Wall clock time and date at job start Tue Mar 31 2020 23:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42898 * 109.47186 * 2 1 4 4 C 1.53008 * 109.46968 * 119.99439 * 2 1 3 5 5 C 1.50694 * 109.47051 * 178.35122 * 4 2 1 6 6 O 1.21277 * 120.00493 * 5.50708 * 5 4 2 7 7 N 1.34782 * 119.99587 * 185.50718 * 5 4 2 8 8 C 1.46503 * 119.99851 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47138 * 179.97438 * 8 7 5 10 10 H 1.09005 * 112.95774 * 287.13595 * 9 8 7 11 11 C 1.53943 * 113.75991 * 155.49635 * 9 8 7 12 12 C 1.53936 * 86.33636 * 221.96061 * 11 9 8 13 13 N 1.47952 * 86.18565 * 23.71750 * 12 11 9 14 14 C 1.46901 * 111.00429 * 222.41824 * 13 12 11 15 15 C 1.50701 * 109.47008 * 269.36189 * 14 13 12 16 16 O 1.21292 * 119.99894 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99941 * 180.02562 * 15 14 13 18 18 C 1.37093 * 119.99925 * 179.97438 * 17 15 14 19 19 H 1.08005 * 120.00020 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00314 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00599 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99717 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47151 * 89.99931 * 22 20 18 24 24 H 1.48497 * 109.47199 * 210.00080 * 22 20 18 25 25 H 1.48495 * 109.47238 * 330.00130 * 22 20 18 26 26 C 1.52998 * 109.47705 * 239.99394 * 2 1 3 27 27 C 1.52997 * 117.49584 * 351.25552 * 26 2 1 28 28 C 1.53001 * 117.49385 * 59.91224 * 26 2 1 29 29 H 1.09010 * 109.47281 * 185.30192 * 1 2 3 30 30 H 1.08996 * 109.48024 * 305.30387 * 1 2 3 31 31 H 1.09001 * 109.47328 * 65.30717 * 1 2 3 32 32 H 0.96703 * 114.00106 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47067 * 298.35554 * 4 2 1 34 34 H 1.08998 * 109.46961 * 58.34645 * 4 2 1 35 35 H 0.96998 * 120.00294 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.46922 * 300.00279 * 8 7 5 37 37 H 1.09004 * 109.47292 * 59.99191 * 8 7 5 38 38 H 1.08996 * 113.72685 * 336.31710 * 11 9 8 39 39 H 1.08998 * 113.73577 * 107.49447 * 11 9 8 40 40 H 1.09002 * 113.75455 * 138.03702 * 12 11 9 41 41 H 1.09000 * 113.75691 * 269.28476 * 12 11 9 42 42 H 1.08994 * 109.46596 * 29.35666 * 14 13 12 43 43 H 1.08996 * 109.46966 * 149.36042 * 14 13 12 44 44 H 0.96994 * 120.00173 * 359.97438 * 17 15 14 45 45 H 0.96993 * 119.99850 * 180.02562 * 21 20 18 46 46 H 1.09001 * 115.55203 * 205.58937 * 26 2 1 47 47 H 1.08998 * 117.50147 * 215.00066 * 27 26 2 48 48 H 1.09002 * 117.49948 * 0.02562 * 27 26 2 49 49 H 1.08997 * 117.50236 * 359.97438 * 28 26 2 50 50 H 1.08997 * 117.49462 * 144.97848 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5463 -0.7567 1.2291 6 8 4.1552 -0.1693 0.3602 7 7 4.2170 -1.4413 2.1769 8 6 5.6815 -1.4754 2.1576 9 6 6.1876 -2.3133 3.3333 10 1 6.0749 -1.8101 4.2937 11 6 7.5866 -2.9152 3.1092 12 6 7.0264 -4.2016 3.7425 13 7 5.6948 -3.7084 3.3271 14 6 4.7005 -3.9202 4.3875 15 6 4.0448 -5.2641 4.2001 16 8 4.3731 -5.9752 3.2739 17 7 3.0928 -5.6753 5.0609 18 6 2.4959 -6.8976 4.8901 19 1 2.7883 -7.5308 4.0655 20 6 1.5149 -7.3219 5.7779 21 7 0.9430 -8.4937 5.6145 22 14 1.0087 -6.2264 7.2038 23 1 -0.1079 -5.3447 6.7785 24 1 0.5671 -7.0698 8.3435 25 1 2.1647 -5.3938 7.6230 26 6 2.0401 -0.7213 -1.2491 27 6 1.0110 -1.4567 -2.1099 28 6 1.6341 -0.1509 -2.6095 29 1 -0.3634 -1.0234 0.0950 30 1 -0.3635 0.5938 0.8386 31 1 -0.3634 0.4293 -0.9337 32 1 2.9703 1.4236 -0.0004 33 1 1.7008 -0.1905 2.1390 34 1 1.6525 -1.7399 1.2644 35 1 3.7301 -1.9107 2.8721 36 1 6.0223 -1.9184 1.2218 37 1 6.0697 -0.4603 2.2414 38 1 7.8540 -3.0242 2.0581 39 1 8.3692 -2.4384 3.6994 40 1 7.3360 -5.1134 3.2317 41 1 7.1601 -4.2533 4.8230 42 1 5.1934 -3.8888 5.3591 43 1 3.9443 -3.1368 4.3382 44 1 2.8300 -5.1065 5.8013 45 1 0.2580 -8.7897 6.2341 46 1 3.0330 -1.1629 -1.1644 47 1 1.3268 -2.3820 -2.5916 48 1 -0.0296 -1.4262 -1.7866 49 1 1.0033 0.7380 -2.6146 50 1 2.3602 -0.2168 -3.4197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323213967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:22 Heat of formation + Delta-G solvation = -55.337463 kcal Electronic energy + Delta-G solvation = -30416.465771 eV Core-core repulsion = 26252.989467 eV Total energy + Delta-G solvation = -4163.476304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.71314 -40.09208 -38.37770 -37.93941 -35.46183 -34.62797 -34.00269 -32.03695 -31.77240 -30.89037 -29.25121 -27.54690 -25.97901 -24.02756 -23.61171 -23.06929 -22.38105 -20.81294 -19.89999 -19.58341 -19.44943 -18.43090 -17.32975 -16.94597 -16.59691 -16.31825 -15.85254 -15.62579 -15.48056 -15.19564 -14.89400 -14.66796 -14.20392 -14.06431 -13.63457 -13.34263 -13.28307 -13.03879 -12.86102 -12.66191 -12.57880 -12.36556 -12.24313 -12.15221 -11.94654 -11.68903 -11.49077 -11.37760 -11.22567 -11.06412 -10.96985 -10.83949 -10.65876 -10.56696 -10.21127 -10.02789 -9.93139 -9.80397 -9.62061 -9.16287 -8.93166 -8.38072 -8.23237 -6.35864 -3.87674 2.48448 2.95888 2.98268 3.00699 3.09932 3.64494 3.66278 3.72997 4.04592 4.25105 4.32400 4.38772 4.56603 4.58190 4.64947 4.66928 4.85195 4.91682 4.98578 5.06869 5.08847 5.17258 5.24697 5.25867 5.30032 5.38735 5.42771 5.48435 5.52645 5.58633 5.62862 5.69193 5.74472 5.78000 5.78388 5.86907 5.89176 6.01302 6.05940 6.08182 6.19997 6.27369 6.41912 6.97465 7.33652 7.52529 7.68218 8.08762 8.10273 8.54876 8.90453 9.36858 9.77996 10.77298 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008964 B = 0.003245 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.761946 B = 8626.756636 C =10594.347592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.182 3.818 3 O -0.562 6.562 4 C -0.173 4.173 5 C 0.520 3.480 6 O -0.548 6.548 7 N -0.718 5.718 8 C 0.143 3.857 9 C 0.006 3.994 10 H 0.083 0.917 11 C -0.133 4.133 12 C 0.010 3.990 13 N -0.441 5.441 14 C 0.006 3.994 15 C 0.453 3.547 16 O -0.554 6.554 17 N -0.593 5.593 18 C -0.305 4.305 19 H 0.119 0.881 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.271 1.271 26 C -0.180 4.180 27 C -0.184 4.184 28 C -0.166 4.166 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.386 0.614 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.402 0.598 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.369 0.631 45 H 0.274 0.726 46 H 0.115 0.885 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.214 19.122 -4.865 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.141 3.859 3 O -0.373 6.373 4 C -0.213 4.213 5 C 0.307 3.693 6 O -0.428 6.428 7 N -0.369 5.369 8 C 0.019 3.981 9 C -0.104 4.104 10 H 0.101 0.899 11 C -0.171 4.171 12 C -0.118 4.118 13 N -0.164 5.164 14 C -0.126 4.126 15 C 0.238 3.762 16 O -0.434 6.434 17 N -0.233 5.233 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.198 4.198 27 C -0.221 4.221 28 C -0.203 4.203 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.239 0.761 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.237 0.763 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.201 0.799 45 H 0.084 0.916 46 H 0.133 0.867 47 H 0.111 0.889 48 H 0.118 0.882 49 H 0.113 0.887 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.767 18.725 -6.613 20.422 hybrid contribution 0.082 0.442 2.584 2.622 sum 4.848 19.167 -4.030 20.177 Atomic orbital electron populations 1.21896 0.92552 1.02596 1.03064 1.20210 0.93721 0.81860 0.90103 1.86396 1.28977 1.25145 1.96794 1.22498 0.92545 1.04577 1.01695 1.20607 0.89969 0.77916 0.80774 1.90566 1.70275 1.45569 1.36414 1.45963 1.07686 1.52671 1.30568 1.21275 0.79511 0.98959 0.98401 1.23835 0.96176 0.92076 0.98347 0.89887 1.23331 0.94906 0.96124 1.02749 1.23867 0.89589 0.99079 0.99300 1.68432 1.04475 1.04900 1.38570 1.22573 0.97091 0.98376 0.94608 1.19524 0.83409 0.88048 0.85197 1.90582 1.64340 1.56186 1.32299 1.42223 1.36026 1.18596 1.26435 1.19415 1.17062 0.93008 1.13877 0.86316 1.25033 0.96755 0.96290 0.98042 1.69618 1.26248 1.18581 1.37618 0.86687 0.79221 0.80748 0.82775 1.19590 1.20164 1.19637 1.23144 1.00465 1.04086 0.92115 1.23158 0.98696 0.96186 1.04094 1.22793 1.03528 0.97206 0.96732 0.90616 0.91701 0.91480 0.76148 0.87887 0.87549 0.76297 0.90610 0.91093 0.88737 0.90726 0.88695 0.91275 0.92102 0.90170 0.79864 0.91583 0.86720 0.88901 0.88169 0.88727 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.44 37.15 0.28 -1.08 16 2 C 0.18 2.01 0.92 -90.62 -0.08 1.92 16 3 O -0.56 -7.02 12.87 -53.84 -0.69 -7.71 16 4 C -0.17 -1.78 4.99 -27.88 -0.14 -1.92 16 5 C 0.52 6.20 7.09 -10.99 -0.08 6.12 16 6 O -0.55 -7.62 12.13 -13.05 -0.16 -7.78 16 7 N -0.72 -7.99 5.50 -60.29 -0.33 -8.32 16 8 C 0.14 1.51 5.80 -4.04 -0.02 1.49 16 9 C 0.01 0.06 3.38 -66.65 -0.23 -0.17 16 10 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 11 C -0.13 -1.23 7.84 -25.79 -0.20 -1.44 16 12 C 0.01 0.13 7.95 -2.77 -0.02 0.11 16 13 N -0.44 -6.21 5.33 -232.13 -1.24 -7.45 16 14 C 0.01 0.09 5.12 -4.97 -0.03 0.06 16 15 C 0.45 9.77 7.83 -10.99 -0.09 9.68 16 16 O -0.55 -14.51 16.01 5.55 0.09 -14.42 16 17 N -0.59 -13.46 5.09 -10.96 -0.06 -13.52 16 18 C -0.30 -8.39 10.16 -14.94 -0.15 -8.54 16 19 H 0.12 3.77 7.39 -52.48 -0.39 3.39 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.25 13.96 55.50 0.77 -24.47 16 22 Si 0.88 18.70 27.74 -169.99 -4.71 13.99 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 26 C -0.18 -2.10 4.70 -90.62 -0.43 -2.53 16 27 C -0.18 -1.90 9.57 -26.70 -0.26 -2.16 16 28 C -0.17 -1.75 9.78 -26.69 -0.26 -2.02 16 29 H 0.08 0.64 7.33 -51.92 -0.38 0.26 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.62 6.69 -51.93 -0.35 0.27 16 32 H 0.39 4.81 6.50 45.56 0.30 5.10 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.40 4.27 6.54 -40.82 -0.27 4.01 16 36 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.89 7.94 -51.93 -0.41 0.48 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.07 0.78 7.48 -51.93 -0.39 0.39 16 42 H 0.06 0.79 7.38 -51.93 -0.38 0.40 16 43 H 0.08 0.98 6.40 -51.93 -0.33 0.65 16 44 H 0.37 7.27 5.76 -40.82 -0.24 7.04 16 45 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.11 1.57 6.12 -51.93 -0.32 1.26 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.10 0.92 5.89 -51.93 -0.31 0.61 16 49 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 50 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 395.71 15.07 5.96 5.96 Total: -1.00 -33.62 395.71 -9.39 -43.01 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -7.23 Total: 20.14 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.80 Total: 0.56 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.85 Total: -53.76 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.76 Total: -29.91 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.99 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.62 -9.39 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323213967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.323 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds