Wall clock time and date at job start Tue Mar 31 2020 23:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47311 * 2 1 4 4 H 1.09008 * 110.54228 * 52.37817 * 3 2 1 5 5 C 1.54811 * 110.48886 * 289.76478 * 3 2 1 6 6 C 1.54991 * 102.09412 * 220.44654 * 5 3 2 7 7 O 1.44374 * 103.49161 * 37.02047 * 6 5 3 8 8 C 1.43747 * 106.97502 * 319.93852 * 7 6 5 9 9 H 1.08998 * 109.87907 * 266.94089 * 8 7 6 10 10 C 1.50700 * 109.87547 * 145.93590 * 8 7 6 11 11 O 1.21276 * 120.00099 * 356.45890 * 10 8 7 12 12 N 1.34781 * 119.99723 * 176.45484 * 10 8 7 13 13 C 1.46497 * 119.99562 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47256 * 180.02562 * 13 12 10 15 15 H 1.09002 * 112.74395 * 75.76543 * 14 13 12 16 16 C 1.53508 * 113.48267 * 206.62027 * 14 13 12 17 17 C 1.53511 * 83.57648 * 140.78728 * 16 14 13 18 18 N 1.47477 * 113.47278 * 305.00309 * 14 13 12 19 19 C 1.46902 * 111.00193 * 106.52665 * 18 14 13 20 20 C 1.50703 * 109.47332 * 169.99721 * 19 18 14 21 21 O 1.21288 * 119.99735 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99823 * 180.02562 * 20 19 18 23 23 C 1.37099 * 119.99952 * 180.02562 * 22 20 19 24 24 H 1.08006 * 119.99824 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00239 * 179.97438 * 23 22 20 26 26 N 1.31412 * 119.99846 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00119 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47297 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47261 * 239.99930 * 27 25 23 30 30 H 1.48500 * 109.47454 * 119.99923 * 27 25 23 31 31 H 1.09003 * 109.47744 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47161 * 300.00330 * 1 2 3 33 33 H 1.09007 * 109.46752 * 59.99864 * 1 2 3 34 34 H 1.09001 * 109.47161 * 239.99670 * 2 1 3 35 35 H 1.09002 * 109.46348 * 119.99551 * 2 1 3 36 36 H 1.09000 * 110.90933 * 102.24316 * 5 3 2 37 37 H 1.09011 * 110.93691 * 338.65913 * 5 3 2 38 38 H 1.09007 * 110.61294 * 278.51604 * 6 5 3 39 39 H 1.09002 * 110.75633 * 155.59237 * 6 5 3 40 40 H 0.96996 * 120.00329 * 359.97438 * 12 10 8 41 41 H 1.08996 * 109.47661 * 60.00429 * 13 12 10 42 42 H 1.09002 * 109.47407 * 299.99851 * 13 12 10 43 43 H 1.08999 * 114.17017 * 254.43633 * 16 14 13 44 44 H 1.08999 * 114.16890 * 27.14158 * 16 14 13 45 45 H 1.08996 * 113.47865 * 219.21199 * 17 16 14 46 46 H 1.09002 * 113.47519 * 88.74187 * 17 16 14 47 47 H 1.09005 * 109.47415 * 49.99691 * 19 18 14 48 48 H 1.09003 * 109.47295 * 290.00033 * 19 18 14 49 49 H 0.96996 * 120.00501 * 359.97438 * 22 20 19 50 50 H 0.96993 * 120.00098 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5801 2.0108 0.8085 5 6 1.7583 2.1168 -1.3647 6 6 3.0604 2.9229 -1.6036 7 8 4.0921 2.0591 -1.0801 8 6 3.5756 1.4716 0.1259 9 1 3.8678 2.0738 0.9862 10 6 4.1038 0.0686 0.2793 11 8 4.7987 -0.4160 -0.5884 12 7 3.8040 -0.6476 1.3811 13 6 4.3180 -2.0112 1.5305 14 6 3.8338 -2.5962 2.8588 15 1 2.7858 -2.8948 2.8307 16 6 4.7641 -3.6772 3.4265 17 6 4.4352 -3.0110 4.7698 18 7 4.1762 -1.7636 4.0269 19 6 2.9880 -1.0763 4.5501 20 6 3.3193 -0.4377 5.8743 21 8 4.4357 -0.5441 6.3364 22 7 2.3752 0.2518 6.5449 23 6 2.6767 0.8332 7.7493 24 1 3.6708 0.7385 8.1609 25 6 1.7036 1.5445 8.4405 26 7 0.4942 1.6602 7.9395 27 14 2.1147 2.3373 10.0811 28 1 3.5337 2.0624 10.4220 29 1 1.2347 1.7751 11.1370 30 1 1.9024 3.8042 9.9892 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8901 36 1 0.8962 2.7806 -1.3001 37 1 1.6142 1.3701 -2.1458 38 1 3.0343 3.8652 -1.0562 39 1 3.2137 3.1027 -2.6677 40 1 3.2486 -0.2598 2.0753 41 1 5.4077 -1.9924 1.5172 42 1 3.9553 -2.6284 0.7085 43 1 4.3814 -4.6929 3.3264 44 1 5.8054 -3.5752 3.1209 45 1 5.2899 -2.9459 5.4431 46 1 3.5480 -3.4212 5.2522 47 1 2.1817 -1.7971 4.6860 48 1 2.6728 -0.3075 3.8446 49 1 1.4826 0.3372 6.1752 50 1 0.2811 1.2495 7.0870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323247105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:50 Heat of formation + Delta-G solvation = -74.104635 kcal Electronic energy + Delta-G solvation = -30975.575916 eV Core-core repulsion = 26811.285807 eV Total energy + Delta-G solvation = -4164.290109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.02016 -40.30351 -38.43587 -37.92480 -35.39386 -34.41184 -34.16278 -31.46311 -30.84124 -30.57192 -30.00164 -27.93640 -25.72911 -24.26890 -23.74778 -23.43509 -22.60977 -21.38620 -20.26424 -19.81030 -19.55495 -17.99481 -17.44109 -17.01982 -16.60608 -16.24015 -16.21312 -15.55106 -15.37491 -14.92436 -14.72204 -14.68215 -14.45494 -14.11532 -13.92201 -13.75656 -13.67741 -13.42568 -13.06549 -12.83126 -12.53938 -12.41542 -12.03161 -11.89845 -11.73467 -11.54441 -11.52822 -11.42078 -11.25813 -11.02961 -10.98043 -10.96193 -10.90542 -10.59087 -10.27229 -10.25429 -9.93312 -9.61035 -9.54994 -9.00188 -8.89006 -8.40168 -8.09914 -6.81839 -3.95442 2.53506 2.81508 3.26097 3.30761 3.49665 3.71939 3.73893 3.89195 4.07393 4.20749 4.30702 4.35493 4.48261 4.64868 4.69416 4.77993 4.86499 4.90086 4.91210 5.06521 5.11009 5.13797 5.15621 5.25841 5.29153 5.33851 5.34663 5.41803 5.47271 5.50379 5.55458 5.60103 5.69496 5.72483 5.76770 5.79310 5.85411 5.88293 5.99480 6.01129 6.12074 6.29652 6.44369 6.53106 7.04081 7.39071 7.73982 8.01714 8.14923 8.52333 8.72834 9.39893 9.79727 10.61549 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009835 B = 0.003262 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.206987 B = 8582.593685 C =10249.715457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C -0.114 4.114 4 H 0.096 0.904 5 C -0.147 4.147 6 C 0.043 3.957 7 O -0.347 6.347 8 C 0.059 3.941 9 H 0.096 0.904 10 C 0.521 3.479 11 O -0.525 6.525 12 N -0.720 5.720 13 C 0.142 3.858 14 C 0.004 3.996 15 H 0.082 0.918 16 C -0.135 4.135 17 C 0.013 3.987 18 N -0.436 5.436 19 C 0.008 3.992 20 C 0.446 3.554 21 O -0.568 6.568 22 N -0.576 5.576 23 C -0.382 4.382 24 H 0.100 0.900 25 C -0.008 4.008 26 N -0.901 5.901 27 Si 1.095 2.905 28 H -0.283 1.283 29 H -0.284 1.284 30 H -0.283 1.283 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.401 0.599 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.081 0.919 49 H 0.374 0.626 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -4.520 -17.168 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.133 4.133 4 H 0.114 0.886 5 C -0.185 4.185 6 C -0.034 4.034 7 O -0.265 6.265 8 C -0.002 4.002 9 H 0.114 0.886 10 C 0.307 3.693 11 O -0.400 6.400 12 N -0.375 5.375 13 C 0.018 3.982 14 C -0.107 4.107 15 H 0.100 0.900 16 C -0.173 4.173 17 C -0.116 4.116 18 N -0.158 5.158 19 C -0.124 4.124 20 C 0.231 3.769 21 O -0.451 6.451 22 N -0.214 5.214 23 C -0.511 4.511 24 H 0.118 0.882 25 C -0.211 4.211 26 N -0.541 5.541 27 Si 0.921 3.079 28 H -0.209 1.209 29 H -0.210 1.210 30 H -0.210 1.210 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.238 0.762 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.099 0.901 49 H 0.207 0.793 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.912 -3.502 -16.344 16.740 hybrid contribution -1.256 -1.024 -0.912 1.859 sum -2.168 -4.526 -17.256 17.971 Atomic orbital electron populations 1.21765 0.95042 1.01902 1.02024 1.22064 0.96790 0.94886 1.03664 1.22594 0.93072 0.98353 0.99319 0.88571 1.23224 0.98650 0.99859 0.96733 1.23641 0.86268 0.93343 1.00121 1.89001 1.37689 1.61067 1.38712 1.22760 0.93791 0.92841 0.90807 0.88602 1.20253 0.80153 0.87075 0.81862 1.90700 1.37063 1.71247 1.41018 1.46109 1.53804 1.16019 1.21598 1.21323 0.99841 0.81739 0.95328 1.23822 0.99458 0.94722 0.92664 0.89972 1.23195 1.00408 0.97205 0.96502 1.23591 1.02370 0.89292 0.96330 1.68892 1.28514 1.15356 1.03061 1.22544 0.93103 0.99282 0.97474 1.19510 0.86260 0.84595 0.86551 1.90548 1.21649 1.63483 1.69405 1.41945 1.11484 1.47671 1.20303 1.20606 1.01349 1.32240 0.96879 0.88229 1.26493 0.92564 0.96711 1.05286 1.70856 1.19998 1.43383 1.19839 0.83067 0.75471 0.76257 0.73124 1.20886 1.20998 1.20957 0.92542 0.92328 0.92718 0.91429 0.90091 0.89740 0.90128 0.91748 0.88574 0.76206 0.90674 0.91162 0.90414 0.88523 0.88813 0.91583 0.92544 0.90078 0.79284 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.79 37.16 0.36 -0.79 16 2 C -0.14 -1.23 4.15 -26.73 -0.11 -1.34 16 3 C -0.11 -1.04 3.04 -89.10 -0.27 -1.31 16 4 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 5 C -0.15 -1.17 6.03 -24.73 -0.15 -1.31 16 6 C 0.04 0.39 7.72 38.21 0.29 0.68 16 7 O -0.35 -4.69 10.74 -54.80 -0.59 -5.27 16 8 C 0.06 0.71 3.84 -27.31 -0.10 0.61 16 9 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 10 C 0.52 7.28 5.66 -10.98 -0.06 7.22 16 11 O -0.53 -9.32 16.53 -14.01 -0.23 -9.55 16 12 N -0.72 -8.64 3.66 -60.29 -0.22 -8.86 16 13 C 0.14 1.63 5.81 -4.04 -0.02 1.61 16 14 C 0.00 0.04 3.26 -71.44 -0.23 -0.19 16 15 H 0.08 0.79 7.77 -51.93 -0.40 0.38 16 16 C -0.13 -1.40 8.00 -26.20 -0.21 -1.61 16 17 C 0.01 0.18 6.71 -7.55 -0.05 0.13 16 18 N -0.44 -6.53 5.63 -237.95 -1.34 -7.87 16 19 C 0.01 0.13 5.07 -4.97 -0.03 0.11 16 20 C 0.45 10.00 7.62 -10.98 -0.08 9.92 16 21 O -0.57 -15.04 15.34 5.55 0.09 -14.96 16 22 N -0.58 -13.81 5.28 -10.96 -0.06 -13.87 16 23 C -0.38 -10.42 9.68 -14.93 -0.14 -10.56 16 24 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 25 C -0.01 -0.21 5.50 -17.47 -0.10 -0.31 16 26 N -0.90 -24.45 13.68 55.50 0.76 -23.69 16 27 Si 1.09 23.85 29.92 -169.99 -5.09 18.76 16 28 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 29 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 30 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.38 7.63 -51.92 -0.40 -0.01 16 34 H 0.07 0.71 7.70 -51.93 -0.40 0.31 16 35 H 0.08 0.75 4.87 -51.93 -0.25 0.50 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.66 7.77 -51.92 -0.40 0.26 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.40 4.51 5.32 -40.82 -0.22 4.29 16 41 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 45 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 46 H 0.07 0.90 7.70 -51.93 -0.40 0.50 16 47 H 0.06 0.79 7.56 -51.93 -0.39 0.40 16 48 H 0.08 1.12 6.33 -51.93 -0.33 0.79 16 49 H 0.37 8.21 6.73 -40.82 -0.27 7.93 16 50 H 0.26 6.75 6.77 -40.82 -0.28 6.47 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -35.14 394.52 -9.60 -44.75 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -7.96 Total: 11.78 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.90 Total: 2.84 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.86 Total: -54.30 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.73 Total: -29.78 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.09 Total: 18.76 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.14 -9.60 -44.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323247105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.356 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds