Wall clock time and date at job start Tue Mar 31 2020 23:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46864 * 2 1 4 4 H 1.08992 * 109.47424 * 305.86413 * 3 2 1 5 5 C 1.50703 * 109.47022 * 65.86883 * 3 2 1 6 6 O 1.21274 * 119.99832 * 21.15039 * 5 3 2 7 7 N 1.34777 * 119.99593 * 201.15061 * 5 3 2 8 8 C 1.46501 * 120.00124 * 4.92508 * 7 5 3 9 9 C 1.46506 * 119.99649 * 184.92569 * 7 5 3 10 10 C 1.52996 * 109.46829 * 269.99881 * 9 7 5 11 11 H 1.09000 * 109.47490 * 304.99878 * 10 9 7 12 12 O 1.42901 * 109.47299 * 65.00565 * 10 9 7 13 13 C 1.53000 * 109.47071 * 184.99959 * 10 9 7 14 14 N 1.46492 * 109.47429 * 180.02562 * 13 10 9 15 15 C 1.36942 * 120.00313 * 179.72437 * 14 13 10 16 16 H 1.07996 * 119.99404 * 0.28435 * 15 14 13 17 17 C 1.38811 * 120.00210 * 180.27672 * 15 14 13 18 18 N 1.31620 * 119.99809 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00007 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47206 * 119.99823 * 19 17 15 22 22 H 1.48503 * 109.46948 * 240.00037 * 19 17 15 23 23 C 1.50705 * 109.46629 * 185.86569 * 3 2 1 24 24 C 1.41380 * 128.00665 * 120.00462 * 23 3 2 25 25 C 1.50706 * 126.80282 * 359.97438 * 24 23 3 26 26 N 1.30174 * 106.39789 * 179.97438 * 24 23 3 27 27 O 1.20927 * 111.60302 * 359.97438 * 26 24 23 28 28 C 1.34041 * 111.56412 * 359.76501 * 27 26 24 29 29 C 1.50706 * 126.77554 * 180.28803 * 28 27 26 30 30 H 1.08996 * 109.47073 * 294.39803 * 1 2 3 31 31 H 1.08999 * 109.47052 * 54.39711 * 1 2 3 32 32 H 1.08998 * 109.46844 * 174.39728 * 1 2 3 33 33 H 1.08995 * 109.47020 * 240.00208 * 2 1 3 34 34 H 1.08998 * 109.47205 * 120.00086 * 2 1 3 35 35 H 1.08999 * 109.47154 * 275.24361 * 8 7 5 36 36 H 1.08999 * 109.47211 * 35.25140 * 8 7 5 37 37 H 1.09000 * 109.46606 * 155.24783 * 8 7 5 38 38 H 1.09003 * 109.46523 * 150.00022 * 9 7 5 39 39 H 1.08997 * 109.46901 * 30.00208 * 9 7 5 40 40 H 0.96695 * 114.00036 * 59.99499 * 12 10 9 41 41 H 1.09006 * 109.46680 * 60.00068 * 13 10 9 42 42 H 1.08997 * 109.47313 * 300.00911 * 13 10 9 43 43 H 0.96998 * 120.00147 * 0.02562 * 14 13 10 44 44 H 0.97004 * 119.99258 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.46989 * 89.99680 * 25 24 23 46 46 H 1.08994 * 109.46990 * 210.00635 * 25 24 23 47 47 H 1.09000 * 109.46694 * 330.00369 * 25 24 23 48 48 H 1.08993 * 109.46848 * 270.10955 * 29 28 27 49 49 H 1.09002 * 109.47044 * 30.10736 * 29 28 27 50 50 H 1.08996 * 109.47319 * 150.10971 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5935 1.9858 -0.8328 5 6 1.6597 2.1098 1.2967 6 8 1.3992 1.4367 2.2713 7 7 1.6093 3.4544 1.3731 8 6 1.8180 4.2648 0.1706 9 6 1.3457 4.1056 2.6588 10 6 -0.1623 4.2945 2.8350 11 1 -0.5623 4.8410 1.9809 12 8 -0.7956 3.0165 2.9218 13 6 -0.4308 5.0848 4.1173 14 7 -1.8747 5.2652 4.2864 15 6 -2.3574 5.9428 5.3742 16 1 -1.6733 6.3480 6.1050 17 6 -3.7259 6.1087 5.5374 18 7 -4.5595 5.6153 4.6463 19 14 -4.3842 7.0336 7.0209 20 1 -3.2497 7.4861 7.8656 21 1 -5.1616 8.2134 6.5638 22 1 -5.2645 6.1370 7.8124 23 6 3.5400 1.4450 -0.1452 24 6 4.3145 2.0360 -1.1698 25 6 3.8013 2.8047 -2.3601 26 7 5.5587 1.7847 -0.8813 27 8 5.6585 1.1453 0.1403 28 6 4.4587 0.8871 0.6791 29 6 4.1855 0.1241 1.9497 30 1 -0.3633 0.4245 0.9359 31 1 -0.3633 0.5983 -0.8356 32 1 -0.3633 -1.0227 -0.1003 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.8863 4.4144 0.0142 36 1 1.3927 3.7515 -0.6918 37 1 1.3301 5.2316 0.2950 38 1 1.8388 5.0774 2.6815 39 1 1.7309 3.4836 3.4667 40 1 -0.4876 2.4743 3.6609 41 1 0.0523 6.0597 4.0510 42 1 -0.0308 4.5384 4.9713 43 1 -2.4892 4.9010 3.6301 44 1 -5.5158 5.7311 4.7607 45 1 3.7281 3.8621 -2.1057 46 1 4.4878 2.6789 -3.1973 47 1 2.8166 2.4289 -2.6381 48 1 4.0689 -0.9349 1.7196 49 1 5.0192 0.2564 2.6393 50 1 3.2709 0.4989 2.4091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278815955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:52 Heat of formation + Delta-G solvation = -45.173147 kcal Electronic energy + Delta-G solvation = -31216.261073 eV Core-core repulsion = 27053.225527 eV Total energy + Delta-G solvation = -4163.035546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.96094 -41.30779 -38.86657 -36.88842 -36.45743 -35.79771 -34.96781 -33.71359 -33.18285 -31.14796 -29.80183 -29.49186 -28.08886 -27.79446 -26.64486 -24.71763 -23.35535 -22.92948 -22.29617 -21.36246 -19.73240 -19.22773 -18.69874 -18.32157 -18.08283 -17.68466 -17.03803 -16.50933 -16.45229 -16.10723 -15.75509 -15.26951 -14.93558 -14.88526 -14.77058 -14.50334 -14.30860 -14.23244 -14.06706 -13.88139 -13.77757 -13.66947 -13.45721 -13.28957 -13.20816 -13.09855 -12.93499 -12.80790 -12.61042 -12.45125 -12.21653 -12.13150 -12.01151 -11.91175 -11.81102 -11.72942 -11.12084 -10.99217 -10.94248 -10.67106 -10.02690 -9.49761 -9.00846 -7.94785 -5.24475 0.42044 1.13514 1.46568 1.48002 1.57952 1.66150 2.01475 2.14551 2.55535 3.19547 3.36767 3.42917 3.53518 3.60366 3.66632 3.80904 3.89559 4.04369 4.10747 4.22779 4.25383 4.31809 4.40026 4.47605 4.51874 4.55613 4.57619 4.59788 4.62721 4.70484 4.73589 4.76346 4.83098 4.86737 4.92266 4.92384 4.93739 5.09244 5.13933 5.24413 5.27198 5.34605 5.44807 5.46937 5.53063 6.26274 6.42200 6.87260 7.23579 7.26048 7.32799 8.09570 8.32201 9.28767 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.002468 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.072952 B =11343.057002 C =11541.038181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 C -0.018 4.018 4 H 0.121 0.879 5 C 0.523 3.477 6 O -0.548 6.548 7 N -0.608 5.608 8 C 0.068 3.932 9 C 0.097 3.903 10 C 0.100 3.900 11 H 0.087 0.913 12 O -0.561 6.561 13 C 0.123 3.877 14 N -0.741 5.741 15 C -0.246 4.246 16 H 0.077 0.923 17 C -0.078 4.078 18 N -0.969 5.969 19 Si 0.975 3.025 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.294 1.294 23 C -0.201 4.201 24 C 0.036 3.964 25 C -0.083 4.083 26 N -0.395 5.395 27 O 0.078 5.922 28 C -0.012 4.012 29 C -0.090 4.090 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.376 0.624 41 H 0.037 0.963 42 H 0.022 0.978 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.694 -9.457 -15.457 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.139 4.139 3 C -0.040 4.040 4 H 0.138 0.862 5 C 0.311 3.689 6 O -0.426 6.426 7 N -0.340 5.340 8 C -0.074 4.074 9 C -0.027 4.027 10 C 0.039 3.961 11 H 0.105 0.895 12 O -0.366 6.366 13 C -0.005 4.005 14 N -0.383 5.383 15 C -0.378 4.378 16 H 0.095 0.905 17 C -0.270 4.270 18 N -0.620 5.620 19 Si 0.804 3.196 20 H -0.189 1.189 21 H -0.219 1.219 22 H -0.221 1.221 23 C -0.206 4.206 24 C -0.123 4.123 25 C -0.140 4.140 26 N -0.106 5.106 27 O 0.018 5.982 28 C -0.076 4.076 29 C -0.147 4.147 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.223 0.777 41 H 0.055 0.945 42 H 0.040 0.960 43 H 0.207 0.793 44 H 0.059 0.941 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.119 0.881 48 H 0.123 0.877 49 H 0.110 0.890 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 21.485 -9.194 -15.881 28.255 hybrid contribution -1.296 0.234 1.346 1.883 sum 20.189 -8.961 -14.536 26.442 Atomic orbital electron populations 1.21766 0.95271 1.02323 1.01603 1.21428 0.96034 0.93109 1.03286 1.19655 0.88915 0.98922 0.96480 0.86153 1.20651 0.75955 0.81945 0.90311 1.90603 1.49194 1.63606 1.39246 1.47776 1.70370 1.05985 1.09887 1.22121 1.02089 0.96609 0.86559 1.22046 0.94814 0.99501 0.86313 1.22351 0.92596 0.84222 0.96918 0.89467 1.86523 1.67569 1.28210 1.54323 1.21448 0.85301 0.97701 0.96021 1.42461 1.02120 1.66384 1.27366 1.19691 0.91051 1.26206 1.00815 0.90525 1.25626 0.96437 1.03162 1.01786 1.69862 1.01862 1.52288 1.37973 0.85045 0.78156 0.77499 0.78868 1.18868 1.21883 1.22148 1.20446 0.95935 1.06648 0.97531 1.23904 0.88218 1.00432 0.99794 1.20448 1.02526 0.99512 0.91564 1.73859 1.21699 1.13519 1.01483 1.84790 1.30834 1.53779 1.28785 1.24714 0.83911 1.00139 0.98808 1.20744 1.04676 0.99897 0.89414 0.94166 0.92187 0.91679 0.89838 0.91140 0.91619 0.89610 0.89693 0.87473 0.90190 0.77657 0.94512 0.95987 0.79339 0.94051 0.88442 0.89983 0.88053 0.87729 0.88967 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.62 71.98 0.69 -2.27 16 2 C -0.10 -1.71 4.90 30.60 0.15 -1.56 16 3 C -0.02 -0.31 1.78 -12.28 -0.02 -0.33 16 4 H 0.12 1.56 5.45 -2.39 -0.01 1.55 16 5 C 0.52 11.74 5.23 87.66 0.46 12.20 16 6 O -0.55 -15.25 11.20 9.31 0.10 -15.15 16 7 N -0.61 -12.56 2.86 -846.75 -2.42 -14.97 16 8 C 0.07 0.93 10.02 127.77 1.28 2.21 16 9 C 0.10 2.27 5.08 86.38 0.44 2.71 16 10 C 0.10 3.15 3.30 30.59 0.10 3.25 16 11 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 12 O -0.56 -20.54 11.81 -136.66 -1.61 -22.16 16 13 C 0.12 4.75 5.92 86.38 0.51 5.26 16 14 N -0.74 -38.43 5.49 -343.46 -1.89 -40.32 16 15 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 16 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 17 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 18 N -0.97 -60.85 13.06 21.65 0.28 -60.56 16 19 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 23 C -0.20 -3.51 4.86 -19.73 -0.10 -3.61 16 24 C 0.04 0.61 7.33 43.58 0.32 0.93 16 25 C -0.08 -0.79 10.26 71.24 0.73 -0.06 16 26 N -0.40 -8.69 12.07 -49.55 -0.60 -9.29 16 27 O 0.08 1.69 11.20 71.62 0.80 2.49 16 28 C -0.01 -0.23 7.34 25.04 0.18 -0.05 16 29 C -0.09 -1.41 9.05 71.24 0.64 -0.76 16 30 H 0.04 1.05 6.94 -2.39 -0.02 1.03 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.33 6.27 -2.39 -0.01 1.31 16 35 H 0.07 0.76 7.94 -2.39 -0.02 0.75 16 36 H 0.09 0.89 6.23 -2.39 -0.01 0.87 16 37 H 0.08 1.07 8.03 -2.39 -0.02 1.05 16 38 H 0.11 2.01 8.07 -2.39 -0.02 1.99 16 39 H 0.08 2.00 7.50 -2.39 -0.02 1.98 16 40 H 0.38 13.10 8.63 -74.06 -0.64 12.46 16 41 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.37 21.32 7.54 -92.71 -0.70 20.62 16 44 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.10 0.67 7.94 -2.39 -0.02 0.65 16 46 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.10 0.58 7.55 -2.39 -0.02 0.56 16 48 H 0.10 1.27 8.12 -2.39 -0.02 1.25 16 49 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.10 1.93 4.88 -2.39 -0.01 1.91 16 Total: -1.00 -74.49 401.11 3.03 -71.46 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: -0.37 Total: 39.07 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 6.70 Total: 0.75 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -4.62 Total: -125.14 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.71 Total: -34.81 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -74.49 3.03 -71.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278815955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.290 kcal (2) G-P(sol) polarization free energy of solvation -74.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds