Wall clock time and date at job start Tue Mar 31 2020 23:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47313 * 2 1 4 4 H 1.09002 * 109.46823 * 305.72143 * 3 2 1 5 5 C 1.50702 * 109.46825 * 65.71607 * 3 2 1 6 6 O 1.21279 * 120.00324 * 21.77561 * 5 3 2 7 7 N 1.34776 * 119.99892 * 201.77254 * 5 3 2 8 8 C 1.46503 * 119.99711 * 355.06603 * 7 5 3 9 9 C 1.46498 * 120.00060 * 175.07198 * 7 5 3 10 10 C 1.52996 * 109.47060 * 89.99707 * 9 7 5 11 11 H 1.08999 * 109.47388 * 60.00149 * 10 9 7 12 12 O 1.42900 * 109.47429 * 299.99702 * 10 9 7 13 13 C 1.53010 * 109.46968 * 179.97438 * 10 9 7 14 14 N 1.46502 * 109.47121 * 185.00000 * 13 10 9 15 15 C 1.36931 * 119.99684 * 180.02562 * 14 13 10 16 16 H 1.07999 * 120.00688 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99776 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00039 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00157 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47175 * 59.99729 * 19 17 15 21 21 H 1.48494 * 109.47234 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46892 * 300.00020 * 19 17 15 23 23 C 1.50695 * 109.47152 * 185.72122 * 3 2 1 24 24 C 1.41384 * 128.00786 * 120.00251 * 23 3 2 25 25 C 1.50696 * 126.80183 * 359.97438 * 24 23 3 26 26 N 1.30177 * 106.39362 * 179.97438 * 24 23 3 27 27 O 1.20926 * 111.60705 * 359.97438 * 26 24 23 28 28 C 1.34048 * 111.56346 * 359.76318 * 27 26 24 29 29 C 1.50698 * 126.77025 * 180.28571 * 28 27 26 30 30 H 1.09000 * 109.47208 * 304.57328 * 1 2 3 31 31 H 1.09002 * 109.47453 * 64.57444 * 1 2 3 32 32 H 1.09000 * 109.47157 * 184.57707 * 1 2 3 33 33 H 1.09006 * 109.47031 * 240.00157 * 2 1 3 34 34 H 1.08999 * 109.47341 * 120.00102 * 2 1 3 35 35 H 1.09004 * 109.47509 * 274.88896 * 8 7 5 36 36 H 1.08993 * 109.47133 * 34.89560 * 8 7 5 37 37 H 1.09003 * 109.47050 * 154.89316 * 8 7 5 38 38 H 1.08999 * 109.46898 * 329.99557 * 9 7 5 39 39 H 1.09004 * 109.46720 * 209.99730 * 9 7 5 40 40 H 0.96700 * 113.99870 * 300.00701 * 12 10 9 41 41 H 1.08998 * 109.46967 * 305.00400 * 13 10 9 42 42 H 1.09004 * 109.46593 * 65.00359 * 13 10 9 43 43 H 0.97000 * 120.00037 * 359.97438 * 14 13 10 44 44 H 0.97000 * 119.99979 * 180.02562 * 18 17 15 45 45 H 1.09007 * 109.47100 * 90.00253 * 25 24 23 46 46 H 1.08998 * 109.46856 * 210.00218 * 25 24 23 47 47 H 1.09002 * 109.47359 * 330.00435 * 25 24 23 48 48 H 1.09002 * 109.47209 * 270.11139 * 29 28 27 49 49 H 1.08994 * 109.47396 * 30.11519 * 29 28 27 50 50 H 1.09000 * 109.46687 * 150.11424 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9851 -0.8344 5 6 1.6565 2.1109 1.2951 6 8 1.4044 1.4390 2.2729 7 7 1.5937 3.4553 1.3669 8 6 2.0021 4.2698 0.2197 9 6 1.1173 4.1019 2.5920 10 6 2.3017 4.3630 3.5246 11 1 3.0202 5.0137 3.0261 12 8 2.9309 3.1231 3.8543 13 6 1.8042 5.0391 4.8040 14 7 2.9496 5.3969 5.6444 15 6 2.7480 6.0170 6.8485 16 1 1.7447 6.2426 7.1785 17 6 3.8332 6.3565 7.6446 18 7 5.0560 6.0820 7.2423 19 14 3.5583 7.2018 9.2876 20 1 2.7318 6.3299 10.1606 21 1 4.8683 7.4549 9.9395 22 1 2.8560 8.4919 9.0691 23 6 3.5403 1.4449 -0.1416 24 6 4.3172 2.0350 -1.1649 25 6 3.8069 2.8026 -2.3570 26 7 5.5608 1.7839 -0.8731 27 8 5.6581 1.1454 0.1493 28 6 4.4569 0.8877 0.6854 29 6 4.1808 0.1258 1.9560 30 1 -0.3634 0.5832 0.8462 31 1 -0.3634 0.4412 -0.9281 32 1 -0.3633 -1.0244 0.0820 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.0807 4.4247 0.2495 36 1 1.7340 3.7570 -0.7039 37 1 1.4954 5.2341 0.2601 38 1 0.3989 3.4512 3.0905 39 1 0.6374 5.0478 2.3405 40 1 2.3489 2.4934 4.3015 41 1 1.2473 5.9398 4.5459 42 1 1.1544 4.3535 5.3480 43 1 3.8507 5.1939 5.3482 44 1 5.8144 6.3189 7.7987 45 1 3.7332 3.8603 -2.1038 46 1 4.4955 2.6761 -3.1924 47 1 2.8228 2.4267 -2.6371 48 1 4.0648 -0.9335 1.7265 49 1 5.0127 0.2588 2.6475 50 1 3.2651 0.5010 2.4128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278815953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:45 Heat of formation + Delta-G solvation = -21.093038 kcal Electronic energy + Delta-G solvation = -31632.325644 eV Core-core repulsion = 27470.334290 eV Total energy + Delta-G solvation = -4161.991354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.01963 -40.41596 -37.55832 -35.97332 -35.40339 -34.12879 -33.95881 -32.87162 -31.30509 -29.82932 -29.07445 -28.55261 -27.00783 -26.92613 -25.27422 -23.06727 -22.52561 -21.70145 -21.09952 -20.49444 -18.86114 -17.73063 -17.43814 -17.19908 -17.10160 -16.57806 -15.85588 -15.36685 -15.03989 -14.59583 -14.45161 -14.30714 -14.00392 -13.70908 -13.66993 -13.57878 -13.42178 -13.15024 -13.09630 -12.91895 -12.77540 -12.60620 -12.47245 -12.39981 -12.25966 -12.10994 -11.72675 -11.56350 -11.39417 -11.17078 -10.99983 -10.91716 -10.78570 -10.64524 -10.17203 -10.13467 -9.84764 -9.74224 -9.57880 -9.09455 -8.86901 -8.51168 -6.89620 -5.72335 -3.01862 1.38196 1.99622 2.54923 2.89921 3.06048 3.45533 3.49559 3.51195 3.98907 4.23345 4.39751 4.40703 4.59160 4.67214 4.69742 4.88616 4.95768 5.01846 5.02766 5.10770 5.16754 5.20421 5.25524 5.29243 5.39334 5.41808 5.45274 5.47329 5.52818 5.55218 5.57442 5.66351 5.72962 5.74558 5.75562 5.91442 5.95647 6.01766 6.04945 6.16923 6.26045 6.43507 6.54305 6.76491 7.27601 7.70195 8.10181 8.18808 8.23795 8.45815 9.56921 10.15221 10.50753 11.49925 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.002957 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.765169 B = 9465.429724 C =10042.588607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.023 4.023 4 H 0.100 0.900 5 C 0.530 3.470 6 O -0.526 6.526 7 N -0.604 5.604 8 C 0.076 3.924 9 C 0.085 3.915 10 C 0.088 3.912 11 H 0.093 0.907 12 O -0.545 6.545 13 C 0.127 3.873 14 N -0.725 5.725 15 C -0.244 4.244 16 H 0.068 0.932 17 C -0.012 4.012 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.207 4.207 24 C 0.026 3.974 25 C -0.078 4.078 26 N -0.367 5.367 27 O 0.095 5.905 28 C 0.008 3.992 29 C -0.093 4.093 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.373 0.627 41 H 0.023 0.977 42 H 0.020 0.980 43 H 0.388 0.612 44 H 0.256 0.744 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 -11.331 -22.461 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.045 4.045 4 H 0.118 0.882 5 C 0.318 3.682 6 O -0.402 6.402 7 N -0.336 5.336 8 C -0.068 4.068 9 C -0.038 4.038 10 C 0.027 3.973 11 H 0.110 0.890 12 O -0.350 6.350 13 C -0.002 4.002 14 N -0.369 5.369 15 C -0.375 4.375 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.211 4.211 24 C -0.133 4.133 25 C -0.135 4.135 26 N -0.073 5.073 27 O 0.032 5.968 28 C -0.056 4.056 29 C -0.150 4.150 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.220 0.780 41 H 0.040 0.960 42 H 0.038 0.962 43 H 0.222 0.778 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.103 0.897 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.570 -11.019 -22.654 26.305 hybrid contribution -0.927 0.443 1.171 1.558 sum -8.498 -10.576 -21.483 25.408 Atomic orbital electron populations 1.21794 0.95112 1.02304 1.01802 1.21464 0.96306 0.93423 1.03259 1.19623 0.89474 0.98529 0.96902 0.88241 1.20220 0.76500 0.81780 0.89670 1.90601 1.48977 1.63177 1.37476 1.47659 1.65215 1.05771 1.14978 1.21912 1.00714 0.95880 0.88252 1.22310 0.97586 0.98378 0.85566 1.22442 0.93996 0.86569 0.94264 0.88957 1.86547 1.41802 1.26042 1.80635 1.21236 0.91983 0.96421 0.90569 1.42236 1.03643 1.71293 1.19770 1.19171 0.92673 1.30598 0.95046 0.91361 1.24757 0.95236 1.01910 0.98949 1.69673 0.97245 1.52547 1.38326 0.86269 0.76604 0.79366 0.83928 1.21262 1.21658 1.21300 1.20283 0.95767 1.07322 0.97742 1.23332 0.89036 1.01616 0.99326 1.20217 1.01391 0.99028 0.92903 1.73855 1.20458 1.12143 1.00876 1.84830 1.30379 1.53131 1.28428 1.24400 0.83787 0.99479 0.97910 1.20750 1.05845 0.98503 0.89883 0.91928 0.93134 0.92282 0.91331 0.90061 0.92512 0.91323 0.90625 0.89482 0.89724 0.77995 0.95972 0.96179 0.77758 0.93454 0.90020 0.90390 0.90204 0.89724 0.89690 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.76 37.15 0.36 -0.84 16 2 C -0.11 -0.91 4.90 -26.73 -0.13 -1.05 16 3 C -0.02 -0.22 1.73 -92.92 -0.16 -0.38 16 4 H 0.10 0.73 5.59 -51.93 -0.29 0.44 16 5 C 0.53 6.21 4.99 -10.98 -0.05 6.16 16 6 O -0.53 -7.24 11.05 -8.11 -0.09 -7.33 16 7 N -0.60 -6.77 2.83 -181.57 -0.51 -7.28 16 8 C 0.08 0.64 9.99 59.85 0.60 1.24 16 9 C 0.08 1.05 5.18 -4.04 -0.02 1.03 16 10 C 0.09 1.45 3.27 -26.73 -0.09 1.37 16 11 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 12 O -0.55 -9.88 11.99 -48.90 -0.59 -10.47 16 13 C 0.13 2.53 5.90 -4.04 -0.02 2.51 16 14 N -0.72 -18.94 5.55 -59.90 -0.33 -19.28 16 15 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 19 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.21 -2.28 4.61 -104.42 -0.48 -2.76 16 24 C 0.03 0.29 7.33 -82.10 -0.60 -0.31 16 25 C -0.08 -0.55 9.89 36.00 0.36 -0.20 16 26 N -0.37 -5.05 12.07 33.43 0.40 -4.65 16 27 O 0.10 1.33 11.20 17.15 0.19 1.53 16 28 C 0.01 0.10 7.34 -35.30 -0.26 -0.16 16 29 C -0.09 -1.03 9.04 36.00 0.33 -0.70 16 30 H 0.06 0.61 6.73 -51.93 -0.35 0.26 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.79 6.27 -51.93 -0.33 0.46 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.42 5.71 -51.93 -0.30 0.13 16 37 H 0.07 0.52 7.84 -51.93 -0.41 0.12 16 38 H 0.09 1.11 7.50 -51.93 -0.39 0.72 16 39 H 0.08 0.88 7.86 -51.93 -0.41 0.47 16 40 H 0.37 6.28 8.31 45.56 0.38 6.66 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.39 10.99 7.67 -40.82 -0.31 10.67 16 44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.39 7.55 -51.93 -0.39 0.00 16 48 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 49 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.12 1.49 4.86 -51.93 -0.25 1.24 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -34.61 399.59 -6.87 -41.47 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -7.24 Total: 12.17 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.43 Total: -1.69 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.28 Total: -59.46 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.48 Total: -16.27 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.61 -6.87 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278815953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.381 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds