Wall clock time and date at job start Tue Mar 31 2020 23:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47313 * 2 1 4 4 H 1.09002 * 109.46823 * 305.72143 * 3 2 1 5 5 C 1.50702 * 109.46825 * 65.71607 * 3 2 1 6 6 O 1.21279 * 120.00324 * 21.77561 * 5 3 2 7 7 N 1.34776 * 119.99892 * 201.77254 * 5 3 2 8 8 C 1.46503 * 119.99711 * 355.06603 * 7 5 3 9 9 C 1.46498 * 120.00060 * 175.07198 * 7 5 3 10 10 C 1.52996 * 109.47060 * 89.99707 * 9 7 5 11 11 H 1.08999 * 109.47388 * 60.00149 * 10 9 7 12 12 O 1.42900 * 109.47429 * 299.99702 * 10 9 7 13 13 C 1.53010 * 109.46968 * 179.97438 * 10 9 7 14 14 N 1.46502 * 109.47121 * 185.00000 * 13 10 9 15 15 C 1.36931 * 119.99684 * 180.02562 * 14 13 10 16 16 H 1.07999 * 120.00688 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99776 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00039 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00157 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47175 * 59.99729 * 19 17 15 21 21 H 1.48494 * 109.47234 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46892 * 300.00020 * 19 17 15 23 23 C 1.50695 * 109.47152 * 185.72122 * 3 2 1 24 24 C 1.41384 * 128.00786 * 120.00251 * 23 3 2 25 25 C 1.50696 * 126.80183 * 359.97438 * 24 23 3 26 26 N 1.30177 * 106.39362 * 179.97438 * 24 23 3 27 27 O 1.20926 * 111.60705 * 359.97438 * 26 24 23 28 28 C 1.34048 * 111.56346 * 359.76318 * 27 26 24 29 29 C 1.50698 * 126.77025 * 180.28571 * 28 27 26 30 30 H 1.09000 * 109.47208 * 304.57328 * 1 2 3 31 31 H 1.09002 * 109.47453 * 64.57444 * 1 2 3 32 32 H 1.09000 * 109.47157 * 184.57707 * 1 2 3 33 33 H 1.09006 * 109.47031 * 240.00157 * 2 1 3 34 34 H 1.08999 * 109.47341 * 120.00102 * 2 1 3 35 35 H 1.09004 * 109.47509 * 274.88896 * 8 7 5 36 36 H 1.08993 * 109.47133 * 34.89560 * 8 7 5 37 37 H 1.09003 * 109.47050 * 154.89316 * 8 7 5 38 38 H 1.08999 * 109.46898 * 329.99557 * 9 7 5 39 39 H 1.09004 * 109.46720 * 209.99730 * 9 7 5 40 40 H 0.96700 * 113.99870 * 300.00701 * 12 10 9 41 41 H 1.08998 * 109.46967 * 305.00400 * 13 10 9 42 42 H 1.09004 * 109.46593 * 65.00359 * 13 10 9 43 43 H 0.97000 * 120.00037 * 359.97438 * 14 13 10 44 44 H 0.97000 * 119.99979 * 180.02562 * 18 17 15 45 45 H 1.09007 * 109.47100 * 90.00253 * 25 24 23 46 46 H 1.08998 * 109.46856 * 210.00218 * 25 24 23 47 47 H 1.09002 * 109.47359 * 330.00435 * 25 24 23 48 48 H 1.09002 * 109.47209 * 270.11139 * 29 28 27 49 49 H 1.08994 * 109.47396 * 30.11519 * 29 28 27 50 50 H 1.09000 * 109.46687 * 150.11424 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9851 -0.8344 5 6 1.6565 2.1109 1.2951 6 8 1.4044 1.4390 2.2729 7 7 1.5937 3.4553 1.3669 8 6 2.0021 4.2698 0.2197 9 6 1.1173 4.1019 2.5920 10 6 2.3017 4.3630 3.5246 11 1 3.0202 5.0137 3.0261 12 8 2.9309 3.1231 3.8543 13 6 1.8042 5.0391 4.8040 14 7 2.9496 5.3969 5.6444 15 6 2.7480 6.0170 6.8485 16 1 1.7447 6.2426 7.1785 17 6 3.8332 6.3565 7.6446 18 7 5.0560 6.0820 7.2423 19 14 3.5583 7.2018 9.2876 20 1 2.7318 6.3299 10.1606 21 1 4.8683 7.4549 9.9395 22 1 2.8560 8.4919 9.0691 23 6 3.5403 1.4449 -0.1416 24 6 4.3172 2.0350 -1.1649 25 6 3.8069 2.8026 -2.3570 26 7 5.5608 1.7839 -0.8731 27 8 5.6581 1.1454 0.1493 28 6 4.4569 0.8877 0.6854 29 6 4.1808 0.1258 1.9560 30 1 -0.3634 0.5832 0.8462 31 1 -0.3634 0.4412 -0.9281 32 1 -0.3633 -1.0244 0.0820 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.0807 4.4247 0.2495 36 1 1.7340 3.7570 -0.7039 37 1 1.4954 5.2341 0.2601 38 1 0.3989 3.4512 3.0905 39 1 0.6374 5.0478 2.3405 40 1 2.3489 2.4934 4.3015 41 1 1.2473 5.9398 4.5459 42 1 1.1544 4.3535 5.3480 43 1 3.8507 5.1939 5.3482 44 1 5.8144 6.3189 7.7987 45 1 3.7332 3.8603 -2.1038 46 1 4.4955 2.6761 -3.1924 47 1 2.8228 2.4267 -2.6371 48 1 4.0648 -0.9335 1.7265 49 1 5.0127 0.2588 2.6475 50 1 3.2651 0.5010 2.4128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278815953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:43 Heat of formation + Delta-G solvation = -45.278078 kcal Electronic energy + Delta-G solvation = -31633.374386 eV Core-core repulsion = 27470.334290 eV Total energy + Delta-G solvation = -4163.040096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.92903 -41.32132 -38.86153 -36.87833 -36.46607 -35.82845 -34.94886 -33.68150 -33.21049 -31.14822 -29.79086 -29.49785 -28.06686 -27.77555 -26.65130 -24.71432 -23.33624 -22.92996 -22.33790 -21.36148 -19.72995 -19.23404 -18.66353 -18.30360 -18.08440 -17.77617 -16.83201 -16.58064 -16.51628 -16.16078 -15.69781 -15.24538 -15.10017 -14.78952 -14.74134 -14.39995 -14.29682 -14.26068 -14.07796 -13.86991 -13.85521 -13.66682 -13.42690 -13.30669 -13.19869 -13.06891 -12.93925 -12.74359 -12.58039 -12.47439 -12.23416 -12.17111 -12.02215 -11.92997 -11.81871 -11.71205 -11.09459 -10.97271 -10.95606 -10.67742 -10.00056 -9.51419 -9.02602 -7.95544 -5.25786 0.44351 1.15358 1.45263 1.49317 1.55528 1.66109 2.04890 2.15444 2.54928 3.22618 3.35738 3.43506 3.53342 3.63226 3.65629 3.80096 3.92471 4.03634 4.07897 4.23040 4.27729 4.32205 4.41005 4.46869 4.51877 4.56814 4.58535 4.59506 4.63435 4.70564 4.74796 4.78491 4.81283 4.89719 4.91663 4.93592 4.93962 5.12459 5.16751 5.24494 5.27845 5.36934 5.43273 5.45303 5.53765 6.24622 6.42087 6.85690 7.23470 7.26823 7.30972 8.07588 8.30085 9.27655 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.002957 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.765169 B = 9465.429724 C =10042.588607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.016 4.016 4 H 0.130 0.870 5 C 0.524 3.476 6 O -0.550 6.550 7 N -0.606 5.606 8 C 0.069 3.931 9 C 0.097 3.903 10 C 0.098 3.902 11 H 0.077 0.923 12 O -0.562 6.562 13 C 0.125 3.875 14 N -0.741 5.741 15 C -0.249 4.249 16 H 0.078 0.922 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.977 3.023 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.274 1.274 23 C -0.202 4.202 24 C 0.036 3.964 25 C -0.082 4.082 26 N -0.400 5.400 27 O 0.067 5.933 28 C -0.011 4.011 29 C -0.088 4.088 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.376 0.624 41 H 0.038 0.962 42 H 0.024 0.976 43 H 0.372 0.628 44 H 0.251 0.749 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.110 0.890 48 H 0.106 0.894 49 H 0.075 0.925 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.585 -10.806 -24.293 29.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.038 4.038 4 H 0.147 0.853 5 C 0.312 3.688 6 O -0.429 6.429 7 N -0.338 5.338 8 C -0.073 4.073 9 C -0.027 4.027 10 C 0.038 3.962 11 H 0.095 0.905 12 O -0.368 6.368 13 C -0.003 4.003 14 N -0.384 5.384 15 C -0.381 4.381 16 H 0.096 0.904 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.806 3.194 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.200 1.200 23 C -0.206 4.206 24 C -0.124 4.124 25 C -0.139 4.139 26 N -0.112 5.112 27 O 0.008 5.992 28 C -0.074 4.074 29 C -0.145 4.145 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.224 0.776 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.204 0.796 44 H 0.059 0.941 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.128 0.872 48 H 0.125 0.875 49 H 0.094 0.906 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.146 -10.508 -24.494 28.519 hybrid contribution -0.189 0.256 1.686 1.715 sum -10.335 -10.251 -22.809 27.058 Atomic orbital electron populations 1.21751 0.94359 1.02503 1.01924 1.21463 0.96872 0.92805 1.03175 1.19689 0.88290 0.99224 0.96568 0.85266 1.20687 0.75956 0.81917 0.90204 1.90593 1.49920 1.63816 1.38534 1.47757 1.64941 1.05948 1.15143 1.22139 0.99883 0.97003 0.88322 1.22091 0.95348 0.99832 0.85454 1.22341 0.95119 0.85394 0.93394 0.90509 1.86529 1.42783 1.26635 1.80832 1.21451 0.90297 0.97204 0.91306 1.42470 1.04561 1.71327 1.20039 1.19643 0.93043 1.29593 0.95829 0.90389 1.25649 0.95008 1.03438 1.02878 1.69855 0.98052 1.54475 1.39743 0.85162 0.76251 0.78645 0.79391 1.20325 1.22253 1.19982 1.20503 0.96437 1.06484 0.97222 1.24009 0.88137 1.00322 0.99937 1.20477 1.02849 0.99326 0.91220 1.73850 1.22195 1.13670 1.01454 1.84789 1.31208 1.54098 1.29057 1.24735 0.84019 1.00124 0.98554 1.20709 1.04632 0.99761 0.89420 0.93903 0.91138 0.91788 0.89896 0.91706 0.94267 0.88431 0.88570 0.89678 0.86921 0.77611 0.94394 0.95850 0.79604 0.94069 0.88655 0.90030 0.87191 0.87522 0.90609 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.76 71.98 0.70 -1.28 16 2 C -0.11 -1.59 4.90 30.59 0.15 -1.44 16 3 C -0.02 -0.27 1.73 -12.29 -0.02 -0.29 16 4 H 0.13 1.31 5.59 -2.39 -0.01 1.30 16 5 C 0.52 11.49 4.99 87.66 0.44 11.93 16 6 O -0.55 -14.95 11.05 10.04 0.11 -14.84 16 7 N -0.61 -12.33 2.83 -846.76 -2.39 -14.72 16 8 C 0.07 0.96 9.99 127.77 1.28 2.23 16 9 C 0.10 2.21 5.18 86.38 0.45 2.66 16 10 C 0.10 3.21 3.27 30.60 0.10 3.31 16 11 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 12 O -0.56 -20.83 11.99 -135.91 -1.63 -22.46 16 13 C 0.12 4.91 5.90 86.38 0.51 5.42 16 14 N -0.74 -39.21 5.55 -343.43 -1.91 -41.11 16 15 C -0.25 -14.31 9.99 84.03 0.84 -13.47 16 16 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 17 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 18 N -0.97 -61.90 13.06 21.65 0.28 -61.62 16 19 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 23 C -0.20 -4.20 4.61 -19.74 -0.09 -4.29 16 24 C 0.04 0.74 7.33 43.58 0.32 1.06 16 25 C -0.08 -0.90 9.89 71.23 0.70 -0.19 16 26 N -0.40 -11.09 12.07 -49.54 -0.60 -11.69 16 27 O 0.07 1.94 11.20 71.56 0.80 2.74 16 28 C -0.01 -0.28 7.34 25.04 0.18 -0.10 16 29 C -0.09 -2.04 9.04 71.24 0.64 -1.40 16 30 H 0.04 0.75 6.73 -2.39 -0.02 0.74 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.06 1.20 6.27 -2.39 -0.01 1.19 16 35 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 0.77 5.71 -2.39 -0.01 0.75 16 37 H 0.10 0.96 7.84 -2.39 -0.02 0.94 16 38 H 0.08 2.03 7.50 -2.39 -0.02 2.01 16 39 H 0.11 1.97 7.86 -2.38 -0.02 1.95 16 40 H 0.38 13.06 8.31 -74.06 -0.62 12.45 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.02 0.92 8.14 -2.38 -0.02 0.91 16 43 H 0.37 21.72 7.67 -92.71 -0.71 21.01 16 44 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.11 0.54 7.55 -2.39 -0.02 0.53 16 48 H 0.11 1.89 8.12 -2.39 -0.02 1.87 16 49 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.10 2.74 4.86 -2.39 -0.01 2.73 16 Total: -1.00 -77.21 399.59 3.01 -74.20 By element: Atomic # 1 Polarization: 40.72 SS G_CDS: -0.36 Total: 40.37 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 6.67 Total: 0.03 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -4.62 Total: -129.13 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.72 Total: -34.56 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -77.21 3.01 -74.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278815953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.926 kcal (2) G-P(sol) polarization free energy of solvation -77.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds