Wall clock time and date at job start Tue Mar 31 2020 23:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47367 * 2 1 4 4 H 1.08994 * 109.47081 * 305.20836 * 3 2 1 5 5 C 1.50692 * 109.47339 * 185.20377 * 3 2 1 6 6 O 1.21283 * 120.00260 * 258.20272 * 5 3 2 7 7 N 1.34781 * 119.99771 * 78.20429 * 5 3 2 8 8 C 1.46496 * 120.00153 * 3.33029 * 7 5 3 9 9 C 1.46505 * 119.99921 * 183.32955 * 7 5 3 10 10 C 1.53006 * 109.46696 * 90.00095 * 9 7 5 11 11 H 1.09000 * 109.46992 * 304.99769 * 10 9 7 12 12 O 1.42895 * 109.47346 * 65.00196 * 10 9 7 13 13 C 1.53008 * 109.46752 * 185.00066 * 10 9 7 14 14 N 1.46499 * 109.46869 * 179.97438 * 13 10 9 15 15 C 1.36933 * 119.99693 * 179.97438 * 14 13 10 16 16 H 1.08002 * 120.00457 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99600 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99679 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48490 * 109.47293 * 90.00068 * 19 17 15 21 21 H 1.48501 * 109.47291 * 210.00399 * 19 17 15 22 22 H 1.48508 * 109.46802 * 330.00128 * 19 17 15 23 23 C 1.50703 * 109.46936 * 65.20571 * 3 2 1 24 24 C 1.41378 * 128.01079 * 60.25447 * 23 3 2 25 25 C 1.50703 * 126.79795 * 359.76531 * 24 23 3 26 26 N 1.30170 * 106.40114 * 179.73647 * 24 23 3 27 27 O 1.20925 * 111.60331 * 0.02562 * 26 24 23 28 28 C 1.34045 * 111.56417 * 359.97438 * 27 26 24 29 29 C 1.50705 * 126.77318 * 180.02562 * 28 27 26 30 30 H 1.09009 * 109.47105 * 300.00069 * 1 2 3 31 31 H 1.08997 * 109.47706 * 59.99859 * 1 2 3 32 32 H 1.08999 * 109.47332 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47497 * 240.00047 * 2 1 3 34 34 H 1.09003 * 109.47266 * 119.99598 * 2 1 3 35 35 H 1.09005 * 109.47201 * 84.71310 * 8 7 5 36 36 H 1.09000 * 109.47517 * 204.71461 * 8 7 5 37 37 H 1.09004 * 109.46947 * 324.71350 * 8 7 5 38 38 H 1.08994 * 109.47401 * 209.99729 * 9 7 5 39 39 H 1.08995 * 109.47070 * 330.00382 * 9 7 5 40 40 H 0.96699 * 114.00140 * 59.99112 * 12 10 9 41 41 H 1.08998 * 109.46798 * 300.00039 * 13 10 9 42 42 H 1.09000 * 109.47136 * 59.99888 * 13 10 9 43 43 H 0.97000 * 119.99827 * 359.97438 * 14 13 10 44 44 H 0.96996 * 119.99307 * 179.97438 * 18 17 15 45 45 H 1.08998 * 109.47797 * 95.47132 * 25 24 23 46 46 H 1.09005 * 109.46730 * 215.47270 * 25 24 23 47 47 H 1.08997 * 109.47202 * 335.46525 * 25 24 23 48 48 H 1.09000 * 109.46683 * 274.39350 * 29 28 27 49 49 H 1.08998 * 109.47140 * 34.39242 * 29 28 27 50 50 H 1.08999 * 109.47057 * 154.39977 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6025 1.9825 -0.8396 5 6 3.5414 1.4445 -0.1289 6 8 4.2338 1.6288 0.8497 7 7 4.1148 1.2414 -1.3316 8 6 3.2792 1.0915 -2.5255 9 6 5.5737 1.1705 -1.4450 10 6 6.0290 -0.2796 -1.2688 11 1 5.6471 -0.6682 -0.3248 12 8 5.5272 -1.0709 -2.3476 13 6 7.5580 -0.3368 -1.2626 14 7 7.9940 -1.7251 -1.0933 15 6 9.3299 -2.0237 -1.0580 16 1 10.0622 -1.2357 -1.1546 17 6 9.7430 -3.3393 -0.8981 18 7 11.0272 -3.6263 -0.8637 19 14 8.4766 -4.7021 -0.7304 20 1 8.1393 -5.2328 -2.0756 21 1 9.0332 -5.7947 0.1075 22 1 7.2506 -4.1624 -0.0894 23 6 1.6457 2.1147 1.2899 24 6 1.9991 1.7449 2.6079 25 6 2.8573 0.5759 3.0180 26 7 1.4370 2.6143 3.3969 27 8 0.8084 3.4390 2.7747 28 6 0.8752 3.2165 1.4546 29 6 0.2221 4.0315 0.3681 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0314 2.0764 -2.9216 36 1 3.8223 0.5225 -3.2801 37 1 2.3620 0.5641 -2.2632 38 1 5.8798 1.5306 -2.4271 39 1 6.0287 1.7906 -0.6726 40 1 5.8270 -0.7816 -3.2203 41 1 7.9399 0.0519 -2.2066 42 1 7.9409 0.2668 -0.4397 43 1 7.3363 -2.4328 -1.0062 44 1 11.3158 -4.5455 -0.7517 45 1 3.8859 0.9101 3.1537 46 1 2.4834 0.1616 3.9544 47 1 2.8232 -0.1896 2.2428 48 1 -0.8001 3.6842 0.2182 49 1 0.2100 5.0818 0.6593 50 1 0.7841 3.9178 -0.5589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278815956.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:55 Heat of formation + Delta-G solvation = -42.645842 kcal Electronic energy + Delta-G solvation = -31132.899532 eV Core-core repulsion = 26969.973578 eV Total energy + Delta-G solvation = -4162.925954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -45.94685 -41.31278 -39.04830 -37.16130 -36.51315 -35.87550 -34.82172 -33.78249 -33.50182 -31.40232 -29.89517 -29.42685 -28.25199 -27.86669 -26.54909 -24.38757 -23.79411 -22.84180 -22.24814 -21.13446 -20.17927 -19.83360 -18.74924 -18.18234 -17.96727 -17.49262 -17.04408 -16.58874 -16.40242 -16.38629 -15.89337 -15.44966 -15.21076 -14.96938 -14.79595 -14.47163 -14.31921 -14.21951 -13.99490 -13.87629 -13.82018 -13.74185 -13.63189 -13.30284 -13.26897 -13.19207 -13.04925 -12.87855 -12.83269 -12.54725 -12.29499 -12.22557 -11.96653 -11.88408 -11.87264 -11.56870 -11.22681 -11.04931 -10.89895 -10.65818 -10.04466 -9.51799 -9.34433 -8.06784 -5.39933 0.51263 1.17758 1.36050 1.38202 1.46035 1.58013 2.03728 2.27115 2.45093 3.18906 3.24053 3.34407 3.45029 3.54061 3.67356 3.74823 3.86584 3.98220 4.06540 4.11966 4.20797 4.25105 4.36037 4.40684 4.44535 4.51929 4.55666 4.61420 4.71274 4.73415 4.75597 4.77746 4.82368 4.85212 4.89566 4.94282 5.00848 5.08868 5.15094 5.18989 5.25729 5.28405 5.43274 5.53941 5.70410 6.17331 6.40086 6.86610 7.04516 7.18752 7.35322 7.80552 7.99217 9.14672 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.002768 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.791722 B =10114.723992 C =10476.660010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C -0.013 4.013 4 H 0.140 0.860 5 C 0.507 3.493 6 O -0.572 6.572 7 N -0.602 5.602 8 C 0.065 3.935 9 C 0.096 3.904 10 C 0.105 3.895 11 H 0.070 0.930 12 O -0.559 6.559 13 C 0.125 3.875 14 N -0.754 5.754 15 C -0.237 4.237 16 H 0.058 0.942 17 C -0.062 4.062 18 N -0.982 5.982 19 Si 0.958 3.042 20 H -0.273 1.273 21 H -0.295 1.295 22 H -0.263 1.263 23 C -0.194 4.194 24 C 0.037 3.963 25 C -0.067 4.067 26 N -0.408 5.408 27 O 0.084 5.916 28 C -0.020 4.020 29 C -0.074 4.074 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.387 0.613 41 H 0.046 0.954 42 H 0.023 0.977 43 H 0.367 0.633 44 H 0.259 0.741 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.113 0.887 49 H 0.095 0.905 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.951 15.749 -6.395 35.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.034 4.034 4 H 0.158 0.842 5 C 0.295 3.705 6 O -0.450 6.450 7 N -0.334 5.334 8 C -0.077 4.077 9 C -0.028 4.028 10 C 0.044 3.956 11 H 0.088 0.912 12 O -0.366 6.366 13 C -0.003 4.003 14 N -0.400 5.400 15 C -0.368 4.368 16 H 0.076 0.924 17 C -0.254 4.254 18 N -0.633 5.633 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.221 1.221 22 H -0.188 1.188 23 C -0.198 4.198 24 C -0.122 4.122 25 C -0.124 4.124 26 N -0.117 5.117 27 O 0.022 5.978 28 C -0.084 4.084 29 C -0.131 4.131 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.093 0.907 40 H 0.237 0.763 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.200 0.800 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.131 0.869 49 H 0.114 0.886 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -30.702 15.784 -4.109 34.765 hybrid contribution 0.926 -1.081 -0.290 1.453 sum -29.776 14.703 -4.399 33.498 Atomic orbital electron populations 1.21701 0.92952 1.02570 1.02595 1.21650 0.98213 0.92552 1.03149 1.19650 0.90598 0.98706 0.94488 0.84228 1.21051 0.91160 0.75661 0.82626 1.90722 1.65687 1.50158 1.38482 1.47769 1.06456 1.70846 1.08320 1.22266 0.95830 1.03250 0.86324 1.21994 0.80805 0.95378 1.04661 1.22196 0.91193 0.91699 0.90542 0.91151 1.86546 1.73854 1.58438 1.17781 1.21434 0.94076 0.85545 0.99205 1.42589 1.03026 1.04772 1.89568 1.19058 0.83674 0.93224 1.40796 0.92396 1.25493 0.97703 0.99704 1.02502 1.69883 1.15194 1.19194 1.59001 0.85364 0.78943 0.78988 0.78147 1.19865 1.22146 1.18781 1.20475 1.04782 0.99501 0.95062 1.23537 0.99220 0.98472 0.90930 1.20155 0.97414 0.92946 1.01894 1.73808 1.12588 1.03498 1.21790 1.84745 1.53955 1.41714 1.17343 1.25015 1.00106 0.97217 0.86056 1.20652 1.01714 0.99009 0.91746 0.93987 0.89726 0.91901 0.89263 0.92994 0.90109 0.89335 0.89553 0.86595 0.90683 0.76346 0.93654 0.95897 0.79977 0.93230 0.91485 0.90883 0.90017 0.86893 0.88632 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.73 71.98 0.70 -0.69 16 2 C -0.12 -1.66 5.00 30.59 0.15 -1.51 16 3 C -0.01 -0.20 1.62 -12.29 -0.02 -0.22 16 4 H 0.14 0.99 6.13 -2.39 -0.01 0.98 16 5 C 0.51 11.25 6.81 87.65 0.60 11.85 16 6 O -0.57 -18.27 13.09 -3.04 -0.04 -18.31 16 7 N -0.60 -10.54 2.84 -846.75 -2.40 -12.94 16 8 C 0.06 0.53 9.56 127.77 1.22 1.75 16 9 C 0.10 2.02 5.07 86.38 0.44 2.46 16 10 C 0.10 2.97 3.30 30.60 0.10 3.07 16 11 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 12 O -0.56 -14.14 12.01 -148.98 -1.79 -15.93 16 13 C 0.12 4.61 5.92 86.38 0.51 5.12 16 14 N -0.75 -36.23 5.30 -343.44 -1.82 -38.05 16 15 C -0.24 -13.85 10.47 84.03 0.88 -12.97 16 16 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 17 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 18 N -0.98 -64.06 13.97 21.65 0.30 -63.75 16 19 Si 0.96 47.31 27.74 68.60 1.90 49.22 16 20 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 22 H -0.26 -12.20 6.52 99.48 0.65 -11.55 16 23 C -0.19 -3.94 3.65 -19.74 -0.07 -4.01 16 24 C 0.04 0.99 6.68 43.58 0.29 1.28 16 25 C -0.07 -1.81 8.85 71.24 0.63 -1.18 16 26 N -0.41 -11.78 12.07 -49.56 -0.60 -12.38 16 27 O 0.08 2.00 11.20 71.58 0.80 2.80 16 28 C -0.02 -0.34 7.49 25.04 0.19 -0.15 16 29 C -0.07 -0.38 10.24 71.24 0.73 0.35 16 30 H 0.04 0.54 7.39 -2.38 -0.02 0.52 16 31 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 1.09 6.38 -2.39 -0.02 1.07 16 34 H 0.05 1.00 5.35 -2.39 -0.01 0.98 16 35 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 36 H 0.09 0.65 7.22 -2.39 -0.02 0.64 16 37 H 0.09 0.49 4.99 -2.39 -0.01 0.48 16 38 H 0.12 1.67 8.07 -2.39 -0.02 1.66 16 39 H 0.07 1.94 7.38 -2.39 -0.02 1.92 16 40 H 0.39 6.84 9.04 -74.06 -0.67 6.17 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.37 17.42 5.41 -92.71 -0.50 16.92 16 44 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 45 H 0.07 2.10 7.54 -2.39 -0.02 2.08 16 46 H 0.07 1.79 8.14 -2.38 -0.02 1.78 16 47 H 0.08 2.08 5.42 -2.39 -0.01 2.07 16 48 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 49 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.11 0.16 7.21 -2.39 -0.02 0.14 16 Total: -1.00 -85.29 396.01 2.92 -82.37 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.25 Total: 25.11 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 6.81 Total: 1.86 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -4.52 Total: -127.12 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.03 Total: -31.43 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.90 Total: 49.22 kcal Total: -85.29 2.92 -82.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278815956.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.722 kcal (2) G-P(sol) polarization free energy of solvation -85.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds