Wall clock time and date at job start Tue Mar 31 2020 22:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00211 * 2 1 4 4 C 1.50705 * 119.99958 * 180.02562 * 2 1 3 5 5 O 1.42898 * 109.47045 * 359.97438 * 4 2 1 6 6 C 1.42899 * 114.00163 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47362 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47074 * 64.99884 * 7 6 5 9 9 C 1.34781 * 120.00242 * 180.02562 * 8 7 6 10 10 O 1.21356 * 119.99422 * 359.97438 * 9 8 7 11 11 C 1.49451 * 120.00373 * 180.02562 * 9 8 7 12 12 O 1.21348 * 119.99652 * 359.97438 * 11 9 8 13 13 N 1.34775 * 119.99841 * 179.97438 * 11 9 8 14 14 C 1.46503 * 119.99376 * 179.97438 * 13 11 9 15 15 C 1.53065 * 109.44591 * 84.79556 * 14 13 11 16 16 C 1.53192 * 109.29648 * 181.23295 * 15 14 13 17 17 N 1.46922 * 108.89269 * 305.57538 * 16 15 14 18 18 C 1.36942 * 120.62796 * 233.51528 * 17 16 15 19 19 H 1.08007 * 119.99636 * 151.83092 * 18 17 16 20 20 C 1.38806 * 120.00203 * 331.83144 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08250 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.07925 * 20 18 17 23 23 H 1.48503 * 109.47195 * 89.99708 * 22 20 18 24 24 H 1.48498 * 109.47355 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46850 * 330.00278 * 22 20 18 26 26 C 1.46924 * 118.73925 * 53.53382 * 17 16 15 27 27 C 1.53049 * 109.45272 * 204.99544 * 14 13 11 28 28 H 1.08007 * 119.99801 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00121 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47119 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47202 * 300.00040 * 3 2 1 32 32 H 1.09009 * 109.46780 * 60.00307 * 3 2 1 33 33 H 1.09002 * 109.46856 * 240.00270 * 4 2 1 34 34 H 1.08997 * 109.47477 * 119.99863 * 4 2 1 35 35 H 1.08999 * 109.47366 * 60.00287 * 6 5 4 36 36 H 1.08999 * 109.46937 * 300.00130 * 6 5 4 37 37 H 1.09003 * 109.46756 * 305.00031 * 7 6 5 38 38 H 1.09000 * 109.47454 * 185.00014 * 7 6 5 39 39 H 0.97005 * 120.00355 * 0.02562 * 8 7 6 40 40 H 0.96995 * 120.00047 * 359.97438 * 13 11 9 41 41 H 1.08996 * 109.45813 * 324.96250 * 14 13 11 42 42 H 1.09005 * 109.39523 * 61.35360 * 15 14 13 43 43 H 1.09004 * 109.62174 * 301.25047 * 15 14 13 44 44 H 1.09003 * 109.58615 * 185.71531 * 16 15 14 45 45 H 1.08998 * 109.58372 * 65.43477 * 16 15 14 46 46 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.58325 * 66.18371 * 26 17 16 48 48 H 1.08996 * 109.58499 * 186.46256 * 26 17 16 49 49 H 1.09002 * 109.49883 * 58.67895 * 27 14 13 50 50 H 1.08997 * 109.52642 * 298.59203 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 8 1.1348 -2.3913 -0.0005 6 6 1.7493 -3.6814 -0.0004 7 6 0.6663 -4.7622 -0.0009 8 7 -0.0912 -4.6938 -1.2530 9 6 -1.1029 -5.5558 -1.4765 10 8 -1.3860 -6.3889 -0.6407 11 6 -1.8754 -5.4864 -2.7540 12 8 -1.5920 -4.6536 -3.5899 13 7 -2.8867 -6.3487 -2.9776 14 6 -3.6443 -6.2802 -4.2297 15 6 -2.9130 -7.0782 -5.3120 16 6 -3.6918 -6.9789 -6.6274 17 7 -5.0781 -7.4051 -6.3928 18 6 -5.6476 -8.3825 -7.1646 19 1 -6.4310 -9.0044 -6.7570 20 6 -5.2181 -8.5740 -8.4705 21 7 -4.5234 -7.6362 -9.0791 22 14 -5.6260 -10.1627 -9.3644 23 1 -6.9210 -10.0123 -10.0754 24 1 -4.5545 -10.4673 -10.3465 25 1 -5.7267 -11.2717 -8.3819 26 6 -5.8420 -6.7624 -5.3148 27 6 -5.0412 -6.8668 -4.0130 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 3.1352 1.1058 0.0005 31 1 1.8002 1.8766 -0.8900 32 1 1.8002 1.8766 0.8901 33 1 2.6901 -1.3633 0.8894 34 1 2.6901 -1.3626 -0.8906 35 1 2.3695 -3.7885 0.8896 36 1 2.3694 -3.7885 -0.8904 37 1 -0.0075 -4.6017 0.8407 38 1 1.1322 -5.7435 0.0887 39 1 0.1353 -4.0281 -1.9212 40 1 -3.1130 -7.0146 -2.3096 41 1 -3.7319 -5.2405 -4.5447 42 1 -2.8445 -8.1226 -5.0077 43 1 -1.9106 -6.6730 -5.4512 44 1 -3.2319 -7.6262 -7.3742 45 1 -3.6813 -5.9480 -6.9813 46 1 -4.2235 -7.7699 -9.9918 47 1 -6.0068 -5.7129 -5.5593 48 1 -6.8018 -7.2652 -5.1972 49 1 -5.5513 -6.3108 -3.2265 50 1 -4.9556 -7.9137 -3.7216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323865386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:35 Heat of formation + Delta-G solvation = -103.843598 kcal Electronic energy + Delta-G solvation = -29159.948891 eV Core-core repulsion = 24994.369204 eV Total energy + Delta-G solvation = -4165.579687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.79468 -40.13052 -39.33248 -38.82481 -36.73038 -36.09176 -35.27198 -33.90810 -31.83425 -31.31159 -30.84429 -28.07031 -27.48662 -27.07494 -25.68816 -23.95171 -23.73862 -22.87297 -21.49519 -21.08221 -19.69764 -19.42547 -18.66344 -18.13186 -17.73026 -17.23230 -16.96613 -16.83360 -16.54244 -16.40767 -15.99227 -15.63288 -15.36701 -15.32682 -15.01450 -14.74147 -14.58646 -14.27720 -14.18994 -14.10431 -13.74639 -13.67105 -13.22259 -13.13055 -13.03288 -12.86652 -12.63795 -12.63216 -12.55156 -12.14589 -12.13001 -12.08183 -11.92661 -11.85273 -11.58222 -11.40707 -10.85945 -10.66186 -10.58607 -10.35227 -10.17133 -9.85243 -8.70737 -7.87451 -5.33274 0.32338 1.29601 1.31665 1.47894 1.49567 1.59183 2.12093 2.51645 2.52168 2.66098 3.28747 3.41064 3.66775 3.78345 3.82011 4.00841 4.01692 4.15359 4.24879 4.28336 4.40983 4.45160 4.45637 4.51531 4.58426 4.64639 4.70236 4.73192 4.78638 4.81572 4.87260 4.99026 5.03485 5.10725 5.11238 5.13394 5.16785 5.29957 5.33852 5.45489 5.64456 5.68624 5.69822 5.82418 5.90361 6.29014 6.33352 6.39209 6.71514 6.93635 7.14002 7.84600 8.36941 9.19740 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.001860 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.681369 B =15051.441978 C =15508.266258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.147 4.147 3 C -0.113 4.113 4 C 0.093 3.907 5 O -0.406 6.406 6 C 0.052 3.948 7 C 0.117 3.883 8 N -0.686 5.686 9 C 0.513 3.487 10 O -0.541 6.541 11 C 0.502 3.498 12 O -0.547 6.547 13 N -0.682 5.682 14 C 0.159 3.841 15 C -0.132 4.132 16 C 0.182 3.818 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.072 0.928 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.143 3.857 27 C -0.125 4.125 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.418 0.582 40 H 0.418 0.582 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.057 0.943 45 H -0.005 1.005 46 H 0.250 0.750 47 H 0.016 0.984 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.661 11.839 23.176 30.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.147 4.147 3 C -0.170 4.170 4 C 0.018 3.982 5 O -0.326 6.326 6 C -0.025 4.025 7 C -0.005 4.005 8 N -0.339 5.339 9 C 0.294 3.706 10 O -0.419 6.419 11 C 0.282 3.718 12 O -0.425 6.425 13 N -0.334 5.334 14 C 0.055 3.945 15 C -0.172 4.172 16 C 0.056 3.944 17 N -0.333 5.333 18 C -0.392 4.392 19 H 0.090 0.910 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.193 1.193 26 C 0.017 3.983 27 C -0.164 4.164 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.255 0.745 40 H 0.256 0.744 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.013 0.987 46 H 0.059 0.941 47 H 0.034 0.966 48 H 0.087 0.913 49 H 0.110 0.890 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.524 11.866 23.052 30.219 hybrid contribution -0.050 -0.615 -1.109 1.269 sum 15.474 11.251 21.942 29.112 Atomic orbital electron populations 1.23692 0.96180 1.01846 1.01148 1.21926 0.95821 0.95573 1.01344 1.20778 1.00421 0.93023 1.02759 1.21441 0.90885 0.84055 1.01840 1.87888 1.34535 1.14455 1.95771 1.22860 0.94493 0.81554 1.03563 1.21729 0.93882 0.99605 0.85273 1.45765 1.32011 1.34473 1.21675 1.19947 0.81748 0.82213 0.86735 1.90748 1.67774 1.36919 1.46431 1.20380 0.81850 0.81985 0.87540 1.90769 1.67384 1.37232 1.47102 1.45941 1.32032 1.34667 1.20727 1.20902 0.91338 0.99913 0.82331 1.22345 0.98423 0.99814 0.96663 1.20478 0.84407 0.96184 0.93355 1.44343 1.09165 1.43104 1.36682 1.19543 1.18804 1.08326 0.92520 0.91012 1.25848 1.01264 1.00772 0.96934 1.70192 1.42821 1.33263 1.12022 0.85271 0.76930 0.80118 0.78083 1.21086 1.22145 1.19339 1.21030 0.94591 0.95481 0.87235 1.22174 0.93435 1.01826 0.98966 0.88082 0.88995 0.90583 0.91154 0.90740 0.90385 0.91028 0.88545 0.90977 0.90637 0.87973 0.74500 0.74422 0.91124 0.92095 0.92885 0.92485 0.98716 0.94135 0.96587 0.91335 0.88998 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 13.71 67.79 0.93 -2.31 16 2 C -0.15 -1.99 6.05 -16.48 -0.10 -2.09 16 3 C -0.11 -1.00 10.05 71.24 0.72 -0.28 16 4 C 0.09 1.04 6.27 71.24 0.45 1.49 16 5 O -0.41 -5.99 8.68 -148.98 -1.29 -7.28 16 6 C 0.05 0.49 6.07 71.98 0.44 0.92 16 7 C 0.12 1.63 6.06 86.38 0.52 2.15 16 8 N -0.69 -13.62 5.50 -464.40 -2.55 -16.18 16 9 C 0.51 13.16 7.89 87.27 0.69 13.85 16 10 O -0.54 -15.34 16.48 -3.27 -0.05 -15.39 16 11 C 0.50 14.97 7.85 87.27 0.69 15.66 16 12 O -0.55 -19.24 16.14 -3.24 -0.05 -19.29 16 13 N -0.68 -19.57 5.07 -443.68 -2.25 -21.82 16 14 C 0.16 5.40 2.41 45.03 0.11 5.51 16 15 C -0.13 -5.26 5.66 30.68 0.17 -5.08 16 16 C 0.18 9.08 5.30 86.36 0.46 9.54 16 17 N -0.61 -30.52 3.00 -699.10 -2.09 -32.61 16 18 C -0.26 -14.30 9.58 84.03 0.81 -13.50 16 19 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 20 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16 21 N -0.94 -56.20 11.20 21.65 0.24 -55.96 16 22 Si 0.97 44.94 29.59 68.60 2.03 46.97 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 C 0.14 5.71 6.52 86.36 0.56 6.27 16 27 C -0.12 -3.91 5.55 30.67 0.17 -3.74 16 28 H 0.10 1.50 8.05 -2.91 -0.02 1.48 16 29 H 0.09 1.88 6.84 -2.91 -0.02 1.86 16 30 H 0.08 0.45 8.00 -2.39 -0.02 0.43 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.42 8.21 7.94 -92.70 -0.74 7.47 16 40 H 0.42 10.40 8.07 -92.71 -0.75 9.65 16 41 H 0.07 2.67 7.58 -2.39 -0.02 2.65 16 42 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 44 H 0.06 3.21 6.06 -2.39 -0.01 3.19 16 45 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 47 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 48 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16 49 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -70.96 411.52 0.45 -70.50 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.54 Total: 25.23 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 7.02 Total: 25.83 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -6.65 Total: -126.57 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.40 Total: -41.97 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.96 0.45 -70.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323865386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.339 kcal (2) G-P(sol) polarization free energy of solvation -70.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds