Wall clock time and date at job start Tue Mar 31 2020 23:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47546 * 2 1 4 4 H 1.09003 * 109.47028 * 55.00141 * 3 2 1 5 5 C 1.53001 * 109.47194 * 174.99862 * 3 2 1 6 6 N 1.46494 * 109.46939 * 295.00144 * 3 2 1 7 7 C 1.34783 * 119.99852 * 155.00485 * 6 3 2 8 8 O 1.21284 * 120.00112 * 359.97438 * 7 6 3 9 9 C 1.50702 * 120.00084 * 179.72327 * 7 6 3 10 10 C 1.52990 * 109.47155 * 180.27082 * 9 7 6 11 11 N 1.46503 * 109.47245 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00208 * 179.97438 * 11 10 9 13 13 O 1.21346 * 119.99694 * 0.02562 * 12 11 10 14 14 C 1.49445 * 120.00099 * 180.02562 * 12 11 10 15 15 O 1.21354 * 120.00074 * 354.48797 * 14 12 11 16 16 N 1.34772 * 120.00232 * 174.49242 * 14 12 11 17 17 C 1.46500 * 120.00213 * 185.59138 * 16 14 12 18 18 C 1.53001 * 109.47297 * 185.19123 * 17 16 14 19 19 C 1.50697 * 115.54977 * 57.83559 * 18 17 16 20 20 H 1.07996 * 120.00517 * 264.65789 * 19 18 17 21 21 C 1.37880 * 120.00032 * 84.65367 * 19 18 17 22 22 N 1.31519 * 119.99481 * 1.97507 * 21 19 18 23 23 Si 1.86800 * 120.00243 * 181.97437 * 21 19 18 24 24 H 1.48497 * 109.46734 * 60.00254 * 23 21 19 25 25 H 1.48501 * 109.47137 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46943 * 300.00000 * 23 21 19 27 27 C 1.53003 * 117.49999 * 272.16730 * 18 17 16 28 28 C 1.52999 * 117.49785 * 203.50668 * 18 17 16 29 29 H 1.08997 * 109.46661 * 300.00313 * 1 2 3 30 30 H 1.09004 * 109.46695 * 59.99423 * 1 2 3 31 31 H 1.08991 * 109.47513 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46661 * 239.99687 * 2 1 3 33 33 H 1.09004 * 109.46695 * 120.00577 * 2 1 3 34 34 H 1.09002 * 109.47052 * 59.99670 * 5 3 2 35 35 H 1.08998 * 109.47153 * 180.02562 * 5 3 2 36 36 H 1.09006 * 109.46797 * 300.00465 * 5 3 2 37 37 H 0.96998 * 120.00447 * 334.99194 * 6 3 2 38 38 H 1.09001 * 109.46524 * 300.27048 * 9 7 6 39 39 H 1.09002 * 109.47275 * 60.26771 * 9 7 6 40 40 H 1.09001 * 109.47376 * 299.99444 * 10 9 7 41 41 H 1.09002 * 109.47283 * 59.99693 * 10 9 7 42 42 H 0.96996 * 119.99517 * 0.02562 * 11 10 9 43 43 H 0.96998 * 119.99848 * 5.58156 * 16 14 12 44 44 H 1.09002 * 109.47278 * 305.19304 * 17 16 14 45 45 H 1.09003 * 109.46950 * 65.19408 * 17 16 14 46 46 H 0.97004 * 119.99816 * 185.01242 * 22 21 19 47 47 H 1.09005 * 117.49925 * 0.02562 * 27 18 17 48 48 H 1.09002 * 117.49737 * 145.01963 * 27 18 17 49 49 H 1.09006 * 117.49914 * 214.97495 * 28 18 17 50 50 H 1.08996 * 117.50264 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6056 1.9815 0.8419 5 6 3.5650 1.4442 0.1258 6 7 1.6526 2.0974 -1.2518 7 6 1.5260 3.4384 -1.2995 8 8 1.7324 4.1028 -0.3061 9 6 1.1333 4.1127 -2.5888 10 6 1.0675 5.6260 -2.3734 11 7 0.6865 6.2816 -3.6269 12 6 0.5647 7.6229 -3.6760 13 8 0.7712 8.2876 -2.6820 14 6 0.1755 8.2917 -4.9545 15 8 0.0665 7.6391 -5.9719 16 7 -0.0545 9.6194 -4.9778 17 6 -0.5541 10.2550 -6.1995 18 6 -0.6056 11.7713 -6.0012 19 6 0.7032 12.4241 -5.6383 20 1 0.9446 12.6111 -4.6024 21 6 1.5928 12.7826 -6.6288 22 7 1.2825 12.5903 -7.8923 23 14 3.2387 13.5413 -6.1763 24 1 4.0061 12.5912 -5.3316 25 1 4.0059 13.8338 -7.4137 26 1 3.0127 14.8015 -5.4239 27 6 -1.8811 12.3618 -5.3967 28 6 -1.5715 12.5665 -6.8818 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 3.9996 0.9050 -0.7160 35 1 3.9283 2.4718 0.1262 36 1 3.8533 0.9567 1.0572 37 1 1.4873 1.5660 -2.0463 38 1 1.8731 3.8869 -3.3568 39 1 0.1566 3.7481 -2.9068 40 1 0.3277 5.8518 -1.6054 41 1 2.0443 5.9906 -2.0554 42 1 0.5210 5.7502 -4.4213 43 1 0.1106 10.1541 -4.1855 44 1 0.1115 10.0196 -7.0299 45 1 -1.5549 9.8832 -6.4193 46 1 1.9355 12.7744 -8.5856 47 1 -2.6834 11.6701 -5.1399 48 1 -1.7735 13.2228 -4.7369 49 1 -1.2605 13.5621 -7.1983 50 1 -2.1700 12.0096 -7.6027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325787853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:25 Heat of formation + Delta-G solvation = -127.195709 kcal Electronic energy + Delta-G solvation = -28678.222059 eV Core-core repulsion = 24511.629748 eV Total energy + Delta-G solvation = -4166.592311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.67852 -40.94053 -39.67020 -38.45221 -37.60038 -36.50515 -34.96678 -33.97170 -33.49317 -31.96293 -30.56525 -28.75100 -27.45675 -26.14304 -24.68936 -23.65172 -22.89497 -21.96269 -21.57036 -21.40360 -21.08571 -19.54708 -18.37862 -17.99574 -17.62115 -17.33728 -17.12206 -16.71107 -16.54965 -16.33831 -16.10184 -15.65244 -15.36137 -15.06702 -14.89402 -14.71357 -14.57163 -14.40774 -14.29400 -14.22833 -13.70013 -13.48586 -13.27020 -12.97648 -12.93556 -12.83032 -12.77393 -12.67174 -12.52147 -12.40659 -12.24963 -12.00810 -11.95023 -11.62187 -11.43273 -11.00837 -10.97411 -10.71287 -10.42241 -10.38040 -10.17511 -10.08380 -9.88079 -8.11749 -6.23975 0.38271 1.30438 1.41385 1.42930 1.49109 1.62082 2.17084 2.20619 2.41595 2.78590 3.16914 3.42680 3.57953 3.63862 3.76200 3.99361 4.02875 4.11192 4.20014 4.21881 4.47849 4.51627 4.52058 4.64621 4.64774 4.67992 4.75447 4.80023 4.82844 4.87204 4.94454 4.99929 5.03509 5.12171 5.14314 5.19101 5.28047 5.29534 5.36857 5.42426 5.55033 5.58388 5.68278 5.76453 5.98909 6.35603 6.47658 6.56508 6.78974 6.82609 7.01319 7.27259 7.45395 8.95492 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.001807 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.636389 B =15495.219688 C =16216.926813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.137 3.863 4 H 0.063 0.937 5 C -0.162 4.162 6 N -0.710 5.710 7 C 0.517 3.483 8 O -0.586 6.586 9 C -0.143 4.143 10 C 0.134 3.866 11 N -0.684 5.684 12 C 0.513 3.487 13 O -0.544 6.544 14 C 0.498 3.502 15 O -0.554 6.554 16 N -0.669 5.669 17 C 0.174 3.826 18 C -0.006 4.006 19 C -0.505 4.505 20 H 0.056 0.944 21 C 0.029 3.971 22 N -0.902 5.902 23 Si 0.943 3.057 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.271 1.271 27 C -0.182 4.182 28 C -0.146 4.146 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.417 0.583 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.424 0.576 43 H 0.414 0.586 44 H 0.044 0.956 45 H 0.059 0.941 46 H 0.260 0.740 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -28.447 11.212 30.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C 0.032 3.968 4 H 0.081 0.919 5 C -0.220 4.220 6 N -0.362 5.362 7 C 0.303 3.697 8 O -0.466 6.466 9 C -0.182 4.182 10 C 0.011 3.989 11 N -0.339 5.339 12 C 0.293 3.707 13 O -0.421 6.421 14 C 0.278 3.722 15 O -0.434 6.434 16 N -0.318 5.318 17 C 0.051 3.949 18 C -0.007 4.007 19 C -0.543 4.543 20 H 0.074 0.926 21 C -0.172 4.172 22 N -0.539 5.539 23 Si 0.769 3.231 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.196 1.196 27 C -0.219 4.219 28 C -0.185 4.185 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.255 0.745 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.263 0.737 43 H 0.250 0.750 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.112 0.888 48 H 0.099 0.901 49 H 0.082 0.918 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.111 -27.890 11.721 30.274 hybrid contribution 1.037 0.699 -0.329 1.294 sum -0.074 -27.191 11.392 29.481 Atomic orbital electron populations 1.21792 0.95463 1.02222 1.01744 1.21791 0.96272 0.93586 1.04369 1.21042 0.94929 0.94145 0.86661 0.91923 1.22155 0.95238 1.01321 1.03265 1.45967 1.69658 1.06150 1.14475 1.20715 0.76019 0.82909 0.90017 1.90756 1.51996 1.65187 1.38648 1.21782 1.07456 0.92531 0.96468 1.21096 1.01139 0.92096 0.84617 1.45562 1.67823 1.05280 1.15202 1.20066 0.78558 0.84061 0.88040 1.90771 1.49674 1.64944 1.36691 1.20239 0.79276 0.83623 0.89022 1.90693 1.52915 1.64819 1.34940 1.45780 1.62288 1.06800 1.16927 1.20827 0.96564 0.92566 0.84946 1.19110 0.90177 0.89525 1.01891 1.20592 1.01825 1.39297 0.92582 0.92612 1.25609 1.00995 0.95617 0.95020 1.70077 1.34926 1.49183 0.99717 0.85856 0.80680 0.79172 0.77373 1.20335 1.21191 1.19611 1.23062 0.99729 1.03214 0.95886 1.22399 1.02962 1.00876 0.92220 0.93872 0.92411 0.91540 0.89571 0.89624 0.91006 0.94709 0.90622 0.74512 0.84976 0.84634 0.91566 0.92104 0.73739 0.74954 0.93798 0.92329 0.93125 0.88829 0.90105 0.91805 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.80 71.98 0.71 -0.27 16 2 C -0.12 -0.63 5.47 30.59 0.17 -0.46 16 3 C 0.14 1.46 2.57 44.99 0.12 1.57 16 4 H 0.06 1.03 7.58 -2.39 -0.02 1.01 16 5 C -0.16 -1.78 9.48 71.98 0.68 -1.10 16 6 N -0.71 -6.59 4.53 -442.53 -2.00 -8.59 16 7 C 0.52 8.24 7.79 87.66 0.68 8.92 16 8 O -0.59 -15.69 15.64 -3.04 -0.05 -15.73 16 9 C -0.14 -1.51 5.81 29.85 0.17 -1.34 16 10 C 0.13 2.79 4.96 86.38 0.43 3.22 16 11 N -0.68 -15.81 5.55 -464.42 -2.58 -18.38 16 12 C 0.51 16.78 7.89 87.27 0.69 17.47 16 13 O -0.54 -20.90 16.49 -3.24 -0.05 -20.95 16 14 C 0.50 18.58 7.88 87.27 0.69 19.27 16 15 O -0.55 -21.91 16.46 -3.26 -0.05 -21.96 16 16 N -0.67 -27.01 5.37 -464.41 -2.49 -29.51 16 17 C 0.17 7.69 5.57 86.38 0.48 8.17 16 18 C -0.01 -0.29 1.51 -52.93 -0.08 -0.37 16 19 C -0.51 -26.45 8.38 25.60 0.21 -26.24 16 20 H 0.06 2.91 7.81 -2.91 -0.02 2.89 16 21 C 0.03 1.54 5.43 84.65 0.46 2.00 16 22 N -0.90 -50.57 12.72 21.45 0.27 -50.30 16 23 Si 0.94 43.49 29.54 68.60 2.03 45.51 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 C -0.18 -7.27 9.94 30.62 0.30 -6.97 16 28 C -0.15 -6.54 9.26 30.62 0.28 -6.26 16 29 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.35 7.75 -2.39 -0.02 0.33 16 31 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.03 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.42 1.03 8.60 -92.71 -0.80 0.23 16 38 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 41 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 42 H 0.42 7.66 7.96 -92.71 -0.74 6.92 16 43 H 0.41 16.77 7.73 -92.71 -0.72 16.05 16 44 H 0.04 2.23 8.09 -2.39 -0.02 2.21 16 45 H 0.06 2.37 8.11 -2.39 -0.02 2.35 16 46 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 47 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 48 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 49 H 0.06 3.13 8.14 -2.38 -0.02 3.11 16 50 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -72.54 423.37 -0.22 -72.77 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -1.29 Total: 29.54 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 6.00 Total: 17.61 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -6.80 Total: -106.78 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -0.15 Total: -58.65 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -72.54 -0.22 -72.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325787853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.431 kcal (2) G-P(sol) polarization free energy of solvation -72.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds