Wall clock time and date at job start Tue Mar 31 2020 23:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.47129 * 2 1 4 4 C 1.52994 * 109.47405 * 120.00246 * 2 1 3 5 5 C 1.50697 * 109.47315 * 180.67211 * 4 2 1 6 6 O 1.21275 * 120.00208 * 354.39452 * 5 4 2 7 7 N 1.34781 * 119.99918 * 174.39882 * 5 4 2 8 8 C 1.46504 * 119.99828 * 179.72243 * 7 5 4 9 9 C 1.52996 * 109.46643 * 180.27215 * 8 7 5 10 10 H 1.09007 * 112.74779 * 75.77367 * 9 8 7 11 11 C 1.53524 * 113.47233 * 206.61768 * 9 8 7 12 12 C 1.53514 * 83.57057 * 140.79330 * 11 9 8 13 13 N 1.47473 * 87.93705 * 333.97610 * 12 11 9 14 14 C 1.46896 * 111.00116 * 138.70381 * 13 12 11 15 15 C 1.50697 * 109.47328 * 74.03121 * 14 13 12 16 16 O 1.21298 * 119.99846 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00589 * 179.97438 * 15 14 13 18 18 C 1.37093 * 120.00075 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00515 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99813 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00273 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00285 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46816 * 59.99545 * 22 20 18 24 24 H 1.48498 * 109.47422 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46962 * 299.99936 * 22 20 18 26 26 C 1.52999 * 109.47130 * 240.00601 * 2 1 3 27 27 C 1.53000 * 117.50249 * 128.74768 * 26 2 1 28 28 C 1.52999 * 117.50138 * 60.08317 * 26 2 1 29 29 H 1.09004 * 109.46838 * 304.79983 * 1 2 3 30 30 H 1.09004 * 109.47051 * 64.79764 * 1 2 3 31 31 H 1.08998 * 109.47437 * 184.79797 * 1 2 3 32 32 H 0.96701 * 113.99785 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47228 * 60.66606 * 4 2 1 34 34 H 1.09005 * 109.46749 * 300.66836 * 4 2 1 35 35 H 0.97001 * 120.00121 * 359.97438 * 7 5 4 36 36 H 1.09002 * 109.46922 * 300.27062 * 8 7 5 37 37 H 1.08997 * 109.46978 * 60.27080 * 8 7 5 38 38 H 1.08998 * 114.16684 * 254.44180 * 11 9 8 39 39 H 1.08994 * 114.16822 * 27.14830 * 11 9 8 40 40 H 1.08998 * 113.47299 * 219.20439 * 12 11 9 41 41 H 1.09006 * 113.52918 * 88.75478 * 12 11 9 42 42 H 1.09005 * 109.47014 * 194.03122 * 14 13 12 43 43 H 1.08999 * 109.47636 * 314.02647 * 14 13 12 44 44 H 0.97005 * 119.99383 * 0.02562 * 17 15 14 45 45 H 0.96996 * 120.00251 * 179.97438 * 21 20 18 46 46 H 1.09006 * 115.54793 * 274.41671 * 26 2 1 47 47 H 1.08998 * 117.49674 * 359.97438 * 27 26 2 48 48 H 1.09005 * 117.49848 * 145.01885 * 27 26 2 49 49 H 1.08998 * 117.49744 * 214.97956 * 28 26 2 50 50 H 1.08997 * 117.50243 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5469 -0.7068 1.2575 6 8 4.1544 -0.2635 0.3061 7 7 4.2196 -1.1868 2.3223 8 6 5.6846 -1.1783 2.3278 9 6 6.1930 -1.7795 3.6397 10 1 6.1067 -2.8658 3.6669 11 6 7.5792 -1.2643 4.0517 12 6 6.9754 -1.2804 5.4630 13 7 5.6490 -1.1167 4.8396 14 6 4.6481 -1.9644 5.5011 15 6 4.2964 -1.3733 6.8419 16 8 4.8277 -0.3471 7.2105 17 7 3.3916 -1.9850 7.6317 18 6 3.0713 -1.4469 8.8513 19 1 3.5443 -0.5332 9.1795 20 6 2.1389 -2.0778 9.6657 21 7 1.5636 -3.1899 9.2666 22 14 1.7029 -1.3452 11.3278 23 1 1.1481 0.0191 11.1372 24 1 0.6907 -2.2017 11.9962 25 1 2.9230 -1.2700 12.1709 26 6 2.0400 -0.7211 -1.2493 27 6 3.0763 0.0041 -2.1101 28 6 1.6374 -0.1481 -2.6096 29 1 -0.3633 0.5865 0.8439 30 1 -0.3633 0.4376 -0.9299 31 1 -0.3634 -1.0240 0.0860 32 1 2.9703 1.4236 0.0004 33 1 1.6865 -1.7523 1.2432 34 1 1.6669 -0.2144 2.1391 35 1 3.7337 -1.5411 3.0834 36 1 6.0545 -1.7692 1.4899 37 1 6.0423 -0.1529 2.2353 38 1 8.3849 -1.9832 3.9027 39 1 7.8141 -0.2677 3.6781 40 1 7.2763 -0.4292 6.0737 41 1 7.0985 -2.2332 5.9781 42 1 3.7525 -2.0195 4.8821 43 1 5.0553 -2.9658 5.6409 44 1 2.9670 -2.8059 7.3370 45 1 0.9129 -3.6305 9.8353 46 1 2.1253 -1.8045 -1.1648 47 1 3.3945 0.9951 -1.7866 48 1 3.8432 -0.6022 -2.5923 49 1 1.4582 -0.8545 -3.4202 50 1 1.0088 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323213966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:17 Heat of formation + Delta-G solvation = -84.883763 kcal Electronic energy + Delta-G solvation = -30260.394171 eV Core-core repulsion = 26095.636643 eV Total energy + Delta-G solvation = -4164.757527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.72489 -41.13140 -39.63915 -39.05497 -35.98130 -35.90399 -35.43084 -33.34813 -33.20167 -32.05830 -30.13389 -28.26446 -27.55074 -25.36545 -24.58230 -23.74021 -23.08360 -21.64458 -21.09161 -20.86327 -20.54552 -19.92220 -18.27083 -17.94941 -17.76626 -17.29308 -17.13831 -16.60852 -16.45864 -16.30294 -16.12071 -15.64910 -15.43765 -15.29199 -14.94501 -14.71083 -14.22914 -13.89328 -13.81379 -13.67556 -13.53803 -13.38444 -13.12230 -13.03647 -12.93460 -12.80561 -12.68736 -12.46125 -12.37703 -12.19183 -12.14715 -11.96500 -11.91727 -11.63768 -11.48985 -11.32252 -11.15884 -10.77080 -10.45865 -10.33668 -10.02392 -9.99081 -9.75810 -8.47748 -5.95948 1.38187 1.40961 1.50993 1.67713 2.03462 2.20595 2.28198 2.83249 2.97790 3.18489 3.27910 3.31127 3.56357 3.67072 3.79203 3.82487 3.83016 4.07239 4.15675 4.20012 4.22992 4.26921 4.35905 4.41422 4.44480 4.48797 4.53286 4.66809 4.69416 4.75691 4.85305 4.86410 4.90749 4.94010 4.98513 5.00537 5.17002 5.20847 5.30960 5.32908 5.34223 5.38149 5.40364 5.54279 5.91772 6.09767 6.53893 6.59580 6.73657 7.12354 7.27387 7.55304 8.11719 8.69196 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.002651 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.503094 B =10560.985474 C =12424.132489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.172 3.828 3 O -0.578 6.578 4 C -0.169 4.169 5 C 0.511 3.489 6 O -0.559 6.559 7 N -0.719 5.719 8 C 0.145 3.855 9 C 0.016 3.984 10 H 0.105 0.895 11 C -0.116 4.116 12 C 0.002 3.998 13 N -0.465 5.465 14 C 0.022 3.978 15 C 0.440 3.560 16 O -0.620 6.620 17 N -0.572 5.572 18 C -0.333 4.333 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.918 5.918 22 Si 0.988 3.012 23 H -0.274 1.274 24 H -0.269 1.269 25 H -0.273 1.273 26 C -0.170 4.170 27 C -0.149 4.149 28 C -0.175 4.175 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.381 0.619 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.403 0.597 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.107 0.893 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.102 0.898 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.798 -3.338 -20.494 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.131 3.869 3 O -0.389 6.389 4 C -0.209 4.209 5 C 0.299 3.701 6 O -0.440 6.440 7 N -0.370 5.370 8 C 0.021 3.979 9 C -0.094 4.094 10 H 0.123 0.877 11 C -0.154 4.154 12 C -0.127 4.127 13 N -0.188 5.188 14 C -0.110 4.110 15 C 0.227 3.773 16 O -0.506 6.506 17 N -0.210 5.210 18 C -0.462 4.462 19 H 0.094 0.906 20 C -0.210 4.210 21 N -0.559 5.559 22 Si 0.812 3.188 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.188 4.188 27 C -0.186 4.186 28 C -0.212 4.212 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.233 0.767 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.239 0.761 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.125 0.875 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.121 0.879 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.467 -1.695 -20.844 21.058 hybrid contribution 0.146 -1.092 1.646 1.981 sum 2.613 -2.786 -19.198 19.574 Atomic orbital electron populations 1.21780 0.91044 1.03667 1.02881 1.20513 0.94712 0.80998 0.90675 1.86432 1.28472 1.27126 1.96830 1.22515 0.91617 1.05398 1.01410 1.20904 0.90638 0.76674 0.81922 1.90636 1.70835 1.47340 1.35142 1.46036 1.07755 1.63391 1.19842 1.21285 0.79467 1.01007 0.96145 1.23843 0.95583 0.99113 0.90826 0.87693 1.23135 0.95483 1.03196 0.93541 1.23616 0.90028 1.01192 0.97819 1.68871 1.04535 1.40996 1.04369 1.22432 0.99264 0.96155 0.93136 1.20732 0.82516 0.86244 0.87780 1.90514 1.56616 1.27213 1.76209 1.41911 1.37578 1.24991 1.16493 1.19564 1.22879 1.09015 0.94779 0.90640 1.25960 0.95893 0.96197 1.02924 1.69644 1.28576 1.17987 1.39669 0.85060 0.78184 0.78127 0.77421 1.19917 1.19391 1.19808 1.22826 1.04955 0.99204 0.91815 1.22609 0.91883 1.01536 1.02610 1.23040 0.98343 1.03079 0.96740 0.92227 0.91627 0.88987 0.76675 0.85457 0.88136 0.76115 0.89920 0.92418 0.87411 0.88741 0.92181 0.91169 0.87526 0.90003 0.76929 0.91266 0.87479 0.89916 0.89603 0.87938 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.75 71.98 0.63 -1.65 16 2 C 0.17 3.41 0.92 -10.80 -0.01 3.40 16 3 O -0.58 -14.67 12.10 -132.77 -1.61 -16.28 16 4 C -0.17 -3.07 4.96 29.85 0.15 -2.92 16 5 C 0.51 11.17 7.32 87.66 0.64 11.81 16 6 O -0.56 -14.34 11.37 13.19 0.15 -14.19 16 7 N -0.72 -14.72 5.46 -463.06 -2.53 -17.25 16 8 C 0.15 2.86 5.81 86.38 0.50 3.36 16 9 C 0.02 0.30 3.25 42.19 0.14 0.44 16 10 H 0.11 1.60 7.77 -2.38 -0.02 1.59 16 11 C -0.12 -2.12 8.00 30.94 0.25 -1.87 16 12 C 0.00 0.07 6.71 83.58 0.56 0.63 16 13 N -0.46 -13.38 5.63 -906.70 -5.10 -18.49 16 14 C 0.02 0.67 5.07 85.56 0.43 1.10 16 15 C 0.44 20.02 7.62 87.66 0.67 20.69 16 16 O -0.62 -33.72 15.34 -3.09 -0.05 -33.77 16 17 N -0.57 -28.19 5.29 -306.99 -1.62 -29.81 16 18 C -0.33 -18.50 9.68 84.04 0.81 -17.69 16 19 H 0.08 4.52 7.16 -2.91 -0.02 4.50 16 20 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 21 N -0.92 -48.10 13.05 21.66 0.28 -47.81 16 22 Si 0.99 42.28 29.55 68.60 2.03 44.31 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 C -0.17 -3.18 4.03 -10.79 -0.04 -3.22 16 27 C -0.15 -3.08 7.93 30.62 0.24 -2.84 16 28 C -0.18 -3.07 9.62 30.62 0.29 -2.77 16 29 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.06 1.09 7.14 -2.38 -0.02 1.08 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.38 9.92 5.33 -74.06 -0.39 9.53 16 33 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.40 7.89 6.22 -92.71 -0.58 7.32 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.34 7.88 -2.39 -0.02 1.33 16 38 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 39 H 0.09 1.78 7.94 -2.39 -0.02 1.76 16 40 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 41 H 0.07 1.84 7.70 -2.38 -0.02 1.82 16 42 H 0.11 2.75 6.33 -2.38 -0.02 2.73 16 43 H 0.08 2.13 7.56 -2.39 -0.02 2.11 16 44 H 0.40 18.31 7.90 -92.70 -0.73 17.58 16 45 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 46 H 0.11 1.84 8.11 -2.38 -0.02 1.82 16 47 H 0.08 1.94 6.29 -2.39 -0.02 1.92 16 48 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 49 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.09 1.65 7.59 -2.39 -0.02 1.63 16 Total: -1.00 -70.19 396.77 -3.44 -73.63 By element: Atomic # 1 Polarization: 51.96 SS G_CDS: -0.73 Total: 51.23 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 5.73 Total: 8.43 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -8.97 Total: -113.37 kcal Atomic # 8 Polarization: -62.73 SS G_CDS: -1.50 Total: -64.24 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -70.19 -3.44 -73.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323213966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.253 kcal (2) G-P(sol) polarization free energy of solvation -70.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds