Wall clock time and date at job start Tue Mar 31 2020 23:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46864 * 2 1 4 4 H 1.08992 * 109.47424 * 305.86413 * 3 2 1 5 5 C 1.50703 * 109.47022 * 65.86883 * 3 2 1 6 6 O 1.21274 * 119.99832 * 21.15039 * 5 3 2 7 7 N 1.34777 * 119.99593 * 201.15061 * 5 3 2 8 8 C 1.46501 * 120.00124 * 4.92508 * 7 5 3 9 9 C 1.46506 * 119.99649 * 184.92569 * 7 5 3 10 10 C 1.52996 * 109.46829 * 269.99881 * 9 7 5 11 11 H 1.09000 * 109.47490 * 304.99878 * 10 9 7 12 12 O 1.42901 * 109.47299 * 65.00565 * 10 9 7 13 13 C 1.53000 * 109.47071 * 184.99959 * 10 9 7 14 14 N 1.46492 * 109.47429 * 180.02562 * 13 10 9 15 15 C 1.36942 * 120.00313 * 179.72437 * 14 13 10 16 16 H 1.07996 * 119.99404 * 0.28435 * 15 14 13 17 17 C 1.38811 * 120.00210 * 180.27672 * 15 14 13 18 18 N 1.31620 * 119.99809 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00007 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47206 * 119.99823 * 19 17 15 22 22 H 1.48503 * 109.46948 * 240.00037 * 19 17 15 23 23 C 1.50705 * 109.46629 * 185.86569 * 3 2 1 24 24 C 1.41380 * 128.00665 * 120.00462 * 23 3 2 25 25 C 1.50706 * 126.80282 * 359.97438 * 24 23 3 26 26 N 1.30174 * 106.39789 * 179.97438 * 24 23 3 27 27 O 1.20927 * 111.60302 * 359.97438 * 26 24 23 28 28 C 1.34041 * 111.56412 * 359.76501 * 27 26 24 29 29 C 1.50706 * 126.77554 * 180.28803 * 28 27 26 30 30 H 1.08996 * 109.47073 * 294.39803 * 1 2 3 31 31 H 1.08999 * 109.47052 * 54.39711 * 1 2 3 32 32 H 1.08998 * 109.46844 * 174.39728 * 1 2 3 33 33 H 1.08995 * 109.47020 * 240.00208 * 2 1 3 34 34 H 1.08998 * 109.47205 * 120.00086 * 2 1 3 35 35 H 1.08999 * 109.47154 * 275.24361 * 8 7 5 36 36 H 1.08999 * 109.47211 * 35.25140 * 8 7 5 37 37 H 1.09000 * 109.46606 * 155.24783 * 8 7 5 38 38 H 1.09003 * 109.46523 * 150.00022 * 9 7 5 39 39 H 1.08997 * 109.46901 * 30.00208 * 9 7 5 40 40 H 0.96695 * 114.00036 * 59.99499 * 12 10 9 41 41 H 1.09006 * 109.46680 * 60.00068 * 13 10 9 42 42 H 1.08997 * 109.47313 * 300.00911 * 13 10 9 43 43 H 0.96998 * 120.00147 * 0.02562 * 14 13 10 44 44 H 0.97004 * 119.99258 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.46989 * 89.99680 * 25 24 23 46 46 H 1.08994 * 109.46990 * 210.00635 * 25 24 23 47 47 H 1.09000 * 109.46694 * 330.00369 * 25 24 23 48 48 H 1.08993 * 109.46848 * 270.10955 * 29 28 27 49 49 H 1.09002 * 109.47044 * 30.10736 * 29 28 27 50 50 H 1.08996 * 109.47319 * 150.10971 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5935 1.9858 -0.8328 5 6 1.6597 2.1098 1.2967 6 8 1.3992 1.4367 2.2713 7 7 1.6093 3.4544 1.3731 8 6 1.8180 4.2648 0.1706 9 6 1.3457 4.1056 2.6588 10 6 -0.1623 4.2945 2.8350 11 1 -0.5623 4.8410 1.9809 12 8 -0.7956 3.0165 2.9218 13 6 -0.4308 5.0848 4.1173 14 7 -1.8747 5.2652 4.2864 15 6 -2.3574 5.9428 5.3742 16 1 -1.6733 6.3480 6.1050 17 6 -3.7259 6.1087 5.5374 18 7 -4.5595 5.6153 4.6463 19 14 -4.3842 7.0336 7.0209 20 1 -3.2497 7.4861 7.8656 21 1 -5.1616 8.2134 6.5638 22 1 -5.2645 6.1370 7.8124 23 6 3.5400 1.4450 -0.1452 24 6 4.3145 2.0360 -1.1698 25 6 3.8013 2.8047 -2.3601 26 7 5.5587 1.7847 -0.8813 27 8 5.6585 1.1453 0.1403 28 6 4.4587 0.8871 0.6791 29 6 4.1855 0.1241 1.9497 30 1 -0.3633 0.4245 0.9359 31 1 -0.3633 0.5983 -0.8356 32 1 -0.3633 -1.0227 -0.1003 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.8863 4.4144 0.0142 36 1 1.3927 3.7515 -0.6918 37 1 1.3301 5.2316 0.2950 38 1 1.8388 5.0774 2.6815 39 1 1.7309 3.4836 3.4667 40 1 -0.4876 2.4743 3.6609 41 1 0.0523 6.0597 4.0510 42 1 -0.0308 4.5384 4.9713 43 1 -2.4892 4.9010 3.6301 44 1 -5.5158 5.7311 4.7607 45 1 3.7281 3.8621 -2.1057 46 1 4.4878 2.6789 -3.1973 47 1 2.8166 2.4289 -2.6381 48 1 4.0689 -0.9349 1.7196 49 1 5.0192 0.2564 2.6393 50 1 3.2709 0.4989 2.4091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278815955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:53 Heat of formation + Delta-G solvation = -21.698357 kcal Electronic energy + Delta-G solvation = -31215.243130 eV Core-core repulsion = 27053.225527 eV Total energy + Delta-G solvation = -4162.017602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.21600 -40.40914 -37.58247 -36.04342 -35.40538 -34.24802 -33.94851 -32.98123 -31.30254 -29.83978 -29.16470 -28.65875 -27.12910 -26.95805 -25.27068 -23.07206 -22.59904 -21.71872 -21.07743 -20.62929 -18.89133 -17.93050 -17.47681 -17.30914 -17.13649 -16.48492 -16.07473 -15.31050 -15.03960 -14.72114 -14.38977 -14.21281 -14.09217 -13.89122 -13.79224 -13.59489 -13.49489 -13.28280 -13.13637 -12.93650 -12.78885 -12.65358 -12.51898 -12.50047 -12.26093 -12.11563 -11.72472 -11.50768 -11.44958 -11.20696 -10.98189 -10.91989 -10.82874 -10.61946 -10.25230 -10.11058 -9.90936 -9.76848 -9.63022 -9.22673 -8.89114 -8.51057 -6.90597 -5.73985 -3.03287 1.16908 1.84547 2.52779 2.82948 2.91358 3.43909 3.49075 3.51674 3.84530 4.12645 4.30355 4.40792 4.57462 4.58412 4.74648 4.87276 4.92740 4.94146 5.00080 5.06383 5.09355 5.19337 5.19456 5.21590 5.27080 5.32239 5.39495 5.47017 5.49843 5.54674 5.56371 5.61085 5.66162 5.72687 5.76030 5.79964 5.90244 6.01093 6.08378 6.24692 6.30120 6.42650 6.53148 6.74890 7.27512 7.70158 7.99433 8.10802 8.24203 8.44563 9.55836 10.14177 10.49949 11.48417 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.002468 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.072952 B =11343.057002 C =11541.038181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C -0.027 4.027 4 H 0.102 0.898 5 C 0.530 3.470 6 O -0.522 6.522 7 N -0.605 5.605 8 C 0.076 3.924 9 C 0.085 3.915 10 C 0.088 3.912 11 H 0.093 0.907 12 O -0.544 6.544 13 C 0.125 3.875 14 N -0.725 5.725 15 C -0.242 4.242 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.197 4.197 24 C 0.029 3.971 25 C -0.080 4.080 26 N -0.367 5.367 27 O 0.094 5.906 28 C -0.008 4.008 29 C -0.093 4.093 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.374 0.626 41 H 0.023 0.977 42 H 0.020 0.980 43 H 0.389 0.611 44 H 0.254 0.746 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.538 -10.033 -14.625 26.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.142 4.142 3 C -0.049 4.049 4 H 0.120 0.880 5 C 0.318 3.682 6 O -0.398 6.398 7 N -0.338 5.338 8 C -0.067 4.067 9 C -0.038 4.038 10 C 0.027 3.973 11 H 0.111 0.889 12 O -0.349 6.349 13 C -0.004 4.004 14 N -0.370 5.370 15 C -0.373 4.373 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.202 4.202 24 C -0.130 4.130 25 C -0.137 4.137 26 N -0.074 5.074 27 O 0.031 5.969 28 C -0.072 4.072 29 C -0.150 4.150 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.221 0.779 41 H 0.041 0.959 42 H 0.038 0.962 43 H 0.223 0.777 44 H 0.064 0.936 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.107 0.893 49 H 0.100 0.900 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 20.261 -9.773 -15.058 27.070 hybrid contribution -0.990 0.437 1.110 1.550 sum 19.271 -9.336 -13.948 25.555 Atomic orbital electron populations 1.21823 0.94512 1.01933 1.03095 1.21447 0.96857 0.92999 1.02866 1.19701 0.88964 0.98946 0.97286 0.87987 1.20180 0.76466 0.81811 0.89781 1.90611 1.48124 1.62943 1.38142 1.47677 1.70802 1.05792 1.09501 1.21882 1.01020 0.96517 0.87313 1.22293 0.97812 0.98274 0.85400 1.22447 0.90099 0.85618 0.99130 0.88871 1.86544 1.66682 1.27482 1.54178 1.21234 0.88566 0.96506 0.94044 1.42246 0.99777 1.66655 1.28289 1.19261 0.90652 1.27045 1.00324 0.91269 1.24761 0.95984 1.01500 0.98716 1.69698 1.01927 1.50291 1.35836 0.86123 0.78723 0.79140 0.82224 1.20592 1.21873 1.21826 1.20418 0.96043 1.06350 0.97359 1.23395 0.88898 1.01381 0.99348 1.20242 1.01630 0.99038 0.92796 1.73857 1.20498 1.12193 1.00845 1.84815 1.30333 1.53260 1.28497 1.24376 0.83988 1.00362 0.98462 1.20736 1.05129 0.99286 0.89832 0.90893 0.93101 0.92458 0.91570 0.90300 0.92823 0.91249 0.90352 0.89810 0.89571 0.77903 0.95934 0.96246 0.77657 0.93569 0.89914 0.90334 0.89936 0.89262 0.90047 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.62 37.16 0.36 -1.23 16 2 C -0.10 -0.95 4.90 -26.73 -0.13 -1.09 16 3 C -0.03 -0.25 1.78 -92.92 -0.17 -0.42 16 4 H 0.10 0.82 5.45 -51.93 -0.28 0.53 16 5 C 0.53 6.24 5.23 -10.98 -0.06 6.18 16 6 O -0.52 -7.26 11.20 -7.33 -0.08 -7.35 16 7 N -0.61 -6.77 2.86 -181.57 -0.52 -7.29 16 8 C 0.08 0.63 10.02 59.85 0.60 1.22 16 9 C 0.09 1.06 5.08 -4.04 -0.02 1.04 16 10 C 0.09 1.42 3.30 -26.73 -0.09 1.33 16 11 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 12 O -0.54 -9.86 11.81 -48.12 -0.57 -10.43 16 13 C 0.13 2.47 5.92 -4.05 -0.02 2.45 16 14 N -0.72 -18.72 5.49 -59.91 -0.33 -19.05 16 15 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 19 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 C -0.20 -1.90 4.86 -104.42 -0.51 -2.40 16 24 C 0.03 0.28 7.33 -82.10 -0.60 -0.32 16 25 C -0.08 -0.50 10.26 36.01 0.37 -0.13 16 26 N -0.37 -4.24 12.07 33.42 0.40 -3.84 16 27 O 0.09 1.06 11.20 17.17 0.19 1.25 16 28 C -0.01 -0.08 7.34 -35.30 -0.26 -0.34 16 29 C -0.09 -0.75 9.05 36.01 0.33 -0.43 16 30 H 0.07 0.95 6.94 -51.93 -0.36 0.59 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.77 6.27 -51.93 -0.33 0.44 16 35 H 0.05 0.40 7.94 -51.93 -0.41 -0.01 16 36 H 0.07 0.47 6.23 -51.93 -0.32 0.15 16 37 H 0.08 0.60 8.03 -51.93 -0.42 0.19 16 38 H 0.08 0.89 8.07 -51.93 -0.42 0.48 16 39 H 0.09 1.12 7.50 -51.93 -0.39 0.73 16 40 H 0.37 6.35 8.63 45.56 0.39 6.74 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.39 10.85 7.54 -40.82 -0.31 10.55 16 44 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.08 0.42 7.94 -51.93 -0.41 0.01 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.39 7.55 -51.93 -0.39 0.00 16 48 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.11 1.13 4.88 -51.93 -0.25 0.88 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -34.26 401.11 -6.86 -41.12 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -7.25 Total: 11.57 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -0.45 Total: -1.65 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.28 Total: -58.16 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.46 Total: -16.52 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.26 -6.86 -41.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278815955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.417 kcal (2) G-P(sol) polarization free energy of solvation -34.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds