Wall clock time and date at job start Tue Mar 31 2020 22:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47528 * 2 1 4 4 C 1.52998 * 109.47402 * 120.00442 * 2 1 3 5 5 H 1.09006 * 109.46892 * 294.35834 * 4 2 1 6 6 O 1.42901 * 109.47424 * 54.35820 * 4 2 1 7 7 C 1.50703 * 109.47298 * 174.36091 * 4 2 1 8 8 O 1.21283 * 119.99491 * 267.21476 * 7 4 2 9 9 N 1.34774 * 120.00076 * 87.21440 * 7 4 2 10 10 C 1.48315 * 128.20256 * 5.10441 * 9 7 4 11 11 C 1.54004 * 104.57145 * 221.86236 * 10 9 7 12 12 H 1.09000 * 112.89023 * 97.90875 * 11 10 9 13 13 C 1.55907 * 108.94628 * 224.41933 * 11 10 9 14 14 N 1.48724 * 104.36504 * 136.69307 * 13 11 10 15 15 C 1.46904 * 111.00321 * 198.76223 * 14 13 11 16 16 C 1.50700 * 109.46778 * 284.53048 * 15 14 13 17 17 O 1.21287 * 120.00308 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99540 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99893 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99752 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00319 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99625 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00339 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46912 * 59.99747 * 23 21 19 25 25 H 1.48493 * 109.47048 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46959 * 300.00025 * 23 21 19 27 27 C 1.48735 * 103.49705 * 317.90015 * 14 13 11 28 28 C 1.54403 * 104.34804 * 41.80053 * 27 14 13 29 29 H 1.08997 * 112.56954 * 98.12738 * 28 27 14 30 30 C 1.48321 * 128.20262 * 185.41674 * 9 7 4 31 31 H 1.09002 * 109.46870 * 300.00078 * 1 2 3 32 32 H 1.09005 * 109.47566 * 59.99518 * 1 2 3 33 33 H 1.08999 * 109.47248 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46870 * 239.99922 * 2 1 3 35 35 H 1.09003 * 109.47809 * 175.79667 * 3 2 1 36 36 H 1.09006 * 109.47226 * 295.79325 * 3 2 1 37 37 H 1.09004 * 109.47248 * 55.79239 * 3 2 1 38 38 H 0.96700 * 113.99816 * 60.00006 * 6 4 2 39 39 H 1.09004 * 110.45221 * 340.61601 * 10 9 7 40 40 H 1.08996 * 110.46049 * 103.17978 * 10 9 7 41 41 H 1.09005 * 110.70804 * 17.84648 * 13 11 10 42 42 H 1.09001 * 110.30317 * 255.34447 * 13 11 10 43 43 H 1.08997 * 109.46883 * 44.52479 * 15 14 13 44 44 H 1.09001 * 109.47384 * 164.52925 * 15 14 13 45 45 H 0.96996 * 120.00447 * 0.02562 * 18 16 15 46 46 H 0.97004 * 119.99763 * 180.02562 * 22 21 19 47 47 H 1.08996 * 110.45618 * 283.08177 * 27 14 13 48 48 H 1.08999 * 110.56127 * 160.57197 * 27 14 13 49 49 H 1.09005 * 110.44917 * 256.81733 * 30 9 7 50 50 H 1.08994 * 110.45116 * 19.24480 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.7615 -0.1525 2.1363 6 8 1.4587 -2.0250 1.3172 7 6 3.5405 -0.8434 1.1813 8 8 4.0471 -1.8379 0.7067 9 7 4.3194 0.1526 1.6480 10 6 3.9028 1.3899 2.3518 11 6 4.7775 2.4984 1.7373 12 1 4.2647 3.0586 0.9555 13 6 5.3231 3.4056 2.8819 14 7 6.7506 3.6273 2.5284 15 6 7.5187 4.0775 3.6969 16 6 7.2043 5.5244 3.9775 17 8 6.4183 6.1219 3.2731 18 7 7.7967 6.1544 5.0113 19 6 7.5112 7.4708 5.2663 20 1 6.8119 8.0031 4.6385 21 6 8.1223 8.1206 6.3317 22 7 8.9736 7.4731 7.0952 23 14 7.7338 9.9145 6.6787 24 1 6.2820 10.0624 6.9534 25 1 8.5105 10.3697 7.8597 26 1 8.1007 10.7377 5.4984 27 6 7.2079 2.2868 2.0742 28 6 6.0408 1.7555 1.2142 29 1 6.2054 1.9052 0.1472 30 6 5.7958 0.2740 1.5739 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5139 -0.8900 35 1 3.1274 1.4434 0.0753 36 1 1.7396 1.9341 -0.9253 37 1 1.6165 1.9776 0.8499 38 1 1.6651 -2.5878 0.5585 39 1 2.8476 1.5944 2.1703 40 1 4.0967 1.3037 3.4209 41 1 5.2430 2.9012 3.8449 42 1 4.7843 4.3529 2.9030 43 1 7.2501 3.4728 4.5631 44 1 8.5843 3.9697 3.4948 45 1 8.4256 5.6767 5.5744 46 1 9.3999 7.9265 7.8392 47 1 7.3796 1.6330 2.9292 48 1 8.1140 2.3743 1.4746 49 1 6.2463 0.0364 2.5377 50 1 6.1932 -0.3794 0.7973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279363403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:25 Heat of formation + Delta-G solvation = -104.739857 kcal Electronic energy + Delta-G solvation = -30494.174306 eV Core-core repulsion = 26328.555754 eV Total energy + Delta-G solvation = -4165.618552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.08963 -39.57537 -38.09646 -37.23979 -35.92941 -34.55282 -33.88146 -31.81137 -31.17827 -30.78648 -28.35327 -27.52205 -26.69778 -25.94625 -24.74218 -23.51415 -21.51967 -21.29285 -19.94188 -19.76070 -19.07475 -17.96278 -17.84604 -17.26728 -16.44229 -16.10771 -15.85435 -15.56368 -15.23590 -14.88566 -14.72107 -14.48740 -14.26217 -13.97311 -13.74506 -13.50079 -13.25931 -13.15319 -12.93043 -12.77535 -12.66929 -12.36614 -12.22395 -11.99143 -11.95664 -11.65620 -11.53344 -11.45981 -11.38138 -11.30026 -11.12834 -11.02210 -10.92474 -10.75351 -10.68946 -10.45724 -10.22813 -9.79793 -9.50021 -9.09005 -8.57706 -8.07871 -7.97037 -6.43010 -3.83889 2.18651 2.52759 3.18617 3.24581 3.28621 3.86884 3.88629 3.91878 3.98201 4.16060 4.22356 4.30712 4.37235 4.46195 4.64700 4.76735 4.81997 4.94404 4.97495 5.02272 5.06839 5.13279 5.20923 5.22941 5.25428 5.28947 5.46169 5.46794 5.50233 5.52318 5.55002 5.65870 5.67254 5.74006 5.78595 5.82433 5.85603 5.88656 5.99539 6.09921 6.24171 6.26820 6.97512 7.06681 7.12378 7.21167 7.53501 7.74412 8.04419 8.60429 9.16803 9.53098 10.04995 10.74713 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.002156 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.361644 B =12982.851835 C =13627.492417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C -0.164 4.164 4 C 0.100 3.900 5 H 0.118 0.882 6 O -0.539 6.539 7 C 0.512 3.488 8 O -0.542 6.542 9 N -0.618 5.618 10 C 0.093 3.907 11 C -0.100 4.100 12 H 0.102 0.898 13 C 0.043 3.957 14 N -0.479 5.479 15 C 0.033 3.967 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.034 3.966 28 C -0.100 4.100 29 H 0.097 0.903 30 C 0.107 3.893 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.384 0.616 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.098 0.902 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.046 0.954 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 -16.455 -10.912 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 C -0.221 4.221 4 C 0.037 3.963 5 H 0.136 0.864 6 O -0.344 6.344 7 C 0.301 3.699 8 O -0.419 6.419 9 N -0.353 5.353 10 C -0.030 4.030 11 C -0.120 4.120 12 H 0.120 0.880 13 C -0.086 4.086 14 N -0.202 5.202 15 C -0.099 4.099 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.203 5.203 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.095 4.095 28 C -0.120 4.120 29 H 0.116 0.884 30 C -0.016 4.016 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.612 -15.977 -11.342 22.776 hybrid contribution 0.652 -0.097 0.885 1.104 sum -10.960 -16.074 -10.457 22.087 Atomic orbital electron populations 1.21747 0.93319 1.02617 1.02148 1.21711 0.97636 0.97322 0.97191 1.22186 1.02260 0.94728 1.02888 1.21947 0.87739 0.85945 1.00666 0.86391 1.86592 1.73849 1.24252 1.49685 1.21241 0.89953 0.81622 0.77107 1.90707 1.75559 1.29389 1.46254 1.49234 1.07990 1.20858 1.57216 1.22880 1.00407 0.83005 0.96713 1.23192 0.95267 0.95125 0.98441 0.87992 1.23584 0.90280 1.00155 0.94547 1.65438 1.01887 1.22215 1.30685 1.22066 0.99267 0.96484 0.92068 1.19679 0.85722 0.87864 0.83711 1.90508 1.38168 1.67428 1.49958 1.41863 1.40022 1.11732 1.26645 1.19634 1.24469 0.86440 1.12270 0.87994 1.25256 0.96276 1.00360 0.96068 1.69603 1.28673 1.37665 1.18456 0.85924 0.78503 0.82017 0.77818 1.19926 1.21000 1.19893 1.23326 0.97797 0.90447 0.97903 1.22940 0.95027 0.93108 1.00898 0.88433 1.22637 0.80257 0.96468 1.02235 0.92266 0.92222 0.91813 0.90377 0.91243 0.91661 0.91694 0.76671 0.89357 0.90256 0.93851 0.88327 0.93112 0.89253 0.77538 0.91833 0.93545 0.89783 0.90675 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.99 37.15 0.33 -0.53 16 2 C -0.12 -0.83 2.66 -90.63 -0.24 -1.07 16 3 C -0.16 -1.10 7.69 37.16 0.29 -0.81 16 4 C 0.10 0.85 2.62 -27.88 -0.07 0.78 16 5 H 0.12 0.90 6.98 -51.93 -0.36 0.54 16 6 O -0.54 -5.05 12.28 -53.48 -0.66 -5.71 16 7 C 0.51 5.64 6.56 -10.98 -0.07 5.57 16 8 O -0.54 -7.79 16.72 -12.70 -0.21 -8.00 16 9 N -0.62 -6.02 2.63 -169.24 -0.44 -6.46 16 10 C 0.09 0.78 5.20 -2.52 -0.01 0.76 16 11 C -0.10 -1.00 3.60 -87.15 -0.31 -1.31 16 12 H 0.10 1.00 7.63 -51.93 -0.40 0.60 16 13 C 0.04 0.57 5.50 -1.26 -0.01 0.56 16 14 N -0.48 -7.25 4.99 -230.08 -1.15 -8.40 16 15 C 0.03 0.55 5.34 -4.97 -0.03 0.53 16 16 C 0.45 10.14 7.64 -10.98 -0.08 10.05 16 17 O -0.58 -15.07 14.85 5.55 0.08 -14.98 16 18 N -0.57 -14.00 5.29 -10.96 -0.06 -14.05 16 19 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 20 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 23 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.03 0.38 5.95 -2.07 -0.01 0.36 16 28 C -0.10 -0.97 4.13 -87.75 -0.36 -1.33 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 C 0.11 1.02 6.57 -2.30 -0.02 1.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.40 7.54 -51.93 -0.39 0.01 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.54 4.43 -51.93 -0.23 0.31 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.39 6.93 -51.93 -0.36 0.03 16 38 H 0.38 2.84 8.63 45.56 0.39 3.24 16 39 H 0.09 0.60 4.32 -51.93 -0.22 0.37 16 40 H 0.08 0.66 7.19 -51.93 -0.37 0.29 16 41 H 0.04 0.55 6.86 -51.93 -0.36 0.19 16 42 H 0.10 1.61 7.25 -51.93 -0.38 1.23 16 43 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 44 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 45 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.05 0.47 7.05 -51.93 -0.37 0.11 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.08 0.70 7.18 -51.93 -0.37 0.32 16 50 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 LS Contribution 386.28 15.07 5.82 5.82 Total: -1.00 -33.15 386.28 -8.78 -41.93 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.02 Total: 10.90 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.84 Total: 6.73 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.93 Total: -52.43 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.79 Total: -28.69 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.15 -8.78 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279363403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.815 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds