Wall clock time and date at job start Tue Mar 31 2020 23:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47474 * 2 1 4 4 H 1.08997 * 110.43632 * 52.45016 * 3 2 1 5 5 C 1.54818 * 110.48560 * 289.76555 * 3 2 1 6 6 C 1.54992 * 102.09438 * 220.44272 * 5 3 2 7 7 O 1.44382 * 103.48918 * 37.02117 * 6 5 3 8 8 C 1.43740 * 106.97798 * 319.94106 * 7 6 5 9 9 H 1.09003 * 110.00720 * 267.01754 * 8 7 6 10 10 C 1.50702 * 109.87904 * 145.93444 * 8 7 6 11 11 O 1.21283 * 120.00262 * 357.17280 * 10 8 7 12 12 N 1.34777 * 119.99928 * 176.89185 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.08992 * 112.95864 * 285.33966 * 14 13 12 16 16 C 1.53935 * 113.75999 * 153.68781 * 14 13 12 17 17 C 1.53943 * 86.33892 * 221.96523 * 16 14 13 18 18 N 1.47962 * 113.75418 * 56.98235 * 14 13 12 19 19 C 1.46906 * 111.00042 * 251.89722 * 18 14 13 20 20 C 1.50697 * 109.46940 * 170.00065 * 19 18 14 21 21 O 1.21287 * 120.00215 * 0.02562 * 20 19 18 22 22 N 1.34781 * 119.99572 * 180.02562 * 20 19 18 23 23 C 1.37099 * 119.99726 * 180.02562 * 22 20 19 24 24 H 1.07997 * 120.00246 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99684 * 179.97438 * 23 22 20 26 26 N 1.31412 * 120.00449 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99772 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47015 * 60.00411 * 27 25 23 29 29 H 1.48499 * 109.47044 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47295 * 300.00527 * 27 25 23 31 31 H 1.09000 * 109.47107 * 300.00283 * 1 2 3 32 32 H 1.09006 * 109.47073 * 60.00167 * 1 2 3 33 33 H 1.09004 * 109.47431 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47107 * 239.99717 * 2 1 3 35 35 H 1.09006 * 109.47073 * 119.99833 * 2 1 3 36 36 H 1.09003 * 110.90777 * 338.63924 * 5 3 2 37 37 H 1.08994 * 110.90581 * 102.24335 * 5 3 2 38 38 H 1.08999 * 110.62252 * 155.52408 * 6 5 3 39 39 H 1.09001 * 110.61500 * 278.36790 * 6 5 3 40 40 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 41 41 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 42 42 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 43 43 H 1.08995 * 113.73636 * 336.31903 * 16 14 13 44 44 H 1.09000 * 113.73229 * 107.61099 * 16 14 13 45 45 H 1.09003 * 113.75642 * 138.04256 * 17 16 14 46 46 H 1.08999 * 113.75832 * 269.28889 * 17 16 14 47 47 H 1.08997 * 109.47322 * 290.00844 * 19 18 14 48 48 H 1.09001 * 109.46353 * 50.00345 * 19 18 14 49 49 H 0.96997 * 120.00477 * 359.97438 * 22 20 19 50 50 H 0.96993 * 120.00119 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5801 2.0088 0.8098 5 6 1.7583 2.1168 -1.3648 6 6 3.0604 2.9229 -1.6037 7 8 4.0921 2.0591 -1.0802 8 6 3.5756 1.4716 0.1258 9 1 3.8655 2.0729 0.9874 10 6 4.1039 0.0686 0.2792 11 8 4.8095 -0.4114 -0.5826 12 7 3.7969 -0.6508 1.3768 13 6 4.3153 -2.0125 1.5289 14 6 3.8211 -2.6017 2.8516 15 1 4.3377 -2.1914 3.7191 16 6 3.7333 -4.1386 2.8515 17 6 2.3957 -3.9637 3.5932 18 7 2.3476 -2.6131 2.9854 19 6 1.8999 -1.6104 3.9613 20 6 0.4002 -1.4782 3.8935 21 8 -0.2333 -2.1531 3.1097 22 7 -0.2369 -0.6099 4.7038 23 6 -1.6013 -0.4899 4.6425 24 1 -2.1655 -1.0914 3.9452 25 6 -2.2582 0.4049 5.4783 26 7 -1.5718 1.1365 6.3271 27 14 -4.1172 0.5689 5.3943 28 1 -4.7442 -0.7405 5.7068 29 1 -4.5697 1.5829 6.3803 30 1 -4.5153 0.9949 4.0285 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 1.6146 1.3697 -2.1455 37 1 0.8962 2.7805 -1.3001 38 1 3.2121 3.1004 -2.6684 39 1 3.0331 3.8663 -1.0585 40 1 3.2325 -0.2670 2.0661 41 1 3.9631 -2.6298 0.7024 42 1 5.4051 -1.9888 1.5259 43 1 3.6299 -4.5721 1.8569 44 1 4.5062 -4.6222 3.4489 45 1 1.6090 -4.6322 3.2435 46 1 2.4936 -3.9536 4.6788 47 1 2.1922 -1.9231 4.9637 48 1 2.3602 -0.6494 3.7318 49 1 0.2696 -0.0704 5.3308 50 1 -2.0304 1.7613 6.9102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323247106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:55 Heat of formation + Delta-G solvation = -99.730779 kcal Electronic energy + Delta-G solvation = -31705.151263 eV Core-core repulsion = 27539.749921 eV Total energy + Delta-G solvation = -4165.401342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.89521 -41.09636 -39.59916 -39.20516 -36.27101 -35.86135 -35.10614 -33.24233 -32.04486 -31.36351 -30.85243 -28.87684 -27.44646 -25.26200 -25.10369 -24.30612 -23.40120 -22.23321 -21.12490 -20.99187 -20.42424 -19.84080 -18.30257 -17.82944 -17.61835 -17.36109 -17.12235 -16.49979 -16.40751 -16.28327 -15.97822 -15.69281 -15.55614 -15.41698 -15.16234 -14.79039 -14.52787 -14.32300 -14.14970 -13.92002 -13.56405 -13.48098 -13.14118 -13.03604 -12.91343 -12.63897 -12.58065 -12.39300 -12.30364 -12.21615 -12.13830 -12.12976 -11.84178 -11.76612 -11.65901 -11.57759 -11.43060 -11.10928 -10.51531 -10.28151 -9.96027 -9.93361 -9.59300 -8.41471 -5.88180 1.40405 1.43088 1.52230 1.52567 1.88448 2.13933 2.30582 2.74278 3.01488 3.25240 3.34192 3.39615 3.57912 3.63194 3.67910 3.78481 3.95862 4.08124 4.16254 4.19578 4.25254 4.31054 4.33360 4.38074 4.42793 4.44249 4.49861 4.55533 4.67813 4.69710 4.77334 4.84236 4.86136 4.90586 4.95498 5.00810 5.08230 5.15538 5.24749 5.26404 5.32873 5.36794 5.46039 5.50592 5.75411 5.96888 6.15004 6.43018 6.67927 7.14898 7.20602 7.64995 8.22132 8.75524 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009226 B = 0.004183 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.093155 B = 6692.068240 C = 8896.595078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C -0.111 4.111 4 H 0.106 0.894 5 C -0.145 4.145 6 C 0.042 3.958 7 O -0.378 6.378 8 C 0.061 3.939 9 H 0.117 0.883 10 C 0.519 3.481 11 O -0.570 6.570 12 N -0.710 5.710 13 C 0.143 3.857 14 C 0.018 3.982 15 H 0.111 0.889 16 C -0.115 4.115 17 C 0.003 3.997 18 N -0.470 5.470 19 C 0.020 3.980 20 C 0.447 3.553 21 O -0.609 6.609 22 N -0.576 5.576 23 C -0.323 4.323 24 H 0.075 0.925 25 C -0.009 4.009 26 N -0.920 5.920 27 Si 0.982 3.018 28 H -0.276 1.276 29 H -0.273 1.273 30 H -0.273 1.273 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.406 0.594 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.101 0.899 49 H 0.395 0.605 50 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.291 1.035 -5.970 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C -0.129 4.129 4 H 0.124 0.876 5 C -0.183 4.183 6 C -0.034 4.034 7 O -0.296 6.296 8 C 0.000 4.000 9 H 0.135 0.865 10 C 0.305 3.695 11 O -0.449 6.449 12 N -0.364 5.364 13 C 0.019 3.981 14 C -0.091 4.091 15 H 0.128 0.872 16 C -0.153 4.153 17 C -0.125 4.125 18 N -0.194 5.194 19 C -0.112 4.112 20 C 0.234 3.766 21 O -0.494 6.494 22 N -0.214 5.214 23 C -0.453 4.453 24 H 0.093 0.907 25 C -0.209 4.209 26 N -0.561 5.561 27 Si 0.807 3.193 28 H -0.201 1.201 29 H -0.197 1.197 30 H -0.199 1.199 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.244 0.756 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.124 0.876 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.119 0.881 49 H 0.228 0.772 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.100 0.481 -7.621 14.308 hybrid contribution -1.089 0.430 1.529 1.925 sum 11.012 0.911 -6.092 12.618 Atomic orbital electron populations 1.21540 0.95459 1.00771 1.01247 1.21903 0.96385 0.95343 1.02454 1.22599 0.92126 0.97694 1.00530 0.87568 1.23231 0.99518 0.99881 0.95649 1.23852 0.85160 0.93350 1.01030 1.88942 1.39377 1.61919 1.39397 1.22852 0.94326 0.91668 0.91170 0.86525 1.20685 0.79431 0.87964 0.81381 1.90666 1.39203 1.72741 1.42312 1.46049 1.52309 1.16013 1.22071 1.21328 0.98646 0.81481 0.96622 1.23878 0.89550 0.97883 0.97788 0.87161 1.23243 0.96608 0.93410 1.02057 1.23936 0.98564 0.91472 0.98577 1.68433 1.11974 1.01950 1.37024 1.22434 0.92549 0.98991 0.97222 1.20663 0.90417 0.82541 0.82998 1.90518 1.69024 1.48341 1.41511 1.41908 1.07014 1.37041 1.35446 1.19497 0.83476 1.21847 1.20434 0.90705 1.25848 1.03980 0.95634 0.95402 1.69645 1.37815 1.25428 1.23228 0.85149 0.77988 0.78038 0.78162 1.20114 1.19727 1.19872 0.93935 0.91733 0.94732 0.93758 0.90088 0.91167 0.87802 0.87436 0.89673 0.75597 0.92593 0.89855 0.89243 0.87627 0.91387 0.90079 0.90037 0.88063 0.77180 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.79 71.98 0.70 -3.53 16 2 C -0.12 -3.59 4.15 30.59 0.13 -3.46 16 3 C -0.11 -2.59 3.04 -9.80 -0.03 -2.62 16 4 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 5 C -0.15 -2.90 6.03 31.90 0.19 -2.71 16 6 C 0.04 0.79 7.72 72.66 0.56 1.35 16 7 O -0.38 -10.36 10.74 -130.26 -1.40 -11.75 16 8 C 0.06 1.50 3.84 30.22 0.12 1.62 16 9 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 10 C 0.52 15.05 5.68 87.66 0.50 15.55 16 11 O -0.57 -21.16 16.53 15.68 0.26 -20.90 16 12 N -0.71 -17.28 3.69 -463.06 -1.71 -18.99 16 13 C 0.14 3.19 5.83 86.38 0.50 3.69 16 14 C 0.02 0.35 3.41 45.02 0.15 0.51 16 15 H 0.11 1.62 7.92 -2.39 -0.02 1.60 16 16 C -0.12 -2.00 7.84 31.24 0.25 -1.76 16 17 C 0.00 0.08 7.96 86.36 0.69 0.76 16 18 N -0.47 -12.99 5.29 -885.15 -4.68 -17.67 16 19 C 0.02 0.59 5.09 85.56 0.44 1.02 16 20 C 0.45 19.44 7.83 87.66 0.69 20.13 16 21 O -0.61 -31.73 16.01 -3.05 -0.05 -31.78 16 22 N -0.58 -27.35 5.29 -306.99 -1.62 -28.97 16 23 C -0.32 -17.40 9.68 84.04 0.81 -16.59 16 24 H 0.07 4.36 7.16 -2.91 -0.02 4.34 16 25 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 26 N -0.92 -47.48 13.05 21.66 0.28 -47.19 16 27 Si 0.98 41.72 29.55 68.60 2.03 43.74 16 28 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 29 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 30 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.73 7.63 -2.38 -0.02 1.72 16 33 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.04 1.41 7.70 -2.39 -0.02 1.39 16 35 H 0.08 2.52 4.82 -2.38 -0.01 2.51 16 36 H 0.07 1.55 7.77 -2.39 -0.02 1.53 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.41 9.22 5.52 -92.71 -0.51 8.71 16 41 H 0.06 1.48 7.87 -2.39 -0.02 1.46 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.09 1.66 7.92 -2.39 -0.02 1.64 16 44 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.08 1.76 7.48 -2.39 -0.02 1.74 16 47 H 0.08 2.08 7.38 -2.39 -0.02 2.06 16 48 H 0.10 2.51 6.42 -2.39 -0.02 2.49 16 49 H 0.39 17.76 7.90 -92.71 -0.73 17.03 16 50 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 Total: -1.00 -73.07 398.05 -1.01 -74.07 By element: Atomic # 1 Polarization: 45.75 SS G_CDS: -0.28 Total: 45.46 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.16 Total: 13.98 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -7.73 Total: -112.83 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -1.19 Total: -64.43 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -73.07 -1.01 -74.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323247106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.656 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds