Wall clock time and date at job start Tue Mar 31 2020 22:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00211 * 2 1 4 4 C 1.50705 * 119.99958 * 180.02562 * 2 1 3 5 5 O 1.42898 * 109.47045 * 359.97438 * 4 2 1 6 6 C 1.42899 * 114.00163 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47362 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47074 * 64.99884 * 7 6 5 9 9 C 1.34781 * 120.00242 * 180.02562 * 8 7 6 10 10 O 1.21356 * 119.99422 * 359.97438 * 9 8 7 11 11 C 1.49451 * 120.00373 * 180.02562 * 9 8 7 12 12 O 1.21348 * 119.99652 * 359.97438 * 11 9 8 13 13 N 1.34775 * 119.99841 * 179.97438 * 11 9 8 14 14 C 1.46503 * 119.99376 * 179.97438 * 13 11 9 15 15 C 1.53065 * 109.44591 * 84.79556 * 14 13 11 16 16 C 1.53192 * 109.29648 * 181.23295 * 15 14 13 17 17 N 1.46922 * 108.89269 * 305.57538 * 16 15 14 18 18 C 1.36942 * 120.62796 * 233.51528 * 17 16 15 19 19 H 1.08007 * 119.99636 * 151.83092 * 18 17 16 20 20 C 1.38806 * 120.00203 * 331.83144 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08250 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.07925 * 20 18 17 23 23 H 1.48503 * 109.47195 * 89.99708 * 22 20 18 24 24 H 1.48498 * 109.47355 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46850 * 330.00278 * 22 20 18 26 26 C 1.46924 * 118.73925 * 53.53382 * 17 16 15 27 27 C 1.53049 * 109.45272 * 204.99544 * 14 13 11 28 28 H 1.08007 * 119.99801 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00121 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47119 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47202 * 300.00040 * 3 2 1 32 32 H 1.09009 * 109.46780 * 60.00307 * 3 2 1 33 33 H 1.09002 * 109.46856 * 240.00270 * 4 2 1 34 34 H 1.08997 * 109.47477 * 119.99863 * 4 2 1 35 35 H 1.08999 * 109.47366 * 60.00287 * 6 5 4 36 36 H 1.08999 * 109.46937 * 300.00130 * 6 5 4 37 37 H 1.09003 * 109.46756 * 305.00031 * 7 6 5 38 38 H 1.09000 * 109.47454 * 185.00014 * 7 6 5 39 39 H 0.97005 * 120.00355 * 0.02562 * 8 7 6 40 40 H 0.96995 * 120.00047 * 359.97438 * 13 11 9 41 41 H 1.08996 * 109.45813 * 324.96250 * 14 13 11 42 42 H 1.09005 * 109.39523 * 61.35360 * 15 14 13 43 43 H 1.09004 * 109.62174 * 301.25047 * 15 14 13 44 44 H 1.09003 * 109.58615 * 185.71531 * 16 15 14 45 45 H 1.08998 * 109.58372 * 65.43477 * 16 15 14 46 46 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.58325 * 66.18371 * 26 17 16 48 48 H 1.08996 * 109.58499 * 186.46256 * 26 17 16 49 49 H 1.09002 * 109.49883 * 58.67895 * 27 14 13 50 50 H 1.08997 * 109.52642 * 298.59203 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 8 1.1348 -2.3913 -0.0005 6 6 1.7493 -3.6814 -0.0004 7 6 0.6663 -4.7622 -0.0009 8 7 -0.0912 -4.6938 -1.2530 9 6 -1.1029 -5.5558 -1.4765 10 8 -1.3860 -6.3889 -0.6407 11 6 -1.8754 -5.4864 -2.7540 12 8 -1.5920 -4.6536 -3.5899 13 7 -2.8867 -6.3487 -2.9776 14 6 -3.6443 -6.2802 -4.2297 15 6 -2.9130 -7.0782 -5.3120 16 6 -3.6918 -6.9789 -6.6274 17 7 -5.0781 -7.4051 -6.3928 18 6 -5.6476 -8.3825 -7.1646 19 1 -6.4310 -9.0044 -6.7570 20 6 -5.2181 -8.5740 -8.4705 21 7 -4.5234 -7.6362 -9.0791 22 14 -5.6260 -10.1627 -9.3644 23 1 -6.9210 -10.0123 -10.0754 24 1 -4.5545 -10.4673 -10.3465 25 1 -5.7267 -11.2717 -8.3819 26 6 -5.8420 -6.7624 -5.3148 27 6 -5.0412 -6.8668 -4.0130 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 3.1352 1.1058 0.0005 31 1 1.8002 1.8766 -0.8900 32 1 1.8002 1.8766 0.8901 33 1 2.6901 -1.3633 0.8894 34 1 2.6901 -1.3626 -0.8906 35 1 2.3695 -3.7885 0.8896 36 1 2.3694 -3.7885 -0.8904 37 1 -0.0075 -4.6017 0.8407 38 1 1.1322 -5.7435 0.0887 39 1 0.1353 -4.0281 -1.9212 40 1 -3.1130 -7.0146 -2.3096 41 1 -3.7319 -5.2405 -4.5447 42 1 -2.8445 -8.1226 -5.0077 43 1 -1.9106 -6.6730 -5.4512 44 1 -3.2319 -7.6262 -7.3742 45 1 -3.6813 -5.9480 -6.9813 46 1 -4.2235 -7.7699 -9.9918 47 1 -6.0068 -5.7129 -5.5593 48 1 -6.8018 -7.2652 -5.1972 49 1 -5.5513 -6.3108 -3.2265 50 1 -4.9556 -7.9137 -3.7216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323865386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:36 Heat of formation + Delta-G solvation = -80.971741 kcal Electronic energy + Delta-G solvation = -29158.957093 eV Core-core repulsion = 24994.369204 eV Total energy + Delta-G solvation = -4164.587889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.63406 -39.10612 -38.53600 -37.28467 -35.94156 -34.87725 -34.23596 -32.12279 -30.25672 -30.06614 -29.51982 -27.57643 -26.71211 -25.70325 -24.32814 -22.69088 -22.26109 -21.58697 -20.28218 -19.56154 -18.99483 -18.30119 -17.27162 -17.05356 -16.76213 -16.36240 -15.87265 -15.80529 -15.46669 -15.13941 -14.70649 -14.43695 -14.01854 -13.92283 -13.68537 -13.66760 -13.52137 -13.26031 -13.01730 -13.00206 -12.67459 -12.52047 -12.42658 -12.14695 -11.67418 -11.60312 -11.50299 -11.39556 -11.12075 -10.94452 -10.71171 -10.41712 -10.33127 -10.27170 -10.08601 -9.78456 -9.75940 -9.46773 -9.40876 -9.30582 -8.82204 -8.44013 -6.68697 -5.78794 -3.21721 1.47462 1.89515 2.37086 3.03411 3.29127 3.38019 3.45204 3.47481 3.69047 4.30421 4.49767 4.51117 4.55145 4.64156 4.76450 4.81594 4.89261 4.93341 5.08987 5.17277 5.25809 5.26550 5.38481 5.39441 5.43983 5.53037 5.58806 5.73798 5.79320 5.98315 6.04766 6.20787 6.25700 6.27308 6.36083 6.39400 6.55269 6.64068 6.72393 6.76771 6.77919 6.92242 6.97830 7.35083 7.46286 7.66914 7.76769 7.79833 8.12159 8.44998 9.20802 9.84012 10.40547 11.29931 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.001860 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.681369 B =15051.441978 C =15508.266258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.150 4.150 3 C -0.113 4.113 4 C 0.099 3.901 5 O -0.382 6.382 6 C 0.049 3.951 7 C 0.121 3.879 8 N -0.699 5.699 9 C 0.508 3.492 10 O -0.525 6.525 11 C 0.503 3.497 12 O -0.521 6.521 13 N -0.691 5.691 14 C 0.148 3.852 15 C -0.148 4.148 16 C 0.174 3.826 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.149 3.851 27 C -0.140 4.140 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.416 0.584 40 H 0.407 0.593 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.022 0.978 46 H 0.254 0.746 47 H 0.021 0.979 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.701 12.180 20.951 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.170 4.170 4 C 0.023 3.977 5 O -0.302 6.302 6 C -0.028 4.028 7 C -0.002 4.002 8 N -0.353 5.353 9 C 0.289 3.711 10 O -0.401 6.401 11 C 0.282 3.718 12 O -0.397 6.397 13 N -0.342 5.342 14 C 0.046 3.954 15 C -0.188 4.188 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.022 3.978 27 C -0.180 4.180 28 H 0.114 0.886 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.253 0.747 40 H 0.243 0.757 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.040 0.960 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.557 12.199 20.766 28.141 hybrid contribution 0.214 -0.805 -0.457 0.951 sum 14.771 11.393 20.309 27.576 Atomic orbital electron populations 1.23743 0.95487 1.02444 0.98628 1.21550 0.95915 0.94118 1.03457 1.20735 0.99787 0.94081 1.02404 1.21276 0.91030 0.84897 1.00480 1.87909 1.33293 1.13459 1.95527 1.22777 0.95207 0.83002 1.01776 1.21486 0.93698 0.97977 0.87058 1.45681 1.33075 1.35734 1.20820 1.20390 0.81226 0.81664 0.87796 1.90750 1.67029 1.35995 1.46297 1.19969 0.82093 0.82682 0.87027 1.90776 1.66704 1.36227 1.46004 1.46186 1.32244 1.34308 1.21479 1.21237 0.90851 1.01315 0.82037 1.22599 0.98994 0.99177 0.98010 1.20756 0.83815 0.98745 0.91947 1.44097 1.08600 1.42892 1.35902 1.19163 1.19127 1.07871 0.92225 0.91633 1.25063 1.00713 0.97884 0.95951 1.70030 1.41162 1.31400 1.11982 0.86306 0.77545 0.83584 0.79380 1.21377 1.21574 1.20485 1.20843 0.93947 0.96131 0.86924 1.22359 0.94501 1.00801 1.00312 0.88559 0.87102 0.92064 0.91250 0.91395 0.92266 0.92106 0.91158 0.92085 0.90017 0.89297 0.74694 0.75745 0.89594 0.92408 0.92723 0.89155 0.96023 0.93573 0.96104 0.92160 0.92361 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 13.71 29.02 0.40 -1.00 16 2 C -0.15 -1.11 6.05 -101.06 -0.61 -1.72 16 3 C -0.11 -0.60 10.05 36.00 0.36 -0.24 16 4 C 0.10 0.65 6.27 36.01 0.23 0.88 16 5 O -0.38 -3.10 8.68 -35.23 -0.31 -3.41 16 6 C 0.05 0.29 6.07 37.16 0.23 0.52 16 7 C 0.12 0.95 6.06 -4.04 -0.02 0.93 16 8 N -0.70 -7.40 5.50 -60.73 -0.33 -7.73 16 9 C 0.51 6.84 7.89 -11.58 -0.09 6.75 16 10 O -0.52 -7.87 16.48 5.49 0.09 -7.78 16 11 C 0.50 7.74 7.85 -11.59 -0.09 7.65 16 12 O -0.52 -9.23 16.14 5.50 0.09 -9.14 16 13 N -0.69 -10.45 5.07 -54.18 -0.27 -10.72 16 14 C 0.15 2.59 2.41 -67.87 -0.16 2.43 16 15 C -0.15 -2.93 5.66 -26.60 -0.15 -3.08 16 16 C 0.17 4.19 5.30 -3.71 -0.02 4.17 16 17 N -0.59 -14.70 3.00 -172.32 -0.52 -15.22 16 18 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 19 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -26.22 11.20 55.49 0.62 -25.60 16 22 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 27 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 28 H 0.10 0.70 8.05 -52.48 -0.42 0.28 16 29 H 0.11 1.09 6.84 -52.49 -0.36 0.73 16 30 H 0.06 0.25 8.00 -51.93 -0.42 -0.16 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.42 4.30 7.94 -40.82 -0.32 3.98 16 40 H 0.41 5.53 8.07 -40.82 -0.33 5.20 16 41 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 411.52 15.07 6.20 6.20 Total: -1.00 -32.28 411.52 -8.24 -40.52 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.44 Total: 5.54 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -0.34 Total: 10.75 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.50 Total: -59.27 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.13 Total: -20.33 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.28 -8.24 -40.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323865386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.454 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds