Wall clock time and date at job start Tue Mar 31 2020 23:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47311 * 2 1 4 4 H 1.09008 * 110.54228 * 52.37817 * 3 2 1 5 5 C 1.54811 * 110.48886 * 289.76478 * 3 2 1 6 6 C 1.54991 * 102.09412 * 220.44654 * 5 3 2 7 7 O 1.44374 * 103.49161 * 37.02047 * 6 5 3 8 8 C 1.43747 * 106.97502 * 319.93852 * 7 6 5 9 9 H 1.08998 * 109.87907 * 266.94089 * 8 7 6 10 10 C 1.50700 * 109.87547 * 145.93590 * 8 7 6 11 11 O 1.21276 * 120.00099 * 356.45890 * 10 8 7 12 12 N 1.34781 * 119.99723 * 176.45484 * 10 8 7 13 13 C 1.46497 * 119.99562 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47256 * 180.02562 * 13 12 10 15 15 H 1.09002 * 112.74395 * 75.76543 * 14 13 12 16 16 C 1.53508 * 113.48267 * 206.62027 * 14 13 12 17 17 C 1.53511 * 83.57648 * 140.78728 * 16 14 13 18 18 N 1.47477 * 113.47278 * 305.00309 * 14 13 12 19 19 C 1.46902 * 111.00193 * 106.52665 * 18 14 13 20 20 C 1.50703 * 109.47332 * 169.99721 * 19 18 14 21 21 O 1.21288 * 119.99735 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99823 * 180.02562 * 20 19 18 23 23 C 1.37099 * 119.99952 * 180.02562 * 22 20 19 24 24 H 1.08006 * 119.99824 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00239 * 179.97438 * 23 22 20 26 26 N 1.31412 * 119.99846 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00119 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47297 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47261 * 239.99930 * 27 25 23 30 30 H 1.48500 * 109.47454 * 119.99923 * 27 25 23 31 31 H 1.09003 * 109.47744 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47161 * 300.00330 * 1 2 3 33 33 H 1.09007 * 109.46752 * 59.99864 * 1 2 3 34 34 H 1.09001 * 109.47161 * 239.99670 * 2 1 3 35 35 H 1.09002 * 109.46348 * 119.99551 * 2 1 3 36 36 H 1.09000 * 110.90933 * 102.24316 * 5 3 2 37 37 H 1.09011 * 110.93691 * 338.65913 * 5 3 2 38 38 H 1.09007 * 110.61294 * 278.51604 * 6 5 3 39 39 H 1.09002 * 110.75633 * 155.59237 * 6 5 3 40 40 H 0.96996 * 120.00329 * 359.97438 * 12 10 8 41 41 H 1.08996 * 109.47661 * 60.00429 * 13 12 10 42 42 H 1.09002 * 109.47407 * 299.99851 * 13 12 10 43 43 H 1.08999 * 114.17017 * 254.43633 * 16 14 13 44 44 H 1.08999 * 114.16890 * 27.14158 * 16 14 13 45 45 H 1.08996 * 113.47865 * 219.21199 * 17 16 14 46 46 H 1.09002 * 113.47519 * 88.74187 * 17 16 14 47 47 H 1.09005 * 109.47415 * 49.99691 * 19 18 14 48 48 H 1.09003 * 109.47295 * 290.00033 * 19 18 14 49 49 H 0.96996 * 120.00501 * 359.97438 * 22 20 19 50 50 H 0.96993 * 120.00098 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5801 2.0108 0.8085 5 6 1.7583 2.1168 -1.3647 6 6 3.0604 2.9229 -1.6036 7 8 4.0921 2.0591 -1.0801 8 6 3.5756 1.4716 0.1259 9 1 3.8678 2.0738 0.9862 10 6 4.1038 0.0686 0.2793 11 8 4.7987 -0.4160 -0.5884 12 7 3.8040 -0.6476 1.3811 13 6 4.3180 -2.0112 1.5305 14 6 3.8338 -2.5962 2.8588 15 1 2.7858 -2.8948 2.8307 16 6 4.7641 -3.6772 3.4265 17 6 4.4352 -3.0110 4.7698 18 7 4.1762 -1.7636 4.0269 19 6 2.9880 -1.0763 4.5501 20 6 3.3193 -0.4377 5.8743 21 8 4.4357 -0.5441 6.3364 22 7 2.3752 0.2518 6.5449 23 6 2.6767 0.8332 7.7493 24 1 3.6708 0.7385 8.1609 25 6 1.7036 1.5445 8.4405 26 7 0.4942 1.6602 7.9395 27 14 2.1147 2.3373 10.0811 28 1 3.5337 2.0624 10.4220 29 1 1.2347 1.7751 11.1370 30 1 1.9024 3.8042 9.9892 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8901 36 1 0.8962 2.7806 -1.3001 37 1 1.6142 1.3701 -2.1458 38 1 3.0343 3.8652 -1.0562 39 1 3.2137 3.1027 -2.6677 40 1 3.2486 -0.2598 2.0753 41 1 5.4077 -1.9924 1.5172 42 1 3.9553 -2.6284 0.7085 43 1 4.3814 -4.6929 3.3264 44 1 5.8054 -3.5752 3.1209 45 1 5.2899 -2.9459 5.4431 46 1 3.5480 -3.4212 5.2522 47 1 2.1817 -1.7971 4.6860 48 1 2.6728 -0.3075 3.8446 49 1 1.4826 0.3372 6.1752 50 1 0.2811 1.2495 7.0870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323247105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:48 Heat of formation + Delta-G solvation = -100.572333 kcal Electronic energy + Delta-G solvation = -30976.723641 eV Core-core repulsion = 26811.285807 eV Total energy + Delta-G solvation = -4165.437835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -42.01062 -41.37014 -39.81859 -39.29891 -36.39323 -36.25514 -35.13796 -33.25586 -32.13696 -31.39690 -30.87265 -28.86898 -27.35109 -25.39046 -25.08509 -24.25093 -23.42069 -22.26591 -21.52677 -21.19432 -20.52125 -19.96828 -18.40536 -18.13022 -17.82419 -17.43065 -17.36270 -16.57141 -16.47787 -16.27270 -15.95524 -15.72204 -15.50012 -15.45373 -15.28473 -15.14682 -14.51210 -14.36991 -14.30507 -13.92301 -13.57771 -13.34967 -13.19771 -13.09400 -12.84314 -12.76884 -12.61924 -12.43092 -12.25068 -12.12796 -12.00831 -11.97719 -11.87695 -11.71993 -11.64859 -11.58043 -11.49724 -11.14521 -10.56294 -10.40086 -10.09376 -10.01868 -9.82204 -8.91575 -6.05675 1.48042 1.52039 1.54256 1.80927 1.86763 2.00877 2.38240 2.70824 2.96426 3.14160 3.18034 3.33464 3.47773 3.55699 3.64901 3.72740 3.91643 4.00525 4.06321 4.15386 4.19632 4.23790 4.28043 4.33792 4.35513 4.37863 4.42198 4.49522 4.59457 4.69464 4.78140 4.81512 4.83658 4.85811 4.94986 4.96751 5.09653 5.13850 5.14583 5.21192 5.25613 5.39625 5.40642 5.62066 5.73731 5.95110 6.00882 6.39511 6.58520 6.75894 7.11142 7.44651 7.94424 8.56599 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009835 B = 0.003262 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.206987 B = 8582.593685 C =10249.715457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C -0.111 4.111 4 H 0.113 0.887 5 C -0.140 4.140 6 C 0.035 3.965 7 O -0.383 6.383 8 C 0.054 3.946 9 H 0.100 0.900 10 C 0.519 3.481 11 O -0.570 6.570 12 N -0.710 5.710 13 C 0.142 3.858 14 C 0.018 3.982 15 H 0.111 0.889 16 C -0.116 4.116 17 C 0.003 3.997 18 N -0.467 5.467 19 C 0.021 3.979 20 C 0.444 3.556 21 O -0.614 6.614 22 N -0.585 5.585 23 C -0.408 4.408 24 H 0.068 0.932 25 C -0.038 4.038 26 N -0.916 5.916 27 Si 1.133 2.867 28 H -0.283 1.283 29 H -0.271 1.271 30 H -0.272 1.272 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.406 0.594 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.385 0.615 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 -4.775 -17.920 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C -0.129 4.129 4 H 0.131 0.869 5 C -0.178 4.178 6 C -0.041 4.041 7 O -0.302 6.302 8 C -0.007 4.007 9 H 0.118 0.882 10 C 0.306 3.694 11 O -0.449 6.449 12 N -0.364 5.364 13 C 0.018 3.982 14 C -0.091 4.091 15 H 0.129 0.871 16 C -0.154 4.154 17 C -0.125 4.125 18 N -0.190 5.190 19 C -0.111 4.111 20 C 0.232 3.768 21 O -0.499 6.499 22 N -0.225 5.225 23 C -0.538 4.538 24 H 0.087 0.913 25 C -0.236 4.236 26 N -0.555 5.555 27 Si 0.954 3.046 28 H -0.209 1.209 29 H -0.197 1.197 30 H -0.197 1.197 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.244 0.756 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.129 0.871 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.125 0.875 49 H 0.219 0.781 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.041 -3.766 -17.106 17.778 hybrid contribution -0.528 -0.979 -0.728 1.329 sum -3.569 -4.744 -17.834 18.796 Atomic orbital electron populations 1.21737 0.93685 1.02314 1.02592 1.22002 0.97850 0.94548 1.02593 1.22651 0.90834 0.98840 1.00614 0.86904 1.23218 0.98885 0.99869 0.95792 1.23903 0.85916 0.93432 1.00856 1.88964 1.39869 1.61991 1.39371 1.22895 0.95732 0.91402 0.90648 0.88250 1.20691 0.79371 0.87848 0.81532 1.90670 1.39219 1.72381 1.42649 1.46071 1.53184 1.16125 1.21054 1.21364 0.98857 0.81760 0.96231 1.23848 1.01107 0.93628 0.90528 0.87127 1.23141 1.00423 0.98569 0.93219 1.23619 1.01526 0.89870 0.97534 1.68882 1.28709 1.16573 1.04826 1.22456 0.94354 1.00349 0.93891 1.20706 0.85089 0.82935 0.88076 1.90525 1.23620 1.64634 1.71080 1.41964 1.12399 1.48245 1.19851 1.20510 1.00440 1.34018 0.98800 0.91344 1.27658 0.91971 0.96446 1.07562 1.70913 1.20306 1.44012 1.20279 0.82595 0.75471 0.76207 0.70302 1.20870 1.19672 1.19699 0.92267 0.91851 0.92022 0.93274 0.90330 0.87229 0.90611 0.90388 0.87579 0.75581 0.92560 0.89725 0.87140 0.88828 0.92159 0.90944 0.89625 0.87527 0.78056 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.79 71.98 0.70 -1.13 16 2 C -0.13 -2.12 4.15 30.59 0.13 -2.00 16 3 C -0.11 -1.79 3.04 -9.81 -0.03 -1.82 16 4 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 5 C -0.14 -1.92 6.03 31.89 0.19 -1.73 16 6 C 0.03 0.58 7.72 72.66 0.56 1.14 16 7 O -0.38 -10.32 10.74 -130.27 -1.40 -11.72 16 8 C 0.05 1.27 3.84 30.22 0.12 1.38 16 9 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 10 C 0.52 14.35 5.66 87.66 0.50 14.85 16 11 O -0.57 -20.60 16.53 15.69 0.26 -20.34 16 12 N -0.71 -16.13 3.66 -463.06 -1.70 -17.82 16 13 C 0.14 3.03 5.81 86.38 0.50 3.53 16 14 C 0.02 0.35 3.26 42.19 0.14 0.49 16 15 H 0.11 1.59 7.77 -2.39 -0.02 1.58 16 16 C -0.12 -2.12 8.00 30.94 0.25 -1.87 16 17 C 0.00 0.09 6.71 83.57 0.56 0.65 16 18 N -0.47 -13.32 5.63 -906.73 -5.10 -18.42 16 19 C 0.02 0.63 5.07 85.56 0.43 1.06 16 20 C 0.44 19.91 7.62 87.66 0.67 20.58 16 21 O -0.61 -33.33 15.34 -3.05 -0.05 -33.38 16 22 N -0.58 -28.10 5.28 -306.98 -1.62 -29.72 16 23 C -0.41 -22.67 9.68 84.04 0.81 -21.86 16 24 H 0.07 4.17 7.16 -2.91 -0.02 4.15 16 25 C -0.04 -1.98 5.50 84.93 0.47 -1.51 16 26 N -0.92 -48.95 13.68 21.66 0.30 -48.65 16 27 Si 1.13 47.65 29.92 68.60 2.05 49.70 16 28 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 29 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 30 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.69 7.63 -2.38 -0.02 0.67 16 34 H 0.05 0.98 7.70 -2.39 -0.02 0.96 16 35 H 0.08 1.27 4.87 -2.39 -0.01 1.26 16 36 H 0.11 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.12 7.77 -2.38 -0.02 1.10 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.41 8.30 5.32 -92.71 -0.49 7.81 16 41 H 0.06 1.44 7.88 -2.39 -0.02 1.42 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.09 1.80 7.94 -2.39 -0.02 1.78 16 45 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 46 H 0.07 1.84 7.70 -2.39 -0.02 1.82 16 47 H 0.09 2.09 7.56 -2.38 -0.02 2.07 16 48 H 0.11 2.62 6.33 -2.39 -0.02 2.61 16 49 H 0.39 16.62 6.73 -92.71 -0.62 15.99 16 50 H 0.26 13.33 6.77 -92.71 -0.63 12.70 16 Total: -1.00 -79.22 394.52 -1.28 -80.50 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.01 Total: 38.07 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.00 Total: 11.78 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -8.13 Total: -114.62 kcal Atomic # 8 Polarization: -64.25 SS G_CDS: -1.19 Total: -65.44 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.05 Total: 49.70 kcal Total: -79.22 -1.28 -80.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323247105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.075 kcal (2) G-P(sol) polarization free energy of solvation -79.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds