Wall clock time and date at job start Tue Mar 31 2020 23:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46992 * 2 1 4 4 H 1.08995 * 110.43386 * 52.45686 * 3 2 1 5 5 C 1.54812 * 110.48912 * 289.76807 * 3 2 1 6 6 C 1.54992 * 102.09147 * 220.44278 * 5 3 2 7 7 O 1.44382 * 103.49196 * 37.02257 * 6 5 3 8 8 C 1.43745 * 106.97554 * 319.94041 * 7 6 5 9 9 H 1.08994 * 109.87723 * 266.93471 * 8 7 6 10 10 C 1.50701 * 109.87786 * 145.93673 * 8 7 6 11 11 O 1.21284 * 119.99788 * 356.44884 * 10 8 7 12 12 N 1.34780 * 120.00154 * 176.45602 * 10 8 7 13 13 C 1.46490 * 120.00083 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.47240 * 179.97438 * 13 12 10 15 15 C 1.53937 * 113.72887 * 273.76846 * 14 13 12 16 16 N 1.48195 * 86.09805 * 221.95374 * 15 14 13 17 17 C 1.46898 * 111.06967 * 137.51882 * 16 15 14 18 18 C 1.50702 * 109.47161 * 70.57108 * 17 16 15 19 19 O 1.21293 * 119.99841 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00044 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99907 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99777 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00129 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99606 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00149 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46978 * 60.00491 * 25 23 21 27 27 H 1.48496 * 109.47095 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47139 * 300.00373 * 25 23 21 29 29 C 1.47957 * 90.79726 * 24.59877 * 16 15 14 30 30 H 1.09001 * 109.47188 * 299.99685 * 1 2 3 31 31 H 1.08999 * 109.47470 * 59.99969 * 1 2 3 32 32 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47188 * 240.00315 * 2 1 3 34 34 H 1.08997 * 109.47306 * 120.00550 * 2 1 3 35 35 H 1.08996 * 110.90812 * 338.64311 * 5 3 2 36 36 H 1.08998 * 110.90412 * 102.21130 * 5 3 2 37 37 H 1.09005 * 110.61954 * 278.52638 * 6 5 3 38 38 H 1.08999 * 110.62033 * 155.52254 * 6 5 3 39 39 H 0.97003 * 119.99066 * 359.97438 * 12 10 8 40 40 H 1.09006 * 109.47609 * 299.99446 * 13 12 10 41 41 H 1.08996 * 109.47643 * 59.99453 * 13 12 10 42 42 H 1.08997 * 112.93599 * 45.32765 * 14 13 12 43 43 H 1.08999 * 113.75713 * 336.23025 * 15 14 13 44 44 H 1.09000 * 113.76398 * 107.60327 * 15 14 13 45 45 H 1.09004 * 109.46989 * 190.56214 * 17 16 15 46 46 H 1.08998 * 109.47779 * 310.56594 * 17 16 15 47 47 H 0.96995 * 119.99814 * 359.97438 * 20 18 17 48 48 H 0.97003 * 120.00086 * 179.97438 * 24 23 21 49 49 H 1.08997 * 113.75994 * 221.08315 * 29 16 15 50 50 H 1.09002 * 113.76167 * 89.72277 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5800 2.0088 0.8098 5 6 1.7581 2.1169 -1.3647 6 6 3.0602 2.9231 -1.6035 7 8 4.0919 2.0594 -1.0801 8 6 3.5755 1.4717 0.1258 9 1 3.8678 2.0737 0.9861 10 6 4.1039 0.0687 0.2792 11 8 4.7988 -0.4158 -0.5888 12 7 3.8042 -0.6476 1.3808 13 6 4.3173 -2.0116 1.5296 14 6 3.8343 -2.5961 2.8586 15 6 4.7424 -2.2522 4.0531 16 7 4.5483 -3.6592 4.4758 17 6 5.8105 -4.2501 4.9399 18 6 6.1991 -3.6332 6.2588 19 8 5.4940 -2.7843 6.7624 20 7 7.3300 -4.0246 6.8788 21 6 7.6837 -3.4629 8.0784 22 1 7.0559 -2.7071 8.5267 23 6 8.8493 -3.8669 8.7178 24 7 9.6128 -4.7869 8.1725 25 14 9.3309 -3.1021 10.3526 26 1 8.2647 -3.3608 11.3533 27 1 10.6066 -3.6999 10.8221 28 1 9.5045 -1.6372 10.1818 29 6 4.2563 -4.0595 3.0817 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6144 1.3700 -2.1454 36 1 0.8956 2.7802 -1.3000 37 1 3.0341 3.8653 -1.0560 38 1 3.2119 3.1007 -2.6682 39 1 3.2486 -0.2599 2.0751 40 1 3.9538 -2.6284 0.7076 41 1 5.4070 -1.9934 1.5158 42 1 2.7763 -2.4114 3.0443 43 1 5.7684 -2.0160 3.7710 44 1 4.3098 -1.5230 4.7380 45 1 5.6838 -5.3255 5.0653 46 1 6.5928 -4.0597 4.2052 47 1 7.8935 -4.7037 6.4763 48 1 10.4268 -5.0687 8.6187 49 1 3.4361 -4.7717 2.9919 50 1 5.1399 -4.3531 2.5149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318128123.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:35 Heat of formation + Delta-G solvation = -78.799732 kcal Electronic energy + Delta-G solvation = -29670.226741 eV Core-core repulsion = 25505.733037 eV Total energy + Delta-G solvation = -4164.493704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07606 -40.05425 -38.59046 -37.69107 -35.57885 -34.52639 -33.88879 -31.46336 -31.08775 -30.67164 -29.71212 -27.22108 -25.99332 -24.96655 -24.18421 -23.26323 -22.42905 -21.52202 -20.48043 -19.43440 -19.17764 -17.90440 -17.41505 -17.17474 -16.63556 -16.21810 -15.82041 -15.64431 -15.30742 -14.94664 -14.91142 -14.70978 -14.56509 -14.20813 -13.90542 -13.72270 -13.59475 -13.32690 -13.08387 -12.86879 -12.53233 -12.50342 -12.11850 -12.04844 -11.73206 -11.69983 -11.56983 -11.49844 -11.33535 -11.12693 -11.09722 -11.05037 -10.66038 -10.59812 -10.44846 -10.38967 -10.21497 -9.69931 -9.50077 -9.16839 -8.66420 -8.23792 -7.97057 -6.42066 -3.83045 2.38538 2.66313 3.19467 3.25288 3.29463 3.61212 3.88082 3.91604 3.97656 4.15029 4.19803 4.27132 4.42271 4.55180 4.62556 4.72653 4.74073 4.90442 4.93658 4.95431 5.00179 5.09292 5.17851 5.22495 5.27625 5.34654 5.35582 5.39683 5.41646 5.54027 5.58044 5.59692 5.65535 5.72215 5.72879 5.74833 5.83060 5.87936 6.02485 6.13963 6.25494 6.29647 6.37915 6.60491 7.17960 7.24560 7.54264 8.00133 8.04756 8.60693 9.17130 9.53483 10.05090 10.75595 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018634 B = 0.001947 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.306050 B =14376.978338 C =14917.147336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C -0.113 4.113 4 H 0.095 0.905 5 C -0.148 4.148 6 C 0.043 3.957 7 O -0.347 6.347 8 C 0.060 3.940 9 H 0.095 0.905 10 C 0.518 3.482 11 O -0.521 6.521 12 N -0.725 5.725 13 C 0.129 3.871 14 C -0.134 4.134 15 C 0.026 3.974 16 N -0.454 5.454 17 C 0.010 3.990 18 C 0.443 3.557 19 O -0.581 6.581 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.009 3.991 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.403 0.597 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.091 0.909 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.879 10.221 -19.401 27.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.132 4.132 4 H 0.113 0.887 5 C -0.186 4.186 6 C -0.034 4.034 7 O -0.265 6.265 8 C -0.001 4.001 9 H 0.113 0.887 10 C 0.304 3.696 11 O -0.395 6.395 12 N -0.380 5.380 13 C 0.005 3.995 14 C -0.153 4.153 15 C -0.103 4.103 16 N -0.176 5.176 17 C -0.122 4.122 18 C 0.229 3.771 19 O -0.465 6.465 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.121 4.121 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.239 0.761 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.109 0.891 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.865 10.137 -19.175 27.475 hybrid contribution 0.989 0.203 0.494 1.124 sum -15.877 10.340 -18.681 26.607 Atomic orbital electron populations 1.21753 0.95104 1.01998 1.01809 1.22085 0.96750 0.94786 1.03945 1.22585 0.92993 0.98411 0.99191 0.88692 1.23237 0.98607 0.99899 0.96844 1.23647 0.86238 0.93246 1.00226 1.89023 1.37660 1.61063 1.38707 1.22754 0.93803 0.92731 0.90821 0.88694 1.20299 0.80246 0.87141 0.81942 1.90732 1.36764 1.71208 1.40800 1.46142 1.54019 1.16052 1.21831 1.21445 0.99308 0.81664 0.97088 1.23344 1.01467 0.96745 0.93740 1.23904 0.98399 0.93382 0.94582 1.68435 1.28318 1.03772 1.17061 1.22460 0.91886 1.00723 0.97138 1.19684 0.83535 0.86720 0.87194 1.90510 1.53149 1.35238 1.67561 1.41869 1.20527 1.37229 1.20444 1.19639 1.06294 1.20332 0.96649 0.88007 1.25269 0.96049 0.96728 0.99929 1.69603 1.14663 1.30085 1.39936 0.85913 0.77711 0.79131 0.81434 1.19880 1.20965 1.19926 1.23951 1.01281 0.95882 0.90972 0.92510 0.92802 0.92434 0.91432 0.89733 0.90067 0.89776 0.91768 0.88525 0.76103 0.91072 0.91184 0.87717 0.91433 0.88794 0.89134 0.92792 0.77486 0.91804 0.89101 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.79 37.16 0.36 -0.44 16 2 C -0.14 -0.91 4.15 -26.73 -0.11 -1.02 16 3 C -0.11 -0.70 3.04 -89.09 -0.27 -0.97 16 4 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 5 C -0.15 -0.84 6.03 -24.72 -0.15 -0.99 16 6 C 0.04 0.30 7.72 38.21 0.29 0.59 16 7 O -0.35 -3.93 10.74 -54.80 -0.59 -4.52 16 8 C 0.06 0.55 3.84 -27.31 -0.10 0.44 16 9 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 10 C 0.52 5.96 5.66 -10.98 -0.06 5.90 16 11 O -0.52 -8.41 16.53 -14.01 -0.23 -8.64 16 12 N -0.73 -6.53 3.76 -60.30 -0.23 -6.76 16 13 C 0.13 1.28 5.51 -4.04 -0.02 1.26 16 14 C -0.13 -1.37 3.93 -89.69 -0.35 -1.72 16 15 C 0.03 0.38 6.33 -2.63 -0.02 0.36 16 16 N -0.45 -7.25 5.95 -239.52 -1.42 -8.68 16 17 C 0.01 0.18 5.31 -4.98 -0.03 0.15 16 18 C 0.44 10.50 7.59 -10.98 -0.08 10.42 16 19 O -0.58 -15.65 15.13 5.55 0.08 -15.56 16 20 N -0.56 -14.40 5.29 -10.96 -0.06 -14.45 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 25 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 29 C 0.01 0.10 7.54 -2.77 -0.02 0.08 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.27 7.63 -51.93 -0.40 -0.13 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 34 H 0.08 0.55 4.87 -51.93 -0.25 0.29 16 35 H 0.08 0.52 7.77 -51.93 -0.40 0.12 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 2.68 7.58 -40.82 -0.31 2.37 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.02 7.57 -51.93 -0.39 0.63 16 44 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.05 0.87 7.70 -51.93 -0.40 0.47 16 47 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 LS Contribution 400.38 15.07 6.03 6.03 Total: -1.00 -35.34 400.38 -9.78 -45.13 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -8.27 Total: 9.25 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.80 Total: 6.03 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.98 Total: -53.82 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.74 Total: -28.72 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.34 -9.78 -45.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318128123.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.674 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds