Wall clock time and date at job start Tue Mar 31 2020 23:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47546 * 2 1 4 4 H 1.09003 * 109.47028 * 55.00141 * 3 2 1 5 5 C 1.53001 * 109.47194 * 174.99862 * 3 2 1 6 6 N 1.46494 * 109.46939 * 295.00144 * 3 2 1 7 7 C 1.34783 * 119.99852 * 155.00485 * 6 3 2 8 8 O 1.21284 * 120.00112 * 359.97438 * 7 6 3 9 9 C 1.50702 * 120.00084 * 179.72327 * 7 6 3 10 10 C 1.52990 * 109.47155 * 180.27082 * 9 7 6 11 11 N 1.46503 * 109.47245 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00208 * 179.97438 * 11 10 9 13 13 O 1.21346 * 119.99694 * 0.02562 * 12 11 10 14 14 C 1.49445 * 120.00099 * 180.02562 * 12 11 10 15 15 O 1.21354 * 120.00074 * 354.48797 * 14 12 11 16 16 N 1.34772 * 120.00232 * 174.49242 * 14 12 11 17 17 C 1.46500 * 120.00213 * 185.59138 * 16 14 12 18 18 C 1.53001 * 109.47297 * 185.19123 * 17 16 14 19 19 C 1.50697 * 115.54977 * 57.83559 * 18 17 16 20 20 H 1.07996 * 120.00517 * 264.65789 * 19 18 17 21 21 C 1.37880 * 120.00032 * 84.65367 * 19 18 17 22 22 N 1.31519 * 119.99481 * 1.97507 * 21 19 18 23 23 Si 1.86800 * 120.00243 * 181.97437 * 21 19 18 24 24 H 1.48497 * 109.46734 * 60.00254 * 23 21 19 25 25 H 1.48501 * 109.47137 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46943 * 300.00000 * 23 21 19 27 27 C 1.53003 * 117.49999 * 272.16730 * 18 17 16 28 28 C 1.52999 * 117.49785 * 203.50668 * 18 17 16 29 29 H 1.08997 * 109.46661 * 300.00313 * 1 2 3 30 30 H 1.09004 * 109.46695 * 59.99423 * 1 2 3 31 31 H 1.08991 * 109.47513 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46661 * 239.99687 * 2 1 3 33 33 H 1.09004 * 109.46695 * 120.00577 * 2 1 3 34 34 H 1.09002 * 109.47052 * 59.99670 * 5 3 2 35 35 H 1.08998 * 109.47153 * 180.02562 * 5 3 2 36 36 H 1.09006 * 109.46797 * 300.00465 * 5 3 2 37 37 H 0.96998 * 120.00447 * 334.99194 * 6 3 2 38 38 H 1.09001 * 109.46524 * 300.27048 * 9 7 6 39 39 H 1.09002 * 109.47275 * 60.26771 * 9 7 6 40 40 H 1.09001 * 109.47376 * 299.99444 * 10 9 7 41 41 H 1.09002 * 109.47283 * 59.99693 * 10 9 7 42 42 H 0.96996 * 119.99517 * 0.02562 * 11 10 9 43 43 H 0.96998 * 119.99848 * 5.58156 * 16 14 12 44 44 H 1.09002 * 109.47278 * 305.19304 * 17 16 14 45 45 H 1.09003 * 109.46950 * 65.19408 * 17 16 14 46 46 H 0.97004 * 119.99816 * 185.01242 * 22 21 19 47 47 H 1.09005 * 117.49925 * 0.02562 * 27 18 17 48 48 H 1.09002 * 117.49737 * 145.01963 * 27 18 17 49 49 H 1.09006 * 117.49914 * 214.97495 * 28 18 17 50 50 H 1.08996 * 117.50264 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6056 1.9815 0.8419 5 6 3.5650 1.4442 0.1258 6 7 1.6526 2.0974 -1.2518 7 6 1.5260 3.4384 -1.2995 8 8 1.7324 4.1028 -0.3061 9 6 1.1333 4.1127 -2.5888 10 6 1.0675 5.6260 -2.3734 11 7 0.6865 6.2816 -3.6269 12 6 0.5647 7.6229 -3.6760 13 8 0.7712 8.2876 -2.6820 14 6 0.1755 8.2917 -4.9545 15 8 0.0665 7.6391 -5.9719 16 7 -0.0545 9.6194 -4.9778 17 6 -0.5541 10.2550 -6.1995 18 6 -0.6056 11.7713 -6.0012 19 6 0.7032 12.4241 -5.6383 20 1 0.9446 12.6111 -4.6024 21 6 1.5928 12.7826 -6.6288 22 7 1.2825 12.5903 -7.8923 23 14 3.2387 13.5413 -6.1763 24 1 4.0061 12.5912 -5.3316 25 1 4.0059 13.8338 -7.4137 26 1 3.0127 14.8015 -5.4239 27 6 -1.8811 12.3618 -5.3967 28 6 -1.5715 12.5665 -6.8818 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 3.9996 0.9050 -0.7160 35 1 3.9283 2.4718 0.1262 36 1 3.8533 0.9567 1.0572 37 1 1.4873 1.5660 -2.0463 38 1 1.8731 3.8869 -3.3568 39 1 0.1566 3.7481 -2.9068 40 1 0.3277 5.8518 -1.6054 41 1 2.0443 5.9906 -2.0554 42 1 0.5210 5.7502 -4.4213 43 1 0.1106 10.1541 -4.1855 44 1 0.1115 10.0196 -7.0299 45 1 -1.5549 9.8832 -6.4193 46 1 1.9355 12.7744 -8.5856 47 1 -2.6834 11.6701 -5.1399 48 1 -1.7735 13.2228 -4.7369 49 1 -1.2605 13.5621 -7.1983 50 1 -2.1700 12.0096 -7.6027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325787853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:26 Heat of formation + Delta-G solvation = -103.208011 kcal Electronic energy + Delta-G solvation = -28677.181874 eV Core-core repulsion = 24511.629748 eV Total energy + Delta-G solvation = -4165.552126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.47139 -40.04915 -38.19612 -37.00787 -36.70422 -35.38195 -33.37605 -32.89896 -31.96550 -31.21675 -30.02171 -27.14194 -25.60184 -25.00523 -24.10984 -22.51056 -21.38831 -21.15965 -20.88389 -19.91113 -19.50210 -18.05291 -17.56629 -16.71736 -16.37464 -16.27932 -16.02989 -15.45796 -15.09860 -14.75119 -14.68701 -14.56385 -14.43926 -14.04997 -14.02271 -13.85056 -13.72213 -13.40713 -12.95958 -12.76305 -12.68505 -12.30544 -12.19340 -11.95427 -11.85240 -11.73232 -11.61246 -11.60575 -11.29921 -11.20952 -10.95291 -10.92142 -10.53521 -10.25342 -10.22807 -9.62132 -9.52736 -9.22542 -9.21075 -9.07357 -8.51801 -8.40992 -8.11375 -6.08145 -4.16998 1.82054 2.26754 2.45668 2.95343 3.30485 3.35082 3.38637 3.63244 4.02096 4.17439 4.33747 4.38222 4.47065 4.53671 4.59602 4.68172 4.92821 4.95664 5.02972 5.07897 5.10856 5.20857 5.26606 5.33910 5.38979 5.43007 5.58296 5.60030 5.69856 5.73910 5.80383 5.97189 6.08617 6.21985 6.27624 6.40565 6.45892 6.67965 6.76195 7.01023 7.05304 7.08259 7.22706 7.34939 7.49222 7.82120 7.82697 7.88526 8.17658 8.31950 8.56219 8.84869 9.50791 10.99853 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.001807 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.636389 B =15495.219688 C =16216.926813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.139 3.861 4 H 0.089 0.911 5 C -0.165 4.165 6 N -0.727 5.727 7 C 0.520 3.480 8 O -0.532 6.532 9 C -0.155 4.155 10 C 0.134 3.866 11 N -0.711 5.711 12 C 0.509 3.491 13 O -0.514 6.514 14 C 0.496 3.504 15 O -0.542 6.542 16 N -0.663 5.663 17 C 0.159 3.841 18 C 0.021 3.979 19 C -0.499 4.499 20 H 0.061 0.939 21 C 0.074 3.926 22 N -0.876 5.876 23 Si 0.890 3.110 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.211 4.211 28 C -0.141 4.141 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.400 0.600 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.411 0.589 43 H 0.414 0.586 44 H 0.078 0.922 45 H 0.043 0.957 46 H 0.262 0.738 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.087 0.913 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 -26.036 11.199 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C 0.035 3.965 4 H 0.107 0.893 5 C -0.224 4.224 6 N -0.380 5.380 7 C 0.305 3.695 8 O -0.408 6.408 9 C -0.196 4.196 10 C 0.010 3.990 11 N -0.366 5.366 12 C 0.290 3.710 13 O -0.389 6.389 14 C 0.276 3.724 15 O -0.421 6.421 16 N -0.313 5.313 17 C 0.037 3.963 18 C 0.020 3.980 19 C -0.537 4.537 20 H 0.079 0.921 21 C -0.130 4.130 22 N -0.512 5.512 23 Si 0.718 3.282 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 C -0.248 4.248 28 C -0.179 4.179 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.234 0.766 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.247 0.753 43 H 0.250 0.750 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.105 0.895 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.723 -25.398 11.736 27.988 hybrid contribution 0.935 0.031 -0.358 1.002 sum 0.213 -25.367 11.378 27.803 Atomic orbital electron populations 1.21784 0.95203 1.01807 1.02346 1.21842 0.96645 0.95314 1.03132 1.21025 0.95023 0.93043 0.87446 0.89284 1.22192 0.95257 1.02860 1.02043 1.46089 1.71159 1.06927 1.13776 1.20387 0.76694 0.82222 0.90154 1.90766 1.49368 1.63916 1.36723 1.21833 1.04745 0.96173 0.96828 1.21067 1.02762 0.89249 0.85934 1.45683 1.70048 1.06775 1.14066 1.20481 0.78230 0.82833 0.89490 1.90774 1.47832 1.64032 1.36228 1.19880 0.80140 0.84113 0.88298 1.90706 1.52537 1.64665 1.34172 1.45828 1.61716 1.06148 1.17576 1.21166 0.96621 0.93207 0.85322 1.19037 0.90092 0.88841 1.00014 1.20326 1.00602 1.39799 0.92932 0.92064 1.24979 0.98228 0.94890 0.94929 1.69980 1.34215 1.47820 0.99146 0.86689 0.83878 0.79890 0.77788 1.20125 1.21288 1.20128 1.23067 1.00905 1.03423 0.97398 1.22476 1.02723 1.02044 0.90701 0.92497 0.92531 0.92482 0.91359 0.90337 0.92448 0.91867 0.91603 0.76554 0.87794 0.87860 0.90175 0.90165 0.75321 0.74959 0.90355 0.93911 0.92825 0.91578 0.90203 0.89481 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.80 37.16 0.36 -0.26 16 2 C -0.13 -0.48 5.47 -26.73 -0.15 -0.63 16 3 C 0.14 0.81 2.57 -67.93 -0.17 0.64 16 4 H 0.09 0.71 7.58 -51.93 -0.39 0.31 16 5 C -0.17 -0.98 9.48 37.16 0.35 -0.63 16 6 N -0.73 -4.06 4.53 -53.81 -0.24 -4.30 16 7 C 0.52 4.44 7.79 -10.98 -0.09 4.36 16 8 O -0.53 -6.94 15.64 5.55 0.09 -6.86 16 9 C -0.16 -1.03 5.81 -27.89 -0.16 -1.19 16 10 C 0.13 1.46 4.96 -4.05 -0.02 1.44 16 11 N -0.71 -8.80 5.55 -60.73 -0.34 -9.14 16 12 C 0.51 8.52 7.89 -11.59 -0.09 8.43 16 13 O -0.51 -9.88 16.49 5.50 0.09 -9.79 16 14 C 0.50 9.43 7.88 -11.59 -0.09 9.34 16 15 O -0.54 -10.99 16.46 5.49 0.09 -10.90 16 16 N -0.66 -13.50 5.37 -60.73 -0.33 -13.83 16 17 C 0.16 3.54 5.57 -4.04 -0.02 3.51 16 18 C 0.02 0.49 1.51 -155.66 -0.23 0.26 16 19 C -0.50 -13.01 8.38 -34.44 -0.29 -13.30 16 20 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 21 C 0.07 1.98 5.43 -17.82 -0.10 1.88 16 22 N -0.88 -24.21 12.72 55.43 0.71 -23.51 16 23 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.21 -4.39 9.94 -26.69 -0.27 -4.66 16 28 C -0.14 -3.19 9.26 -26.69 -0.25 -3.44 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.23 7.75 -51.93 -0.40 -0.17 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.40 1.15 8.60 -40.82 -0.35 0.80 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.41 4.27 7.96 -40.82 -0.32 3.94 16 43 H 0.41 8.39 7.73 -40.82 -0.32 8.08 16 44 H 0.08 1.96 8.09 -51.93 -0.42 1.54 16 45 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 46 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 49 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 50 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 423.37 15.07 6.38 6.38 Total: -1.00 -32.60 423.37 -8.30 -40.90 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -8.51 Total: 9.32 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.21 Total: 5.74 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.20 Total: -50.78 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: 0.27 Total: -27.55 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -32.60 -8.30 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325787853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.312 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds