Wall clock time and date at job start Tue Mar 31 2020 23:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47321 * 2 1 4 4 H 1.09006 * 109.46651 * 305.00037 * 3 2 1 5 5 C 1.52992 * 109.47272 * 185.00173 * 3 2 1 6 6 O 1.42889 * 109.47314 * 64.99701 * 3 2 1 7 7 C 1.42906 * 114.00311 * 210.00217 * 6 3 2 8 8 C 1.50703 * 109.47318 * 179.97438 * 7 6 3 9 9 O 1.21283 * 119.99893 * 0.02562 * 8 7 6 10 10 N 1.34768 * 119.99913 * 179.72134 * 8 7 6 11 11 C 1.47858 * 126.93044 * 0.30489 * 10 8 7 12 12 C 1.56016 * 105.11611 * 181.89368 * 11 10 8 13 13 H 1.09001 * 116.25841 * 158.85117 * 12 11 10 14 14 C 1.57082 * 99.59615 * 32.80686 * 12 11 10 15 15 C 1.49290 * 126.92460 * 179.97438 * 10 8 7 16 16 H 1.09000 * 116.12284 * 16.90482 * 15 10 8 17 17 C 1.56008 * 104.12904 * 246.93165 * 15 10 8 18 18 N 1.47813 * 105.10997 * 288.64955 * 17 15 10 19 19 C 1.46899 * 110.72709 * 122.75991 * 18 17 15 20 20 C 1.50695 * 109.47036 * 183.75639 * 19 18 17 21 21 O 1.21294 * 120.00247 * 0.02562 * 20 19 18 22 22 N 1.34776 * 119.99991 * 179.97438 * 20 19 18 23 23 C 1.37104 * 120.00030 * 180.02562 * 22 20 19 24 24 H 1.07997 * 119.99805 * 359.97438 * 23 22 20 25 25 C 1.38951 * 119.99703 * 180.02562 * 23 22 20 26 26 N 1.31418 * 119.99461 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 120.00334 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.47073 * 90.00029 * 27 25 23 29 29 H 1.48500 * 109.46949 * 210.00382 * 27 25 23 30 30 H 1.48501 * 109.46894 * 329.99925 * 27 25 23 31 31 H 1.09004 * 109.47143 * 300.00559 * 1 2 3 32 32 H 1.08998 * 109.47078 * 60.00312 * 1 2 3 33 33 H 1.09004 * 109.47430 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47195 * 240.00190 * 2 1 3 35 35 H 1.08998 * 109.47078 * 119.99688 * 2 1 3 36 36 H 1.09005 * 109.47446 * 59.99830 * 5 3 2 37 37 H 1.09004 * 109.47415 * 179.97438 * 5 3 2 38 38 H 1.08998 * 109.47571 * 300.00057 * 5 3 2 39 39 H 1.08995 * 109.46949 * 60.00318 * 7 6 3 40 40 H 1.09001 * 109.46720 * 300.00142 * 7 6 3 41 41 H 1.08995 * 110.31846 * 300.80930 * 11 10 8 42 42 H 1.09010 * 110.31389 * 62.88186 * 11 10 8 43 43 H 1.09003 * 112.35833 * 64.33956 * 14 12 11 44 44 H 1.08999 * 112.35453 * 191.74409 * 14 12 11 45 45 H 1.08996 * 110.32395 * 47.69486 * 17 15 10 46 46 H 1.08997 * 110.32429 * 169.90512 * 17 15 10 47 47 H 1.09004 * 109.46968 * 303.75886 * 19 18 17 48 48 H 1.08996 * 109.47329 * 63.75629 * 19 18 17 49 49 H 0.96999 * 120.00253 * 359.97438 * 22 20 19 50 50 H 0.96997 * 119.99401 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5647 1.4443 -0.1258 6 8 1.6620 2.0814 1.2209 7 6 1.4559 3.4904 1.1001 8 6 1.0626 4.0573 2.4399 9 8 0.9685 3.3267 3.4035 10 7 0.8215 5.3769 2.5687 11 6 0.8905 6.4007 1.5041 12 6 0.5677 7.7507 2.2164 13 1 0.9060 8.6554 1.7112 14 6 1.1941 7.4589 3.6270 15 6 0.4241 6.0987 3.8136 16 1 0.5929 5.5681 4.7507 17 6 -1.0327 6.5780 3.5274 18 7 -0.8936 7.6580 2.5278 19 6 -1.6709 7.3513 1.3196 20 6 -1.4364 8.4226 0.2860 21 8 -0.6943 9.3501 0.5315 22 7 -2.0504 8.3496 -0.9115 23 6 -1.8366 9.3239 -1.8520 24 1 -1.1765 10.1502 -1.6331 25 6 -2.4701 9.2489 -3.0865 26 7 -2.2655 10.1831 -3.9878 27 14 -3.6124 7.8201 -3.4648 28 1 -4.9960 8.1706 -3.0547 29 1 -3.5847 7.5368 -4.9223 30 1 -3.1644 6.6171 -2.7182 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.8531 0.9570 -1.0572 37 1 3.9281 2.4720 -0.1262 38 1 3.9995 0.9053 0.7160 39 1 0.6618 3.6808 0.3783 40 1 2.3769 3.9644 0.7608 41 1 1.8907 6.4305 1.0720 42 1 0.1510 6.1928 0.7307 43 1 2.2748 7.3241 3.5809 44 1 0.9064 8.2025 4.3702 45 1 -1.6279 5.7595 3.1228 46 1 -1.4896 6.9654 4.4380 47 1 -1.3571 6.3866 0.9208 48 1 -2.7312 7.3135 1.5695 49 1 -2.6430 7.6073 -1.1083 50 1 -2.7074 10.1305 -4.8496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318192492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:39 Heat of formation + Delta-G solvation = -88.882850 kcal Electronic energy + Delta-G solvation = -30918.267972 eV Core-core repulsion = 26753.337031 eV Total energy + Delta-G solvation = -4164.930941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.44842 -40.45450 -39.77971 -38.87829 -36.05147 -35.06772 -34.77003 -33.74382 -32.47434 -30.85175 -30.83701 -28.99939 -28.11752 -26.17583 -25.52031 -24.57522 -22.50496 -22.02869 -21.82929 -21.23647 -20.30308 -19.70635 -18.54444 -17.99998 -17.75863 -17.71361 -17.05672 -16.81532 -16.54557 -16.28491 -15.70922 -15.39863 -15.15157 -14.94974 -14.91130 -14.67761 -14.40476 -14.25943 -14.07001 -13.97377 -13.82988 -13.66427 -13.23656 -13.09124 -13.02955 -12.94081 -12.67024 -12.59094 -12.49777 -12.39466 -12.34464 -12.27954 -12.03776 -11.97219 -11.95721 -11.52520 -11.47222 -10.99296 -10.66958 -10.29729 -10.21611 -9.88435 -9.23774 -8.39318 -5.99239 1.29819 1.35500 1.41064 1.43606 1.47703 1.95086 2.23158 2.58638 2.72198 3.07214 3.17234 3.29824 3.40365 3.56651 3.72118 3.84335 3.92201 3.95796 3.99404 4.07024 4.13785 4.17317 4.21327 4.30338 4.35329 4.39857 4.50407 4.57291 4.62999 4.68628 4.69231 4.74540 4.78731 4.89200 4.96637 5.02157 5.06552 5.11346 5.13893 5.18429 5.24573 5.39625 5.54256 5.74587 5.86944 6.01508 6.08972 6.34158 6.60630 6.90489 6.97371 7.41361 7.96686 8.77896 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008744 B = 0.003593 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.506979 B = 7790.125863 C = 9997.380831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.074 3.926 4 H 0.073 0.927 5 C -0.173 4.173 6 O -0.381 6.381 7 C 0.049 3.951 8 C 0.532 3.468 9 O -0.565 6.565 10 N -0.616 5.616 11 C 0.059 3.941 12 C 0.061 3.939 13 H 0.127 0.873 14 C -0.122 4.122 15 C 0.111 3.889 16 H 0.134 0.866 17 C 0.032 3.968 18 N -0.508 5.508 19 C 0.037 3.963 20 C 0.457 3.543 21 O -0.598 6.598 22 N -0.592 5.592 23 C -0.321 4.321 24 H 0.061 0.939 25 C -0.012 4.012 26 N -0.933 5.933 27 Si 0.957 3.043 28 H -0.261 1.261 29 H -0.276 1.276 30 H -0.232 1.232 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.114 0.886 49 H 0.387 0.613 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.127 -19.269 9.451 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.017 3.983 4 H 0.091 0.909 5 C -0.231 4.231 6 O -0.300 6.300 7 C -0.031 4.031 8 C 0.321 3.679 9 O -0.444 6.444 10 N -0.352 5.352 11 C -0.065 4.065 12 C -0.047 4.047 13 H 0.145 0.855 14 C -0.160 4.160 15 C 0.009 3.991 16 H 0.152 0.848 17 C -0.096 4.096 18 N -0.232 5.232 19 C -0.094 4.094 20 C 0.245 3.755 21 O -0.481 6.481 22 N -0.233 5.233 23 C -0.451 4.451 24 H 0.080 0.920 25 C -0.211 4.211 26 N -0.574 5.574 27 Si 0.778 3.222 28 H -0.186 1.186 29 H -0.202 1.202 30 H -0.155 1.155 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.124 0.876 45 H 0.080 0.920 46 H 0.127 0.873 47 H 0.094 0.906 48 H 0.132 0.868 49 H 0.222 0.778 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.320 -18.675 10.272 22.231 hybrid contribution -0.420 -0.720 -1.400 1.630 sum 5.900 -19.395 8.872 22.129 Atomic orbital electron populations 1.21728 0.95676 1.02089 1.01419 1.21654 0.96386 0.94193 1.03324 1.22482 0.95265 0.94531 0.85992 0.90900 1.22288 0.95014 1.02591 1.03184 1.88008 1.89766 1.18255 1.33974 1.22251 1.02776 0.83969 0.94075 1.20312 0.76426 0.80464 0.90674 1.90695 1.53362 1.58517 1.41796 1.49312 1.68083 1.05588 1.12180 1.23383 1.03303 0.88904 0.90869 1.24729 0.87678 0.95768 0.96513 0.85507 1.24015 1.00075 0.95697 0.96244 1.24254 0.94459 0.91571 0.88815 0.84792 1.23681 0.96123 0.92496 0.97343 1.64645 1.07670 1.41860 1.09029 1.22201 1.01259 0.95594 0.90381 1.20551 0.83175 0.88789 0.83015 1.90511 1.40701 1.37414 1.79489 1.42048 1.43823 1.23912 1.13543 1.18994 1.27732 1.03977 0.94370 0.92048 1.26007 0.99464 1.00846 0.94740 1.69795 1.44593 1.35808 1.07194 0.85476 0.78942 0.78850 0.78971 1.18557 1.20166 1.15547 0.94185 0.92360 0.91692 0.88393 0.91927 0.89573 0.92506 0.92449 0.89065 0.88633 0.89294 0.90610 0.88789 0.87598 0.92015 0.87350 0.90597 0.86802 0.77809 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.81 71.98 0.71 -1.76 16 2 C -0.12 -1.78 5.64 30.59 0.17 -1.61 16 3 C 0.07 1.26 2.72 30.59 0.08 1.34 16 4 H 0.07 1.07 7.79 -2.38 -0.02 1.05 16 5 C -0.17 -2.46 9.53 71.98 0.69 -1.78 16 6 O -0.38 -9.07 9.06 -129.94 -1.18 -10.25 16 7 C 0.05 1.03 5.51 71.24 0.39 1.42 16 8 C 0.53 13.97 7.97 87.66 0.70 14.67 16 9 O -0.57 -19.28 16.85 16.00 0.27 -19.01 16 10 N -0.62 -14.09 2.95 -767.74 -2.26 -16.35 16 11 C 0.06 1.36 5.61 87.16 0.49 1.85 16 12 C 0.06 1.62 4.15 46.85 0.19 1.82 16 13 H 0.13 4.23 6.42 -2.39 -0.02 4.22 16 14 C -0.12 -2.44 6.83 33.58 0.23 -2.21 16 15 C 0.11 2.31 5.24 47.05 0.25 2.56 16 16 H 0.13 2.66 8.06 -2.39 -0.02 2.64 16 17 C 0.03 0.68 6.26 87.17 0.55 1.22 16 18 N -0.51 -13.90 5.16 -845.51 -4.36 -18.26 16 19 C 0.04 1.07 4.63 85.56 0.40 1.46 16 20 C 0.46 18.83 7.44 87.66 0.65 19.48 16 21 O -0.60 -29.60 13.61 -3.07 -0.04 -29.64 16 22 N -0.59 -26.03 5.09 -306.98 -1.56 -27.60 16 23 C -0.32 -17.78 10.16 84.04 0.85 -16.93 16 24 H 0.06 4.04 7.39 -2.91 -0.02 4.02 16 25 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 26 N -0.93 -54.39 13.96 21.66 0.30 -54.09 16 27 Si 0.96 37.28 27.74 68.60 1.90 39.18 16 28 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 29 H -0.28 -10.77 7.11 99.48 0.71 -10.07 16 30 H -0.23 -7.52 6.52 99.48 0.65 -6.87 16 31 H 0.04 0.83 7.82 -2.38 -0.02 0.81 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.06 0.81 7.87 -2.39 -0.02 0.79 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 1.65 8.08 -2.39 -0.02 1.63 16 40 H 0.10 1.64 7.87 -2.39 -0.02 1.62 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.08 1.85 5.22 -2.38 -0.01 1.84 16 43 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.06 1.33 7.60 -2.39 -0.02 1.31 16 46 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.08 1.91 5.64 -2.39 -0.01 1.90 16 48 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 49 H 0.39 14.27 5.76 -92.71 -0.53 13.73 16 50 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -75.51 395.52 0.24 -75.27 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: 0.35 Total: 39.36 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 6.81 Total: 21.38 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -7.88 Total: -116.29 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -0.95 Total: -58.90 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 1.90 Total: 39.18 kcal Total: -75.51 0.24 -75.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318192492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.610 kcal (2) G-P(sol) polarization free energy of solvation -75.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds