Wall clock time and date at job start Tue Mar 31 2020 23:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.47129 * 2 1 4 4 C 1.52994 * 109.47405 * 120.00246 * 2 1 3 5 5 C 1.50697 * 109.47315 * 180.67211 * 4 2 1 6 6 O 1.21275 * 120.00208 * 354.39452 * 5 4 2 7 7 N 1.34781 * 119.99918 * 174.39882 * 5 4 2 8 8 C 1.46504 * 119.99828 * 179.72243 * 7 5 4 9 9 C 1.52996 * 109.46643 * 180.27215 * 8 7 5 10 10 H 1.09007 * 112.74779 * 75.77367 * 9 8 7 11 11 C 1.53524 * 113.47233 * 206.61768 * 9 8 7 12 12 C 1.53514 * 83.57057 * 140.79330 * 11 9 8 13 13 N 1.47473 * 87.93705 * 333.97610 * 12 11 9 14 14 C 1.46896 * 111.00116 * 138.70381 * 13 12 11 15 15 C 1.50697 * 109.47328 * 74.03121 * 14 13 12 16 16 O 1.21298 * 119.99846 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00589 * 179.97438 * 15 14 13 18 18 C 1.37093 * 120.00075 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00515 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99813 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00273 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00285 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46816 * 59.99545 * 22 20 18 24 24 H 1.48498 * 109.47422 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46962 * 299.99936 * 22 20 18 26 26 C 1.52999 * 109.47130 * 240.00601 * 2 1 3 27 27 C 1.53000 * 117.50249 * 128.74768 * 26 2 1 28 28 C 1.52999 * 117.50138 * 60.08317 * 26 2 1 29 29 H 1.09004 * 109.46838 * 304.79983 * 1 2 3 30 30 H 1.09004 * 109.47051 * 64.79764 * 1 2 3 31 31 H 1.08998 * 109.47437 * 184.79797 * 1 2 3 32 32 H 0.96701 * 113.99785 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47228 * 60.66606 * 4 2 1 34 34 H 1.09005 * 109.46749 * 300.66836 * 4 2 1 35 35 H 0.97001 * 120.00121 * 359.97438 * 7 5 4 36 36 H 1.09002 * 109.46922 * 300.27062 * 8 7 5 37 37 H 1.08997 * 109.46978 * 60.27080 * 8 7 5 38 38 H 1.08998 * 114.16684 * 254.44180 * 11 9 8 39 39 H 1.08994 * 114.16822 * 27.14830 * 11 9 8 40 40 H 1.08998 * 113.47299 * 219.20439 * 12 11 9 41 41 H 1.09006 * 113.52918 * 88.75478 * 12 11 9 42 42 H 1.09005 * 109.47014 * 194.03122 * 14 13 12 43 43 H 1.08999 * 109.47636 * 314.02647 * 14 13 12 44 44 H 0.97005 * 119.99383 * 0.02562 * 17 15 14 45 45 H 0.96996 * 120.00251 * 179.97438 * 21 20 18 46 46 H 1.09006 * 115.54793 * 274.41671 * 26 2 1 47 47 H 1.08998 * 117.49674 * 359.97438 * 27 26 2 48 48 H 1.09005 * 117.49848 * 145.01885 * 27 26 2 49 49 H 1.08998 * 117.49744 * 214.97956 * 28 26 2 50 50 H 1.08997 * 117.50243 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5469 -0.7068 1.2575 6 8 4.1544 -0.2635 0.3061 7 7 4.2196 -1.1868 2.3223 8 6 5.6846 -1.1783 2.3278 9 6 6.1930 -1.7795 3.6397 10 1 6.1067 -2.8658 3.6669 11 6 7.5792 -1.2643 4.0517 12 6 6.9754 -1.2804 5.4630 13 7 5.6490 -1.1167 4.8396 14 6 4.6481 -1.9644 5.5011 15 6 4.2964 -1.3733 6.8419 16 8 4.8277 -0.3471 7.2105 17 7 3.3916 -1.9850 7.6317 18 6 3.0713 -1.4469 8.8513 19 1 3.5443 -0.5332 9.1795 20 6 2.1389 -2.0778 9.6657 21 7 1.5636 -3.1899 9.2666 22 14 1.7029 -1.3452 11.3278 23 1 1.1481 0.0191 11.1372 24 1 0.6907 -2.2017 11.9962 25 1 2.9230 -1.2700 12.1709 26 6 2.0400 -0.7211 -1.2493 27 6 3.0763 0.0041 -2.1101 28 6 1.6374 -0.1481 -2.6096 29 1 -0.3633 0.5865 0.8439 30 1 -0.3633 0.4376 -0.9299 31 1 -0.3634 -1.0240 0.0860 32 1 2.9703 1.4236 0.0004 33 1 1.6865 -1.7523 1.2432 34 1 1.6669 -0.2144 2.1391 35 1 3.7337 -1.5411 3.0834 36 1 6.0545 -1.7692 1.4899 37 1 6.0423 -0.1529 2.2353 38 1 8.3849 -1.9832 3.9027 39 1 7.8141 -0.2677 3.6781 40 1 7.2763 -0.4292 6.0737 41 1 7.0985 -2.2332 5.9781 42 1 3.7525 -2.0195 4.8821 43 1 5.0553 -2.9658 5.6409 44 1 2.9670 -2.8059 7.3370 45 1 0.9129 -3.6305 9.8353 46 1 2.1253 -1.8045 -1.1648 47 1 3.3945 0.9951 -1.7866 48 1 3.8432 -0.6022 -2.5923 49 1 1.4582 -0.8545 -3.4202 50 1 1.0088 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323213966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:18 Heat of formation + Delta-G solvation = -60.284443 kcal Electronic energy + Delta-G solvation = -30259.327464 eV Core-core repulsion = 26095.636643 eV Total energy + Delta-G solvation = -4163.690821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.72713 -40.14629 -38.29471 -37.76688 -35.06721 -34.54300 -33.97113 -32.37091 -31.45488 -30.74478 -29.25647 -27.40866 -25.88655 -23.81258 -23.74107 -22.84065 -22.29723 -20.74921 -19.99574 -19.64344 -19.34232 -17.98011 -17.39267 -17.04289 -16.50242 -16.19150 -15.90501 -15.63555 -15.29625 -15.02685 -14.63850 -14.37446 -14.23880 -13.91534 -13.84608 -13.57704 -13.02955 -12.91641 -12.85748 -12.56357 -12.42232 -12.29924 -12.17879 -11.85969 -11.71188 -11.56602 -11.43514 -11.38157 -11.15612 -11.09937 -10.88249 -10.60218 -10.51604 -10.48765 -10.31688 -10.26885 -9.94715 -9.59073 -9.55336 -9.09176 -8.83575 -8.33831 -8.03374 -6.48089 -3.89079 2.56060 3.06932 3.15710 3.22089 3.26303 3.75285 3.79494 3.92000 4.13163 4.16477 4.38938 4.48005 4.59811 4.65317 4.70563 4.90023 4.91738 4.98066 4.99369 5.15710 5.18016 5.26204 5.30690 5.34639 5.42288 5.42541 5.46911 5.57484 5.59828 5.65496 5.66239 5.74026 5.75280 5.82160 5.95900 5.99310 6.03384 6.09639 6.14194 6.18712 6.19674 6.35263 6.51693 7.11617 7.41621 7.49117 7.65929 7.98445 8.15376 8.53918 9.11425 9.46181 9.97768 10.69449 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.002651 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.503094 B =10560.985474 C =12424.132489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.180 3.820 3 O -0.562 6.562 4 C -0.173 4.173 5 C 0.515 3.485 6 O -0.541 6.541 7 N -0.720 5.720 8 C 0.142 3.858 9 C 0.003 3.997 10 H 0.081 0.919 11 C -0.136 4.136 12 C 0.013 3.987 13 N -0.435 5.435 14 C 0.009 3.991 15 C 0.442 3.558 16 O -0.576 6.576 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.171 4.171 27 C -0.139 4.139 28 C -0.185 4.185 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.384 0.616 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.391 0.609 45 H 0.272 0.728 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.124 -1.538 -19.479 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.138 3.862 3 O -0.372 6.372 4 C -0.213 4.213 5 C 0.302 3.698 6 O -0.420 6.420 7 N -0.371 5.371 8 C 0.018 3.982 9 C -0.108 4.108 10 H 0.099 0.901 11 C -0.174 4.174 12 C -0.116 4.116 13 N -0.158 5.158 14 C -0.124 4.124 15 C 0.227 3.773 16 O -0.460 6.460 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.178 4.178 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.190 4.190 27 C -0.176 4.176 28 C -0.222 4.222 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.237 0.763 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.224 0.776 45 H 0.082 0.918 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.104 0.896 49 H 0.105 0.895 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.801 0.131 -19.815 20.013 hybrid contribution -0.002 -1.696 1.367 2.179 sum 2.799 -1.565 -18.448 18.725 Atomic orbital electron populations 1.21745 0.92101 1.02418 1.03190 1.20286 0.93927 0.81827 0.90146 1.86441 1.28706 1.25406 1.96695 1.22501 0.92867 1.04006 1.01905 1.20596 0.89929 0.77094 0.82156 1.90636 1.70329 1.46628 1.34420 1.46026 1.07609 1.63569 1.19932 1.21303 0.79535 1.01660 0.95704 1.23817 0.96046 0.98117 0.92778 0.90068 1.23196 0.94871 1.02301 0.97014 1.23584 0.89529 1.02396 0.96062 1.68879 1.04383 1.39862 1.02691 1.22536 0.97538 0.95543 0.96747 1.19587 0.84360 0.87172 0.86142 1.90541 1.55509 1.25196 1.74710 1.41856 1.36725 1.24604 1.16775 1.19642 1.21518 1.08962 0.92814 0.87976 1.25258 0.96521 0.95942 1.00107 1.69594 1.28524 1.17559 1.38631 0.85921 0.78296 0.78783 0.81267 1.19830 1.20931 1.19890 1.22814 1.05399 0.98976 0.91802 1.22674 0.91198 1.02066 1.01645 1.23014 0.99559 1.03062 0.96571 0.91604 0.91532 0.91091 0.76278 0.87976 0.87845 0.76328 0.91371 0.90764 0.90526 0.88627 0.88867 0.91562 0.89959 0.92529 0.77559 0.91766 0.88265 0.88479 0.89597 0.89487 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.75 37.16 0.33 -0.92 16 2 C 0.18 1.88 0.92 -90.62 -0.08 1.80 16 3 O -0.56 -7.12 12.10 -52.18 -0.63 -7.76 16 4 C -0.17 -1.70 4.96 -27.89 -0.14 -1.84 16 5 C 0.52 5.99 7.32 -10.99 -0.08 5.91 16 6 O -0.54 -7.15 11.37 -11.39 -0.13 -7.28 16 7 N -0.72 -8.07 5.46 -60.29 -0.33 -8.40 16 8 C 0.14 1.55 5.81 -4.04 -0.02 1.53 16 9 C 0.00 0.03 3.25 -71.43 -0.23 -0.20 16 10 H 0.08 0.80 7.77 -51.93 -0.40 0.40 16 11 C -0.14 -1.40 8.00 -26.19 -0.21 -1.61 16 12 C 0.01 0.18 6.71 -7.55 -0.05 0.13 16 13 N -0.44 -6.54 5.63 -237.94 -1.34 -7.88 16 14 C 0.01 0.14 5.07 -4.98 -0.03 0.11 16 15 C 0.44 9.98 7.62 -10.99 -0.08 9.90 16 16 O -0.58 -15.20 15.34 5.54 0.08 -15.11 16 17 N -0.56 -13.71 5.29 -10.96 -0.06 -13.77 16 18 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 19 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -23.89 13.05 55.50 0.72 -23.16 16 22 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.17 -1.73 4.03 -90.62 -0.37 -2.10 16 27 C -0.14 -1.47 7.93 -26.69 -0.21 -1.68 16 28 C -0.19 -1.75 9.62 -26.69 -0.26 -2.00 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.60 7.14 -51.93 -0.37 0.23 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.38 4.89 5.33 45.56 0.24 5.13 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 4.39 6.22 -40.82 -0.25 4.14 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.98 7.94 -51.93 -0.41 0.57 16 40 H 0.09 1.51 8.13 -51.93 -0.42 1.08 16 41 H 0.07 0.91 7.70 -51.93 -0.40 0.51 16 42 H 0.08 1.16 6.33 -51.93 -0.33 0.83 16 43 H 0.06 0.82 7.56 -51.93 -0.39 0.42 16 44 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 45 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 46 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 47 H 0.10 1.11 6.29 -51.93 -0.33 0.79 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 0.91 7.59 -51.93 -0.39 0.52 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -31.65 396.77 -9.91 -41.55 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -7.51 Total: 18.93 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.68 Total: 1.24 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -1.00 Total: -53.21 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.68 Total: -30.15 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.65 -9.91 -41.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323213966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.734 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds