Wall clock time and date at job start Tue Mar 31 2020 23:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46634 * 2 1 4 4 H 1.08999 * 109.47500 * 54.68244 * 3 2 1 5 5 C 1.52999 * 109.47231 * 294.67821 * 3 2 1 6 6 N 1.46508 * 109.46841 * 185.00505 * 5 3 2 7 7 C 1.34780 * 119.99654 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99904 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99705 * 180.02562 * 7 6 5 10 10 H 1.08996 * 110.66801 * 61.75338 * 9 7 6 11 11 C 1.55009 * 110.74586 * 298.54122 * 9 7 6 12 12 C 1.55818 * 102.78570 * 241.67754 * 11 9 7 13 13 H 1.09000 * 115.38712 * 158.11050 * 12 11 9 14 14 C 1.55822 * 105.32796 * 287.31159 * 12 11 9 15 15 C 1.55001 * 102.78734 * 72.69018 * 14 12 11 16 16 C 1.55813 * 102.78897 * 0.02562 * 15 14 12 17 17 H 1.09003 * 115.94102 * 158.43193 * 16 15 14 18 18 O 1.46534 * 101.24641 * 32.42102 * 12 11 9 19 19 N 1.46903 * 109.46646 * 174.67924 * 3 2 1 20 20 C 1.46895 * 111.00248 * 272.62381 * 19 3 2 21 21 C 1.50697 * 109.47252 * 176.01876 * 20 19 3 22 22 O 1.21293 * 120.00311 * 0.02562 * 21 20 19 23 23 N 1.34778 * 120.00058 * 179.97438 * 21 20 19 24 24 C 1.37096 * 120.00288 * 179.72322 * 23 21 20 25 25 H 1.07997 * 120.00182 * 0.28063 * 24 23 21 26 26 C 1.38948 * 120.00207 * 180.27934 * 24 23 21 27 27 N 1.31415 * 120.00090 * 0.02562 * 26 24 23 28 28 Si 1.86806 * 120.00107 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.47007 * 89.99651 * 28 26 24 30 30 H 1.48491 * 109.47137 * 209.99867 * 28 26 24 31 31 H 1.48497 * 109.47003 * 330.00038 * 28 26 24 32 32 H 1.08993 * 109.47326 * 179.42392 * 1 2 3 33 33 H 1.09001 * 109.47068 * 299.42367 * 1 2 3 34 34 H 1.08999 * 109.47375 * 59.41799 * 1 2 3 35 35 H 1.08999 * 109.46845 * 240.00229 * 2 1 3 36 36 H 1.08995 * 109.47179 * 119.99911 * 2 1 3 37 37 H 1.09003 * 109.47151 * 305.00113 * 5 3 2 38 38 H 1.08997 * 109.46976 * 65.00672 * 5 3 2 39 39 H 0.97002 * 119.99762 * 359.97438 * 6 5 3 40 40 H 1.09001 * 110.74696 * 0.02562 * 11 9 7 41 41 H 1.09000 * 110.74791 * 123.16783 * 11 9 7 42 42 H 1.08999 * 110.74747 * 191.01818 * 14 12 11 43 43 H 1.08998 * 110.74964 * 314.36487 * 14 12 11 44 44 H 1.08993 * 110.74608 * 241.67449 * 15 14 12 45 45 H 1.09005 * 110.90471 * 118.39584 * 15 14 12 46 46 H 1.00899 * 111.00166 * 148.66633 * 19 3 2 47 47 H 1.09007 * 109.47141 * 56.01630 * 20 19 3 48 48 H 1.09002 * 109.47301 * 296.02239 * 20 19 3 49 49 H 0.97009 * 120.00208 * 0.02562 * 23 21 20 50 50 H 0.96997 * 120.00002 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6009 1.9832 0.8385 5 6 1.6421 2.1242 -1.3107 6 7 2.2312 3.4645 -1.3626 7 6 2.0139 4.2552 -2.4322 8 8 1.3310 3.8569 -3.3520 9 6 2.6204 5.6338 -2.4858 10 1 3.7086 5.5763 -2.4650 11 6 2.0945 6.5107 -1.3208 12 6 1.3683 7.6718 -2.0639 13 1 0.6168 8.2029 -1.4795 14 6 2.5055 8.5484 -2.6692 15 6 3.0313 7.6715 -3.8341 16 6 2.1278 6.4050 -3.7476 17 1 2.0511 5.8109 -4.6583 18 8 0.8731 6.9816 -3.2578 19 7 3.5033 1.4446 0.1284 20 6 3.9079 1.4249 1.5404 21 6 5.4091 1.3289 1.6316 22 8 6.0764 1.2820 0.6198 23 7 6.0103 1.2961 2.8374 24 6 7.3756 1.2031 2.9203 25 1 7.9697 1.1605 2.0195 26 6 7.9950 1.1635 4.1635 27 7 7.2721 1.2147 5.2598 28 14 9.8554 1.0374 4.2765 29 1 10.4431 2.4008 4.3036 30 1 10.2278 0.3130 5.5181 31 1 10.3739 0.2982 3.0976 32 1 -0.3633 -1.0275 -0.0103 33 1 -0.3633 0.5049 0.8951 34 1 -0.3634 0.5228 -0.8847 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 2.0062 1.5345 -2.1520 38 1 0.5562 2.2022 -1.3646 39 1 2.7771 3.7831 -0.6267 40 1 1.3941 5.9503 -0.7014 41 1 2.9208 6.8901 -0.7196 42 1 2.1079 9.4913 -3.0446 43 1 3.2903 8.7246 -1.9337 44 1 4.0782 7.4108 -3.6790 45 1 2.8981 8.1757 -4.7914 46 1 3.9075 2.2341 -0.3525 47 1 3.4581 0.5641 2.0354 48 1 3.5722 2.3404 2.0275 49 1 5.4767 1.3340 3.6466 50 1 7.7045 1.1875 6.1276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318578866.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:58 Heat of formation + Delta-G solvation = -111.234369 kcal Electronic energy + Delta-G solvation = -29964.976109 eV Core-core repulsion = 25799.075934 eV Total energy + Delta-G solvation = -4165.900175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40338 -39.45033 -38.41168 -37.21541 -34.20191 -33.92991 -32.70138 -32.59761 -31.32488 -31.22892 -29.99399 -28.41470 -26.16576 -24.50359 -23.69044 -23.16892 -21.91533 -20.93460 -20.44111 -19.94967 -19.32241 -18.00528 -17.73279 -16.89800 -16.62369 -16.02307 -15.82297 -15.59605 -15.34742 -14.92853 -14.61266 -14.51350 -14.39676 -13.98249 -13.83230 -13.52751 -13.49664 -13.18089 -12.93786 -12.65918 -12.43808 -12.16233 -11.97984 -11.95796 -11.78819 -11.70676 -11.57690 -11.44012 -11.39118 -11.34206 -11.18483 -11.07337 -10.85633 -10.60583 -10.42820 -10.25904 -10.25361 -9.83503 -9.55177 -9.21231 -8.53109 -8.14720 -8.00662 -6.46054 -3.86995 2.50391 2.93002 3.14339 3.23575 3.29488 3.53009 3.85214 3.98397 4.07972 4.17809 4.23787 4.35028 4.49489 4.55870 4.68640 4.72898 4.81755 4.87884 4.94459 5.08510 5.09832 5.15568 5.16343 5.20771 5.26851 5.41783 5.43048 5.50280 5.51710 5.61932 5.63494 5.67105 5.71716 5.71902 5.77931 5.82857 5.86025 6.00645 6.13303 6.16579 6.24162 6.25652 6.36960 7.10717 7.28141 7.51101 7.52385 8.01717 8.06623 8.56623 9.13669 9.49551 10.00941 10.71607 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010170 B = 0.002582 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.417966 B =10839.764475 C =12857.195656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C 0.076 3.924 4 H 0.050 0.950 5 C 0.117 3.883 6 N -0.731 5.731 7 C 0.528 3.472 8 O -0.534 6.534 9 C -0.144 4.144 10 H 0.113 0.887 11 C -0.141 4.141 12 C 0.060 3.940 13 H 0.131 0.869 14 C -0.148 4.148 15 C -0.150 4.150 16 C 0.090 3.910 17 H 0.138 0.862 18 O -0.366 6.366 19 N -0.663 5.663 20 C 0.049 3.951 21 C 0.440 3.560 22 O -0.581 6.581 23 N -0.563 5.563 24 C -0.300 4.300 25 H 0.103 0.897 26 C 0.023 3.977 27 N -0.902 5.902 28 Si 0.930 3.070 29 H -0.278 1.278 30 H -0.283 1.283 31 H -0.269 1.269 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.398 0.602 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.346 0.654 47 H 0.088 0.912 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.794 11.215 -10.043 20.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.034 4.034 4 H 0.068 0.932 5 C -0.007 4.007 6 N -0.384 5.384 7 C 0.314 3.686 8 O -0.410 6.410 9 C -0.166 4.166 10 H 0.131 0.869 11 C -0.179 4.179 12 C 0.002 3.998 13 H 0.149 0.851 14 C -0.186 4.186 15 C -0.188 4.188 16 C 0.032 3.968 17 H 0.156 0.844 18 O -0.284 6.284 19 N -0.298 5.298 20 C -0.083 4.083 21 C 0.225 3.775 22 O -0.465 6.465 23 N -0.200 5.200 24 C -0.429 4.429 25 H 0.121 0.879 26 C -0.179 4.179 27 N -0.543 5.543 28 Si 0.757 3.243 29 H -0.204 1.204 30 H -0.209 1.209 31 H -0.194 1.194 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.233 0.767 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.168 0.832 47 H 0.106 0.894 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.945 10.185 -11.365 20.673 hybrid contribution 0.962 0.919 1.606 2.086 sum -12.984 11.103 -9.759 19.675 Atomic orbital electron populations 1.21854 0.95903 1.01860 1.01708 1.21482 0.94664 0.95205 1.03544 1.21844 0.88935 0.96896 0.95717 0.93241 1.21669 0.98496 0.82084 0.98448 1.46062 1.53925 1.16604 1.21842 1.20280 0.80315 0.86216 0.81807 1.90701 1.38627 1.74882 1.36782 1.23140 1.02285 0.92797 0.98363 0.86856 1.23304 1.01018 0.96780 0.96805 1.24702 0.94830 0.92752 0.87518 0.85133 1.23255 0.98278 0.98997 0.98082 1.23270 0.99884 0.96107 0.99530 1.24519 0.83074 0.92959 0.96276 0.84414 1.90138 1.28854 1.68942 1.40508 1.60028 1.06378 1.50702 1.12680 1.21757 0.96051 1.01132 0.89374 1.19783 0.88473 0.84698 0.84523 1.90533 1.65515 1.55302 1.35186 1.41870 1.07768 1.64107 1.06263 1.19697 0.81845 1.47336 0.94034 0.87929 1.25261 1.00580 0.97294 0.94766 1.69609 1.36301 1.50499 0.97895 0.85862 0.82228 0.78401 0.77843 1.20419 1.20901 1.19379 0.92467 0.92867 0.92584 0.90910 0.91158 0.90366 0.90647 0.76691 0.90337 0.89308 0.90702 0.90293 0.90214 0.90377 0.83249 0.89402 0.93926 0.77493 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.69 37.16 0.36 -1.05 16 2 C -0.11 -1.22 5.66 -26.73 -0.15 -1.38 16 3 C 0.08 0.88 2.27 -67.71 -0.15 0.73 16 4 H 0.05 0.53 7.81 -51.93 -0.41 0.13 16 5 C 0.12 1.34 4.93 -4.04 -0.02 1.32 16 6 N -0.73 -8.03 4.88 -60.29 -0.29 -8.32 16 7 C 0.53 6.50 7.01 -10.98 -0.08 6.42 16 8 O -0.53 -8.50 15.88 5.55 0.09 -8.42 16 9 C -0.14 -1.36 2.89 -89.17 -0.26 -1.62 16 10 H 0.11 0.90 7.81 -51.93 -0.41 0.50 16 11 C -0.14 -1.10 6.10 -24.17 -0.15 -1.25 16 12 C 0.06 0.48 5.71 -23.72 -0.14 0.35 16 13 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 14 C -0.15 -1.00 6.52 -24.17 -0.16 -1.15 16 15 C -0.15 -1.11 6.52 -24.17 -0.16 -1.26 16 16 C 0.09 0.89 4.64 -23.69 -0.11 0.78 16 17 H 0.14 1.46 7.71 -51.93 -0.40 1.06 16 18 O -0.37 -4.30 11.64 -35.23 -0.41 -4.71 16 19 N -0.66 -9.96 5.86 -107.99 -0.63 -10.59 16 20 C 0.05 0.81 5.93 -4.98 -0.03 0.78 16 21 C 0.44 9.98 7.83 -10.99 -0.09 9.90 16 22 O -0.58 -15.36 15.87 5.55 0.09 -15.27 16 23 N -0.56 -13.83 5.29 -10.97 -0.06 -13.89 16 24 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 25 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 26 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 27 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 28 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 29 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 30 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 31 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.49 6.66 -51.93 -0.35 0.15 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.84 6.81 -51.93 -0.35 0.49 16 39 H 0.40 3.86 7.41 -40.82 -0.30 3.56 16 40 H 0.08 0.65 7.73 -51.93 -0.40 0.25 16 41 H 0.09 0.55 7.81 -51.93 -0.41 0.14 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.44 7.81 -51.93 -0.41 0.03 16 44 H 0.08 0.51 7.81 -51.93 -0.41 0.10 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.35 5.28 6.57 -39.29 -0.26 5.02 16 47 H 0.09 1.35 7.46 -51.92 -0.39 0.97 16 48 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 49 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 50 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 399.63 15.07 6.02 6.02 Total: -1.00 -33.54 399.63 -8.94 -42.48 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -8.08 Total: 15.61 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.36 Total: 4.75 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.26 Total: -56.12 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.23 Total: -28.39 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.54 -8.94 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318578866.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.751 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds