Wall clock time and date at job start Tue Mar 31 2020 23:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.47063 * 2 1 4 4 H 1.09004 * 109.46689 * 55.00462 * 3 2 1 5 5 C 1.53004 * 109.46689 * 174.99924 * 3 2 1 6 6 O 1.42890 * 109.47095 * 295.00159 * 3 2 1 7 7 C 1.42909 * 113.99746 * 149.99837 * 6 3 2 8 8 C 1.50696 * 109.46835 * 179.97438 * 7 6 3 9 9 O 1.21277 * 120.00796 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99514 * 180.02562 * 8 7 6 11 11 C 1.47856 * 126.93004 * 0.02562 * 10 8 7 12 12 C 1.56022 * 105.11743 * 181.91793 * 11 10 8 13 13 H 1.09000 * 116.25948 * 159.70334 * 12 11 10 14 14 C 1.57088 * 99.59546 * 32.81046 * 12 11 10 15 15 C 1.49279 * 126.92604 * 180.02562 * 10 8 7 16 16 H 1.09007 * 116.12638 * 16.01866 * 15 10 8 17 17 C 1.56009 * 104.12952 * 246.90777 * 15 10 8 18 18 N 1.48287 * 105.06679 * 288.79627 * 17 15 10 19 19 C 1.46899 * 110.99706 * 122.54482 * 18 17 15 20 20 C 1.50700 * 109.47222 * 76.51006 * 19 18 17 21 21 O 1.21288 * 120.00045 * 0.02562 * 20 19 18 22 22 N 1.34779 * 120.00158 * 179.97438 * 20 19 18 23 23 C 1.37091 * 120.00149 * 180.02562 * 22 20 19 24 24 H 1.07991 * 120.00120 * 359.97438 * 23 22 20 25 25 C 1.38955 * 120.00025 * 180.02562 * 23 22 20 26 26 N 1.31414 * 119.99999 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00060 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47255 * 59.99848 * 27 25 23 29 29 H 1.48494 * 109.47190 * 180.02562 * 27 25 23 30 30 H 1.48505 * 109.47030 * 300.00175 * 27 25 23 31 31 H 1.08998 * 109.46862 * 59.99434 * 1 2 3 32 32 H 1.08997 * 109.46761 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46884 * 299.99561 * 1 2 3 34 34 H 1.08998 * 109.46884 * 240.00439 * 2 1 3 35 35 H 1.08995 * 109.47338 * 120.00389 * 2 1 3 36 36 H 1.08996 * 109.47000 * 300.00302 * 5 3 2 37 37 H 1.09001 * 109.46761 * 60.00419 * 5 3 2 38 38 H 1.09005 * 109.46683 * 180.02562 * 5 3 2 39 39 H 1.08999 * 109.46669 * 60.00461 * 7 6 3 40 40 H 1.08993 * 109.47250 * 299.99915 * 7 6 3 41 41 H 1.09012 * 110.31063 * 63.01059 * 11 10 8 42 42 H 1.08999 * 110.40570 * 300.87915 * 11 10 8 43 43 H 1.09004 * 112.35743 * 64.33322 * 14 12 11 44 44 H 1.08999 * 112.35683 * 191.74986 * 14 12 11 45 45 H 1.09004 * 110.31978 * 169.89734 * 17 15 10 46 46 H 1.08993 * 110.32027 * 47.69517 * 17 15 10 47 47 H 1.09005 * 109.47028 * 196.50900 * 19 18 17 48 48 H 1.08998 * 109.47343 * 316.50989 * 19 18 17 49 49 H 0.97006 * 119.99360 * 0.02562 * 22 20 19 50 50 H 0.96999 * 119.99930 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 8 1.6620 2.0814 -1.2209 7 6 1.4559 3.4904 -1.1001 8 6 1.0638 4.0574 -2.4401 9 8 0.9696 3.3270 -3.4037 10 7 0.8178 5.3764 -2.5678 11 6 0.8867 6.4001 -1.5032 12 6 0.4607 7.7334 -2.1924 13 1 0.1173 8.5295 -1.5318 14 6 -0.5706 7.1710 -3.2355 15 6 0.4208 6.0983 -3.8127 16 1 0.0597 5.4779 -4.6329 17 6 1.6437 7.0144 -4.1281 18 7 1.6156 8.0676 -3.0847 19 6 2.8748 8.0933 -2.3286 20 6 3.9440 8.7592 -3.1560 21 8 3.6825 9.1723 -4.2660 22 7 5.1904 8.8968 -2.6621 23 6 6.1629 9.5031 -3.4145 24 1 5.9304 9.8701 -4.4032 25 6 7.4481 9.6444 -2.9055 26 7 7.7315 9.1964 -1.7030 27 14 8.7733 10.4698 -3.9310 28 1 8.3588 11.8598 -4.2496 29 1 10.0464 10.4952 -3.1670 30 1 8.9684 9.7101 -5.1920 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.8532 0.9569 1.0571 37 1 3.9995 0.9053 -0.7161 38 1 3.9282 2.4720 0.1262 39 1 2.3769 3.9644 -0.7608 40 1 0.6619 3.6808 -0.3782 41 1 1.9044 6.4802 -1.1206 42 1 0.1977 6.1549 -0.6950 43 1 -1.4389 6.7179 -2.7571 44 1 -0.8555 7.9150 -3.9793 45 1 1.5383 7.4589 -5.1178 46 1 2.5702 6.4438 -4.0652 47 1 2.7316 8.6510 -1.4031 48 1 3.1791 7.0731 -2.0948 49 1 5.3993 8.5668 -1.7741 50 1 8.6285 9.2954 -1.3475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318192491.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:37 Heat of formation + Delta-G solvation = -75.136483 kcal Electronic energy + Delta-G solvation = -30518.284683 eV Core-core repulsion = 26353.949829 eV Total energy + Delta-G solvation = -4164.334854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31981 -39.31068 -38.17608 -37.70924 -34.21087 -34.05357 -33.61443 -31.53178 -31.03885 -30.16048 -29.86900 -27.96152 -26.56391 -25.01924 -24.14513 -23.87505 -21.57575 -21.32490 -20.63851 -19.57314 -18.60303 -17.84315 -17.54333 -17.19096 -16.69174 -16.30769 -15.92617 -15.37430 -15.06961 -14.73307 -14.50916 -14.24113 -14.12910 -13.91965 -13.76625 -13.55874 -13.26251 -13.10008 -12.92329 -12.74867 -12.38203 -12.32427 -12.11315 -12.07556 -11.91430 -11.69341 -11.63726 -11.53826 -11.38266 -11.30791 -11.22735 -11.09448 -10.86429 -10.84728 -10.44380 -10.21408 -9.90854 -9.86627 -9.49238 -8.89690 -8.46255 -7.97667 -7.93576 -6.41850 -3.82404 2.41083 2.49191 3.20185 3.25702 3.30097 3.54656 3.76620 3.90180 4.13967 4.19358 4.30745 4.43154 4.56910 4.63748 4.67815 4.79388 4.81860 4.86324 4.93180 5.01995 5.02494 5.13571 5.21369 5.26293 5.29764 5.34393 5.39226 5.42195 5.58579 5.62550 5.64284 5.69462 5.69618 5.72545 5.75189 5.83150 5.90882 5.93280 6.02046 6.04556 6.25621 6.27493 6.86491 6.92056 7.08431 7.35349 7.55039 8.03624 8.05784 8.61784 9.18409 9.54104 10.06361 10.75992 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.002856 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.241638 B = 9799.891359 C =11712.888122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.178 4.178 6 O -0.355 6.355 7 C 0.050 3.950 8 C 0.533 3.467 9 O -0.520 6.520 10 N -0.621 5.621 11 C 0.055 3.945 12 C 0.054 3.946 13 H 0.137 0.863 14 C -0.130 4.130 15 C 0.110 3.890 16 H 0.127 0.873 17 C 0.041 3.959 18 N -0.488 5.488 19 C 0.035 3.965 20 C 0.444 3.556 21 O -0.574 6.574 22 N -0.566 5.566 23 C -0.298 4.298 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.904 5.904 27 Si 0.930 3.070 28 H -0.273 1.273 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.052 0.948 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.978 -12.608 9.288 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.236 4.236 6 O -0.273 6.273 7 C -0.030 4.030 8 C 0.321 3.679 9 O -0.394 6.394 10 N -0.359 5.359 11 C -0.069 4.069 12 C -0.055 4.055 13 H 0.154 0.846 14 C -0.168 4.168 15 C 0.007 3.993 16 H 0.145 0.855 17 C -0.087 4.087 18 N -0.211 5.211 19 C -0.097 4.097 20 C 0.229 3.771 21 O -0.457 6.457 22 N -0.203 5.203 23 C -0.427 4.427 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.545 5.545 27 Si 0.757 3.243 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.107 0.893 48 H 0.069 0.931 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.033 -12.430 7.724 21.707 hybrid contribution 1.281 -0.398 0.996 1.671 sum -14.752 -12.828 8.720 21.406 Atomic orbital electron populations 1.21743 0.95372 1.01671 1.02178 1.21626 0.96638 0.94634 1.02843 1.22245 0.94530 0.94120 0.86551 0.92110 1.22322 0.95812 1.02792 1.02647 1.88049 1.89386 1.17732 1.32144 1.22177 1.01392 0.84217 0.95249 1.19869 0.77299 0.80428 0.90297 1.90731 1.50903 1.57531 1.40269 1.49219 1.69029 1.05857 1.11799 1.23413 1.02585 0.89726 0.91158 1.24787 0.92480 0.93669 0.94531 0.84587 1.23901 0.96362 0.97738 0.98837 1.24194 0.95474 0.91625 0.88004 0.85519 1.23644 0.96765 0.90827 0.97486 1.64623 1.01551 1.44509 1.10431 1.22145 0.90626 0.99635 0.97283 1.19704 0.83339 0.85641 0.88394 1.90524 1.81090 1.53266 1.20868 1.41844 1.07907 1.52796 1.17790 1.19635 0.88642 1.33902 1.00530 0.88011 1.25244 0.98413 0.97895 0.96386 1.69599 1.22055 1.46780 1.16089 0.85927 0.79305 0.79732 0.79327 1.19872 1.20993 1.19931 0.91821 0.92695 0.93131 0.90848 0.90635 0.91462 0.91471 0.92236 0.90393 0.90550 0.90115 0.90923 0.89947 0.88233 0.88701 0.92044 0.89280 0.93061 0.77637 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.81 37.16 0.36 -0.84 16 2 C -0.12 -0.97 5.64 -26.72 -0.15 -1.12 16 3 C 0.08 0.76 2.72 -26.73 -0.07 0.69 16 4 H 0.06 0.46 7.79 -51.93 -0.40 0.05 16 5 C -0.18 -1.56 9.53 37.16 0.35 -1.20 16 6 O -0.35 -4.46 9.06 -55.14 -0.50 -4.96 16 7 C 0.05 0.54 5.51 36.00 0.20 0.74 16 8 C 0.53 7.54 7.97 -10.98 -0.09 7.45 16 9 O -0.52 -9.53 16.84 -14.35 -0.24 -9.77 16 10 N -0.62 -7.62 2.95 -156.81 -0.46 -8.09 16 11 C 0.06 0.54 5.63 -1.68 -0.01 0.53 16 12 C 0.05 0.56 5.21 -62.30 -0.32 0.23 16 13 H 0.14 1.13 8.14 -51.93 -0.42 0.70 16 14 C -0.13 -1.25 6.80 -22.31 -0.15 -1.41 16 15 C 0.11 1.36 5.23 -62.58 -0.33 1.03 16 16 H 0.13 1.57 8.05 -51.93 -0.42 1.15 16 17 C 0.04 0.64 5.44 -1.45 -0.01 0.63 16 18 N -0.49 -7.44 4.84 -218.16 -1.06 -8.50 16 19 C 0.03 0.58 4.13 -4.98 -0.02 0.56 16 20 C 0.44 10.34 7.63 -10.98 -0.08 10.26 16 21 O -0.57 -15.49 15.47 5.55 0.09 -15.40 16 22 N -0.57 -14.22 5.29 -10.97 -0.06 -14.28 16 23 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 24 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 25 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 26 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 27 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 30 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 31 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 39 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 40 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.08 0.82 5.54 -51.92 -0.29 0.53 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 46 H 0.06 1.11 7.42 -51.93 -0.39 0.73 16 47 H 0.09 1.29 8.03 -51.93 -0.42 0.87 16 48 H 0.05 0.81 6.11 -51.93 -0.32 0.50 16 49 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 402.32 15.07 6.06 6.06 Total: -1.00 -34.86 402.32 -9.38 -44.25 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -8.36 Total: 8.69 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -0.56 Total: 9.63 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.85 Total: -54.61 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.66 Total: -30.13 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.86 -9.38 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318192491.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.891 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds