 1.54663 * 105.37969 * 162.85968 * 5 4 3 7 7 H 1.09000 * 111.22503 * 267.57925 * 6 5 4 8 8 C 1.50697 * 110.82440 * 143.77602 * 6 5 4 9 9 O 1.21286 * 120.00100 * 6.34956 * 8 6 5 10 10 N 1.34777 * 120.00010 * 186.34935 * 8 6 5 11 11 C 1.46498 * 119.99740 * 179.97438 * 10 8 6 12 12 C 1.53009 * 109.47006 * 179.97438 * 11 10 8 13 13 O 1.42894 * 110.88582 * 297.57439 * 12 11 10 14 14 C 1.55164 * 111.00237 * 173.65077 * 12 11 10 15 15 C 1.54327 * 102.93871 * 206.42366 * 14 12 11 16 16 N 1.47020 * 107.27145 * 22.19475 * 15 14 12 17 17 C 1.36942 * 125.64875 * 181.02314 * 16 15 14 18 18 H 1.08002 * 119.99952 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99841 * 0.03844 * 17 16 15 20 20 N 1.31622 * 119.99762 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99875 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47182 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46712 * 120.00022 * 21 19 17 24 24 H 1.48496 * 109.47259 * 240.00076 * 21 19 17 25 25 C 1.47425 * 108.70551 * 1.05657 * 16 15 14 26 26 C 1.54632 * 101.68369 * 25.76659 * 6 5 4 27 27 C 1.34417 * 124.35281 * 90.02637 * 4 3 2 28 28 O 1.21287 * 124.94010 * 0.37856 * 27 4 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.09003 * 110.24870 * 281.98092 * 5 4 3 37 37 H 1.08997 * 110.25292 * 43.99096 * 5 4 3 38 38 H 0.96998 * 120.00521 * 0.02562 * 10 8 6 39 39 H 1.09001 * 109.47427 * 299.99632 * 11 10 8 40 40 H 1.08998 * 109.47540 * 60.00099 * 11 10 8 41 41 H 0.96698 * 114.00363 * 59.29384 * 13 12 11 42 42 H 1.08997 * 110.71807 * 324.78769 * 14 12 11 43 43 H 1.08997 * 110.71785 * 88.06119 * 14 12 11 44 44 H 1.09001 * 109.88322 * 262.77814 * 15 14 12 45 45 H 1.09003 * 110.00870 * 141.68263 * 15 14 12 46 46 H 0.97000 * 119.99478 * 179.97438 * 20 19 17 47 47 H 1.09001 * 110.37082 * 217.03272 * 25 16 15 48 48 H 1.09005 * 110.36898 * 94.70872 * 25 16 15 49 49 H 1.08999 * 110.48303 * 216.31009 * 26 6 5 50 50 H 1.08996 * 110.48602 * 93.67183 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3335 1.4482 1.2108 6 6 5.7413 1.0064 0.7470 7 1 5.8679 -0.0720 0.8424 8 6 6.8122 1.7420 1.5106 9 8 6.5089 2.4670 2.4344 10 7 8.1070 1.5942 1.1669 11 6 9.1480 2.3097 1.9089 12 6 10.5190 1.9689 1.3211 13 8 10.7993 0.5744 1.4575 14 6 11.6336 2.8277 1.9752 15 6 12.7179 2.8800 0.8783 16 7 12.0546 2.6057 -0.4047 17 6 12.6726 2.5413 -1.6250 18 1 12.0942 2.3331 -2.5130 19 6 14.0426 2.7435 -1.7207 20 7 14.7476 2.9965 -0.6383 21 14 14.8858 2.6550 -3.3852 22 1 13.8785 2.3585 -4.4353 23 1 15.5383 3.9562 -3.6792 24 1 15.9108 1.5807 -3.3644 25 6 10.6137 2.4121 -0.1602 26 6 5.7295 1.4329 -0.7393 27 6 4.2631 1.4431 -1.1107 28 8 3.8337 1.4504 -2.2450 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 4.3713 2.4506 1.6373 37 1 3.9392 0.7414 1.9409 38 1 8.3496 1.0147 0.4279 39 1 8.9762 3.3834 1.8322 40 1 9.1180 2.0109 2.9567 41 1 10.1556 -0.0007 1.0216 42 1 11.2661 3.8284 2.2022 43 1 12.0165 2.3433 2.8733 44 1 13.4779 2.1230 1.0720 45 1 13.1769 3.8684 0.8545 46 1 15.7050 3.1373 -0.7052 47 1 10.2188 1.6350 -0.8146 48 1 10.0742 3.3471 -0.3116 49 1 6.2721 0.7096 -1.3479 50 1 6.1592 2.4280 -0.8541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278811332.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:40 Heat of formation + Delta-G solvation = -123.155375 kcal Electronic energy + Delta-G solvation = -30078.373428 eV Core-core repulsion = 25911.956319 eV Total energy + Delta-G solvation = -4166.417109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.92781 -40.73707 -39.74891 -37.51495 -36.74007 -35.75784 -35.29764 -33.99340 -32.58551 -31.33371 -29.76356 -28.73919 -27.66384 -27.05562 -25.46469 -23.85205 -22.72068 -22.20879 -21.38865 -21.10130 -20.46945 -19.01048 -18.72003 -18.04339 -17.64497 -17.07385 -16.79746 -16.70267 -16.33780 -16.13400 -15.78827 -15.56627 -15.53976 -15.08310 -14.79060 -14.72001 -14.64767 -14.43850 -14.09725 -13.86894 -13.72084 -13.45715 -13.20871 -13.08821 -12.90470 -12.83938 -12.79002 -12.49671 -12.42657 -12.31983 -12.19474 -12.06129 -11.97131 -11.78604 -11.70048 -11.64427 -11.17039 -10.90033 -10.74637 -10.68122 -10.14802 -9.76140 -8.86676 -7.84001 -5.18775 1.45955 1.46648 1.47163 1.55334 1.57302 1.83682 2.16730 2.49669 3.15767 3.22008 3.31571 3.35830 3.50625 3.65632 3.77992 3.86678 3.96627 4.00544 4.01207 4.04491 4.18250 4.34192 4.49810 4.53271 4.55493 4.61943 4.62507 4.68337 4.72209 4.79423 4.86448 4.87657 4.95527 4.97410 5.00826 5.12459 5.15128 5.19107 5.33084 5.33765 5.46496 5.55860 5.66201 5.78894 6.03707 6.20831 6.44855 6.88473 7.06114 7.11008 7.16296 7.78848 8.42210 9.26758 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.002271 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.629987 B =12327.841639 C =13528.731604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.119 3.881 4 N -0.615 5.615 5 C 0.118 3.882 6 C -0.109 4.109 7 H 0.154 0.846 8 C 0.532 3.468 9 O -0.569 6.569 10 N -0.713 5.713 11 C 0.120 3.880 12 C 0.122 3.878 13 O -0.553 6.553 14 C -0.121 4.121 15 C 0.188 3.812 16 N -0.621 5.621 17 C -0.237 4.237 18 H 0.086 0.914 19 C -0.070 4.070 20 N -0.952 5.952 21 Si 0.977 3.023 22 H -0.263 1.263 23 H -0.295 1.295 24 H -0.294 1.294 25 C 0.111 3.889 26 C -0.143 4.143 27 C 0.511 3.489 28 O -0.578 6.578 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.413 0.587 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.384 0.616 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.006 0.994 45 H 0.007 0.993 46 H 0.245 0.755 47 H 0.057 0.943 48 H 0.034 0.966 49 H 0.132 0.868 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.197 -7.158 7.012 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C -0.002 4.002 4 N -0.348 5.348 5 C -0.004 4.004 6 C -0.130 4.130 7 H 0.172 0.828 8 C 0.318 3.682 9 O -0.448 6.448 10 N -0.366 5.366 11 C -0.005 4.005 12 C 0.080 3.920 13 O -0.360 6.360 14 C -0.160 4.160 15 C 0.063 3.937 16 N -0.347 5.347 17 C -0.366 4.366 18 H 0.104 0.896 19 C -0.263 4.263 20 N -0.601 5.601 21 Si 0.806 3.194 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.222 1.222 25 C -0.014 4.014 26 C -0.183 4.183 27 C 0.300 3.700 28 O -0.458 6.458 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.250 0.750 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.233 0.767 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.054 0.946 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.150 0.850 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -26.019 -6.381 7.342 27.778 hybrid contribution 0.813 -0.173 -1.585 1.790 sum -25.206 -6.554 5.757 26.673 Atomic orbital electron populations 1.21686 0.93941 1.02555 1.02395 1.21841 0.97155 0.96110 1.02184 1.21616 0.76993 0.97969 1.03635 1.48482 1.06986 1.72153 1.07164 1.22091 0.87820 1.03886 0.86638 1.22264 0.93100 1.03863 0.93795 0.82801 1.20374 0.83333 0.81066 0.83415 1.90732 1.82465 1.40149 1.31478 1.45833 1.05650 1.48795 1.36282 1.21737 0.84657 0.97661 0.96464 1.22390 0.92864 0.82237 0.94493 1.86624 1.55392 1.15550 1.78437 1.22784 0.95346 0.99404 0.98435 1.20841 0.92292 0.96927 0.83657 1.44637 1.03225 1.83428 1.03421 1.19500 0.91122 1.40425 0.85536 0.89601 1.25664 0.97299 1.02650 1.00704 1.70204 1.05841 1.56145 1.27954 0.85025 0.78369 0.76563 0.79471 1.18721 1.22214 1.22171 1.22393 0.85598 0.98556 0.94887 1.22389 0.93917 1.06239 0.95759 1.21235 0.90229 0.74460 0.84116 1.90719 1.79461 1.52621 1.22980 0.91871 0.93016 0.91235 0.90470 0.93620 0.91579 0.87985 0.90215 0.87292 0.75029 0.90512 0.90094 0.76701 0.88758 0.89990 0.97535 0.97480 0.94566 0.92448 0.94812 0.85024 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.56 16 2 C -0.13 -1.49 6.26 30.60 0.19 -1.30 16 3 C 0.12 1.54 5.94 86.38 0.51 2.05 16 4 N -0.62 -9.33 2.93 -817.62 -2.40 -11.73 16 5 C 0.12 1.36 6.65 86.90 0.58 1.94 16 6 C -0.11 -1.12 3.56 -10.42 -0.04 -1.16 16 7 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 8 C 0.53 8.78 7.07 87.66 0.62 9.40 16 9 O -0.57 -13.82 15.57 -3.05 -0.05 -13.86 16 10 N -0.71 -11.30 5.12 -463.05 -2.37 -13.67 16 11 C 0.12 2.61 4.90 86.38 0.42 3.03 16 12 C 0.12 3.54 0.95 -9.40 -0.01 3.53 16 13 O -0.55 -16.14 13.19 -148.98 -1.96 -18.11 16 14 C -0.12 -4.22 6.16 31.79 0.20 -4.02 16 15 C 0.19 9.22 5.38 86.73 0.47 9.68 16 16 N -0.62 -30.59 3.39 -691.97 -2.35 -32.94 16 17 C -0.24 -12.95 10.28 84.03 0.86 -12.08 16 18 H 0.09 4.43 7.83 -2.91 -0.02 4.40 16 19 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 20 N -0.95 -57.70 10.31 21.65 0.22 -57.48 16 21 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 C 0.11 3.91 5.92 86.85 0.51 4.42 16 26 C -0.14 -1.90 6.37 30.59 0.19 -1.70 16 27 C 0.51 10.35 8.02 87.90 0.70 11.06 16 28 O -0.58 -17.09 17.59 -3.05 -0.05 -17.14 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 1.09 7.92 -2.39 -0.02 1.07 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.19 7.07 -2.39 -0.02 1.17 16 37 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.41 4.75 7.30 -92.71 -0.68 4.07 16 39 H 0.08 1.79 8.11 -2.39 -0.02 1.77 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.38 7.43 8.16 -74.06 -0.60 6.82 16 42 H 0.09 2.87 8.01 -2.39 -0.02 2.85 16 43 H 0.08 2.70 8.14 -2.39 -0.02 2.69 16 44 H 0.01 0.36 7.38 -2.39 -0.02 0.35 16 45 H 0.01 0.39 7.50 -2.39 -0.02 0.37 16 46 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 47 H 0.06 1.80 7.97 -2.39 -0.02 1.78 16 48 H 0.03 1.17 8.04 -2.38 -0.02 1.15 16 49 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.11 1.58 7.89 -2.39 -0.02 1.56 16 Total: -1.00 -80.85 402.86 -0.87 -81.72 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -0.33 Total: 14.76 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 6.40 Total: 20.75 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -6.89 Total: -115.82 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -2.07 Total: -49.12 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -80.85 -0.87 -81.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278811332.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.440 kcal (2) G-P(sol) polarization free energy of solvation -80.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds