Wall clock time and date at job start Tue Mar 31 2020 23:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47474 * 2 1 4 4 H 1.08997 * 110.43632 * 52.45016 * 3 2 1 5 5 C 1.54818 * 110.48560 * 289.76555 * 3 2 1 6 6 C 1.54992 * 102.09438 * 220.44272 * 5 3 2 7 7 O 1.44382 * 103.48918 * 37.02117 * 6 5 3 8 8 C 1.43740 * 106.97798 * 319.94106 * 7 6 5 9 9 H 1.09003 * 110.00720 * 267.01754 * 8 7 6 10 10 C 1.50702 * 109.87904 * 145.93444 * 8 7 6 11 11 O 1.21283 * 120.00262 * 357.17280 * 10 8 7 12 12 N 1.34777 * 119.99928 * 176.89185 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.08992 * 112.95864 * 285.33966 * 14 13 12 16 16 C 1.53935 * 113.75999 * 153.68781 * 14 13 12 17 17 C 1.53943 * 86.33892 * 221.96523 * 16 14 13 18 18 N 1.47962 * 113.75418 * 56.98235 * 14 13 12 19 19 C 1.46906 * 111.00042 * 251.89722 * 18 14 13 20 20 C 1.50697 * 109.46940 * 170.00065 * 19 18 14 21 21 O 1.21287 * 120.00215 * 0.02562 * 20 19 18 22 22 N 1.34781 * 119.99572 * 180.02562 * 20 19 18 23 23 C 1.37099 * 119.99726 * 180.02562 * 22 20 19 24 24 H 1.07997 * 120.00246 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99684 * 179.97438 * 23 22 20 26 26 N 1.31412 * 120.00449 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99772 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47015 * 60.00411 * 27 25 23 29 29 H 1.48499 * 109.47044 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47295 * 300.00527 * 27 25 23 31 31 H 1.09000 * 109.47107 * 300.00283 * 1 2 3 32 32 H 1.09006 * 109.47073 * 60.00167 * 1 2 3 33 33 H 1.09004 * 109.47431 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47107 * 239.99717 * 2 1 3 35 35 H 1.09006 * 109.47073 * 119.99833 * 2 1 3 36 36 H 1.09003 * 110.90777 * 338.63924 * 5 3 2 37 37 H 1.08994 * 110.90581 * 102.24335 * 5 3 2 38 38 H 1.08999 * 110.62252 * 155.52408 * 6 5 3 39 39 H 1.09001 * 110.61500 * 278.36790 * 6 5 3 40 40 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 41 41 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 42 42 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 43 43 H 1.08995 * 113.73636 * 336.31903 * 16 14 13 44 44 H 1.09000 * 113.73229 * 107.61099 * 16 14 13 45 45 H 1.09003 * 113.75642 * 138.04256 * 17 16 14 46 46 H 1.08999 * 113.75832 * 269.28889 * 17 16 14 47 47 H 1.08997 * 109.47322 * 290.00844 * 19 18 14 48 48 H 1.09001 * 109.46353 * 50.00345 * 19 18 14 49 49 H 0.96997 * 120.00477 * 359.97438 * 22 20 19 50 50 H 0.96993 * 120.00119 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5801 2.0088 0.8098 5 6 1.7583 2.1168 -1.3648 6 6 3.0604 2.9229 -1.6037 7 8 4.0921 2.0591 -1.0802 8 6 3.5756 1.4716 0.1258 9 1 3.8655 2.0729 0.9874 10 6 4.1039 0.0686 0.2792 11 8 4.8095 -0.4114 -0.5826 12 7 3.7969 -0.6508 1.3768 13 6 4.3153 -2.0125 1.5289 14 6 3.8211 -2.6017 2.8516 15 1 4.3377 -2.1914 3.7191 16 6 3.7333 -4.1386 2.8515 17 6 2.3957 -3.9637 3.5932 18 7 2.3476 -2.6131 2.9854 19 6 1.8999 -1.6104 3.9613 20 6 0.4002 -1.4782 3.8935 21 8 -0.2333 -2.1531 3.1097 22 7 -0.2369 -0.6099 4.7038 23 6 -1.6013 -0.4899 4.6425 24 1 -2.1655 -1.0914 3.9452 25 6 -2.2582 0.4049 5.4783 26 7 -1.5718 1.1365 6.3271 27 14 -4.1172 0.5689 5.3943 28 1 -4.7442 -0.7405 5.7068 29 1 -4.5697 1.5829 6.3803 30 1 -4.5153 0.9949 4.0285 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 1.6146 1.3697 -2.1455 37 1 0.8962 2.7805 -1.3001 38 1 3.2121 3.1004 -2.6684 39 1 3.0331 3.8663 -1.0585 40 1 3.2325 -0.2670 2.0661 41 1 3.9631 -2.6298 0.7024 42 1 5.4051 -1.9888 1.5259 43 1 3.6299 -4.5721 1.8569 44 1 4.5062 -4.6222 3.4489 45 1 1.6090 -4.6322 3.2435 46 1 2.4936 -3.9536 4.6788 47 1 2.1922 -1.9231 4.9637 48 1 2.3602 -0.6494 3.7318 49 1 0.2696 -0.0704 5.3308 50 1 -2.0304 1.7613 6.9102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323247106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:57 Heat of formation + Delta-G solvation = -76.058760 kcal Electronic energy + Delta-G solvation = -31704.124767 eV Core-core repulsion = 27539.749921 eV Total energy + Delta-G solvation = -4164.374846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.83082 -40.01251 -38.28517 -37.72486 -35.12892 -34.06312 -33.88619 -31.41210 -30.80589 -30.35598 -29.71705 -27.87802 -25.81846 -24.06275 -23.75327 -23.23401 -22.49040 -21.14654 -20.06790 -19.45920 -19.31125 -17.94362 -17.24322 -16.80804 -16.36583 -16.10391 -15.87150 -15.27993 -15.18316 -14.97781 -14.58164 -14.51200 -14.34875 -14.00585 -13.82077 -13.53693 -13.41540 -13.19461 -12.77824 -12.46023 -12.40658 -12.10460 -11.92859 -11.63465 -11.59091 -11.53124 -11.34801 -11.25721 -11.07340 -11.01555 -10.86778 -10.70372 -10.56599 -10.48242 -10.43844 -10.24794 -10.09577 -9.52723 -9.43663 -8.86900 -8.79742 -8.22500 -7.99933 -6.45755 -3.86364 2.66230 2.89083 3.15959 3.22406 3.26284 3.76155 3.84759 3.97630 4.17088 4.34591 4.45062 4.61620 4.64935 4.70255 4.87022 4.93749 4.98329 5.05642 5.14932 5.21240 5.28208 5.35476 5.38186 5.41976 5.48057 5.58698 5.59440 5.62349 5.63390 5.71843 5.74098 5.84823 5.89420 5.91707 5.97456 6.13306 6.17376 6.20659 6.36425 6.40992 6.50369 6.54613 6.66032 6.71772 7.10875 7.49396 7.50961 8.01512 8.25428 8.57797 9.14697 9.50227 10.02539 10.71888 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009226 B = 0.004183 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.093155 B = 6692.068240 C = 8896.595078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C -0.114 4.114 4 H 0.095 0.905 5 C -0.147 4.147 6 C 0.044 3.956 7 O -0.349 6.349 8 C 0.061 3.939 9 H 0.092 0.908 10 C 0.522 3.478 11 O -0.527 6.527 12 N -0.720 5.720 13 C 0.144 3.856 14 C 0.006 3.994 15 H 0.083 0.917 16 C -0.133 4.133 17 C 0.011 3.989 18 N -0.439 5.439 19 C 0.007 3.993 20 C 0.446 3.554 21 O -0.568 6.568 22 N -0.567 5.567 23 C -0.296 4.296 24 H 0.102 0.898 25 C 0.023 3.977 26 N -0.903 5.903 27 Si 0.927 3.073 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.402 0.598 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.390 0.610 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.187 -0.076 -6.730 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C -0.133 4.133 4 H 0.113 0.887 5 C -0.185 4.185 6 C -0.033 4.033 7 O -0.267 6.267 8 C -0.001 4.001 9 H 0.110 0.890 10 C 0.308 3.692 11 O -0.403 6.403 12 N -0.375 5.375 13 C 0.020 3.980 14 C -0.104 4.104 15 H 0.101 0.899 16 C -0.171 4.171 17 C -0.117 4.117 18 N -0.162 5.162 19 C -0.125 4.125 20 C 0.231 3.769 21 O -0.451 6.451 22 N -0.204 5.204 23 C -0.426 4.426 24 H 0.119 0.881 25 C -0.178 4.178 26 N -0.544 5.544 27 Si 0.754 3.246 28 H -0.200 1.200 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.239 0.761 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.092 0.908 45 H 0.111 0.889 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.096 0.904 49 H 0.223 0.777 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.989 -0.632 -8.413 13.854 hybrid contribution -0.744 0.850 1.815 2.138 sum 10.245 0.218 -6.597 12.187 Atomic orbital electron populations 1.21645 0.94531 1.02540 1.01180 1.22032 0.97458 0.93701 1.03759 1.22630 0.92365 0.99282 0.99055 0.88670 1.23221 0.98356 0.99816 0.97075 1.23632 0.86517 0.93232 0.99904 1.88967 1.37794 1.61113 1.38822 1.22744 0.94393 0.92480 0.90469 0.89049 1.20267 0.80066 0.87189 0.81681 1.90693 1.37061 1.71691 1.40835 1.46079 1.53004 1.15866 1.22596 1.21252 0.97923 0.82212 0.96587 1.23826 0.91879 0.97121 0.97604 0.89891 1.23330 0.97632 0.93970 1.02195 1.23879 0.97614 0.92618 0.97619 1.68477 1.09253 1.01634 1.36839 1.22552 0.97425 0.97073 0.95441 1.19591 0.87840 0.84541 0.84946 1.90540 1.67178 1.47188 1.40201 1.41866 1.07782 1.36138 1.34617 1.19604 0.81896 1.21121 1.19966 0.88065 1.25216 1.00386 0.96238 0.95964 1.69592 1.36566 1.25255 1.23021 0.85971 0.82448 0.78070 0.78068 1.19957 1.21007 1.19922 0.92144 0.93851 0.92049 0.92258 0.89001 0.90130 0.89762 0.88728 0.91891 0.76073 0.90688 0.91212 0.88805 0.90825 0.88873 0.91369 0.92293 0.90415 0.77697 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.79 37.16 0.36 -1.84 16 2 C -0.13 -1.91 4.15 -26.73 -0.11 -2.02 16 3 C -0.11 -1.41 3.04 -89.09 -0.27 -1.68 16 4 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 5 C -0.15 -1.59 6.03 -24.72 -0.15 -1.74 16 6 C 0.04 0.46 7.72 38.21 0.29 0.76 16 7 O -0.35 -5.01 10.74 -54.80 -0.59 -5.60 16 8 C 0.06 0.79 3.84 -27.31 -0.10 0.68 16 9 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 10 C 0.52 7.73 5.68 -10.98 -0.06 7.67 16 11 O -0.53 -9.73 16.53 -14.02 -0.23 -9.96 16 12 N -0.72 -9.16 3.69 -60.29 -0.22 -9.39 16 13 C 0.14 1.71 5.83 -4.04 -0.02 1.68 16 14 C 0.01 0.06 3.41 -66.66 -0.23 -0.16 16 15 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 16 C -0.13 -1.32 7.84 -25.79 -0.20 -1.52 16 17 C 0.01 0.15 7.96 -2.64 -0.02 0.12 16 18 N -0.44 -6.31 5.29 -231.13 -1.22 -7.54 16 19 C 0.01 0.11 5.09 -4.97 -0.03 0.09 16 20 C 0.45 9.63 7.83 -10.98 -0.09 9.55 16 21 O -0.57 -14.34 16.01 5.55 0.09 -14.25 16 22 N -0.57 -13.33 5.29 -10.96 -0.06 -13.39 16 23 C -0.30 -7.83 9.68 -14.93 -0.14 -7.97 16 24 H 0.10 2.83 7.16 -52.49 -0.38 2.46 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -23.55 13.05 55.50 0.72 -22.82 16 27 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 30 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.58 7.63 -51.93 -0.40 0.19 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.92 7.70 -51.93 -0.40 0.52 16 35 H 0.09 1.42 4.82 -51.93 -0.25 1.17 16 36 H 0.08 0.92 7.77 -51.93 -0.40 0.52 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.40 4.89 5.52 -40.82 -0.23 4.67 16 41 H 0.07 0.99 7.87 -51.93 -0.41 0.59 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.93 7.92 -51.93 -0.41 0.52 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.07 0.81 7.48 -51.93 -0.39 0.43 16 47 H 0.06 0.84 7.38 -51.93 -0.38 0.45 16 48 H 0.08 1.06 6.42 -51.93 -0.33 0.72 16 49 H 0.39 8.82 7.90 -40.82 -0.32 8.50 16 50 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -32.53 398.05 -9.47 -42.00 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -8.07 Total: 15.44 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.87 Total: 4.13 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.78 Total: -53.13 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.73 Total: -29.81 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.53 -9.47 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323247106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.056 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds