Wall clock time and date at job start Tue Mar 31 2020 22:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 C 1.52996 * 109.47052 * 239.99403 * 2 1 3 5 5 N 1.46502 * 109.46974 * 119.99869 * 2 1 3 6 6 C 1.46763 * 124.35215 * 59.99783 * 5 2 1 7 7 C 1.54475 * 105.47555 * 162.98104 * 6 5 2 8 8 C 1.54629 * 101.76404 * 25.41765 * 7 6 5 9 9 H 1.09005 * 110.48639 * 216.39246 * 8 7 6 10 10 N 1.46500 * 110.48853 * 93.88212 * 8 7 6 11 11 C 1.34777 * 120.00376 * 156.84091 * 10 8 7 12 12 O 1.21352 * 119.99754 * 0.02562 * 11 10 8 13 13 C 1.49441 * 120.00194 * 179.97438 * 11 10 8 14 14 O 1.21352 * 120.00052 * 0.02562 * 13 11 10 15 15 N 1.34777 * 120.00194 * 179.97438 * 13 11 10 16 16 C 1.46500 * 120.00376 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.47473 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46725 * 60.00093 * 23 21 19 25 25 H 1.48505 * 109.46988 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47116 * 300.00069 * 23 21 19 27 27 C 1.34745 * 124.29856 * 239.96006 * 5 2 1 28 28 O 1.21289 * 125.12276 * 0.41883 * 27 5 2 29 29 H 1.09004 * 109.46669 * 300.00183 * 1 2 3 30 30 H 1.08996 * 109.47021 * 60.00125 * 1 2 3 31 31 H 1.09003 * 109.47178 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47014 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46649 * 299.99549 * 3 2 1 34 34 H 1.08997 * 109.47144 * 59.99646 * 3 2 1 35 35 H 1.08994 * 109.47456 * 300.00339 * 4 2 1 36 36 H 1.09001 * 109.47275 * 60.00212 * 4 2 1 37 37 H 1.09001 * 109.47111 * 179.97438 * 4 2 1 38 38 H 1.09007 * 110.24380 * 43.98206 * 6 5 2 39 39 H 1.09001 * 110.32233 * 282.02346 * 6 5 2 40 40 H 1.08999 * 110.97123 * 267.30066 * 7 6 5 41 41 H 1.08997 * 111.00687 * 143.54925 * 7 6 5 42 42 H 0.97004 * 119.99396 * 336.83865 * 10 8 7 43 43 H 0.97004 * 120.00228 * 0.02562 * 15 13 11 44 44 H 1.09002 * 109.47129 * 59.99747 * 16 15 13 45 45 H 1.08998 * 109.46845 * 300.00553 * 16 15 13 46 46 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 47 47 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 48 48 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 49 49 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 50 50 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 2.0183 -0.6906 1.1962 6 6 1.7231 -2.0907 1.5227 7 6 2.7664 -2.4943 2.5880 8 6 3.1160 -1.1274 3.2207 9 1 4.1740 -1.0863 3.4797 10 7 2.2895 -0.8844 4.4056 11 6 2.7116 -0.0292 5.3579 12 8 3.7762 0.5400 5.2336 13 6 1.8683 0.2190 6.5664 14 8 0.8035 -0.3498 6.6905 15 7 2.2906 1.0739 7.5189 16 6 1.4641 1.3168 8.7039 17 6 2.1679 2.3202 9.6197 18 6 1.3050 2.5734 10.8575 19 6 1.9980 3.5623 11.7592 20 1 2.9580 3.9691 11.4777 21 6 1.4063 3.9476 12.9435 22 7 0.2370 3.4526 13.2859 23 14 2.2656 5.1728 14.0615 24 1 2.4716 6.4494 13.3312 25 1 1.4275 5.4196 15.2623 26 1 3.5806 4.6239 14.4794 27 6 2.7968 -0.1211 2.1371 28 8 3.1847 1.0279 2.1201 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2076 -2.1392 37 1 3.1300 -0.7210 -1.2494 38 1 1.8289 -2.7152 0.6355 39 1 0.7155 -2.1804 1.9285 40 1 3.6436 -2.9450 2.1238 41 1 2.3302 -3.1661 3.3272 42 1 1.4384 -1.3391 4.5048 43 1 3.1419 1.5283 7.4200 44 1 1.3126 0.3797 9.2395 45 1 0.4990 1.7201 8.3972 46 1 2.3191 3.2573 9.0838 47 1 3.1332 1.9173 9.9263 48 1 0.3396 2.9762 10.5512 49 1 1.1542 1.6363 11.3932 50 1 -0.1794 3.7240 14.1189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326880322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:47 Heat of formation + Delta-G solvation = -138.020528 kcal Electronic energy + Delta-G solvation = -29494.288021 eV Core-core repulsion = 25327.226311 eV Total energy + Delta-G solvation = -4167.061710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.29975 -41.39521 -39.65294 -37.86750 -37.49273 -37.05821 -35.33886 -34.61817 -33.06041 -30.83470 -29.17111 -28.69083 -28.23881 -27.92341 -26.06710 -24.27571 -23.26626 -22.39325 -22.16229 -21.54038 -19.70951 -19.65302 -18.56734 -18.30526 -17.63894 -17.33683 -17.18579 -16.58175 -16.46739 -16.28973 -16.10944 -15.79028 -15.36534 -15.08466 -15.04412 -14.81882 -14.62055 -14.28767 -14.22758 -14.05345 -13.79753 -13.53155 -13.37940 -13.05986 -12.96316 -12.90610 -12.74009 -12.66575 -12.56834 -12.44863 -12.44607 -12.37378 -12.05651 -12.02023 -11.71230 -11.57252 -11.31369 -11.25843 -10.77753 -10.54731 -10.34196 -10.07430 -9.68472 -8.19823 -6.30743 0.21752 0.92797 1.41393 1.44093 1.51887 1.62129 1.86224 2.06838 2.41292 2.61650 3.13801 3.23924 3.31303 3.37284 3.75739 3.86881 3.90880 4.05506 4.05960 4.11664 4.16334 4.46216 4.50788 4.58590 4.63428 4.68413 4.76584 4.82175 4.82738 4.84786 4.89882 4.91199 4.93402 4.97562 5.12111 5.13358 5.17136 5.19479 5.24378 5.36209 5.50400 5.66669 5.69752 5.77952 5.83578 6.07822 6.21319 6.25443 6.61636 6.82819 6.85616 7.10016 7.38361 8.91752 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.001764 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.460647 B =15870.855568 C =16109.193723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.165 3.835 3 C -0.138 4.138 4 C -0.149 4.149 5 N -0.604 5.604 6 C 0.091 3.909 7 C -0.123 4.123 8 C 0.107 3.893 9 H 0.114 0.886 10 N -0.673 5.673 11 C 0.513 3.487 12 O -0.528 6.528 13 C 0.505 3.495 14 O -0.542 6.542 15 N -0.687 5.687 16 C 0.128 3.872 17 C -0.107 4.107 18 C 0.026 3.974 19 C -0.544 4.544 20 H 0.063 0.937 21 C -0.001 4.001 22 N -0.932 5.932 23 Si 0.965 3.035 24 H -0.268 1.268 25 H -0.284 1.284 26 H -0.267 1.267 27 C 0.493 3.507 28 O -0.557 6.557 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.426 0.574 43 H 0.418 0.582 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.068 0.932 48 H -0.004 1.004 49 H -0.001 1.001 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 -17.774 -33.043 37.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.082 3.918 3 C -0.195 4.195 4 C -0.207 4.207 5 N -0.338 5.338 6 C -0.031 4.031 7 C -0.161 4.161 8 C -0.001 4.001 9 H 0.131 0.869 10 N -0.329 5.329 11 C 0.293 3.707 12 O -0.404 6.404 13 C 0.285 3.715 14 O -0.421 6.421 15 N -0.339 5.339 16 C 0.005 3.995 17 C -0.145 4.145 18 C -0.012 4.012 19 C -0.582 4.582 20 H 0.081 0.919 21 C -0.199 4.199 22 N -0.572 5.572 23 Si 0.790 3.210 24 H -0.193 1.193 25 H -0.209 1.209 26 H -0.191 1.191 27 C 0.278 3.722 28 O -0.435 6.435 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.106 0.894 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.265 0.735 43 H 0.255 0.745 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.014 0.986 49 H 0.017 0.983 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.694 -17.125 -33.000 37.276 hybrid contribution 0.166 1.132 1.076 1.570 sum 2.860 -15.994 -31.923 35.820 Atomic orbital electron populations 1.22153 0.92807 1.03583 1.02452 1.20657 0.94827 0.91878 0.84391 1.22015 1.00969 0.95169 1.01353 1.22122 1.01158 1.01660 0.95734 1.48685 1.49188 1.13996 1.21950 1.22456 0.99806 0.80304 1.00487 1.23042 1.01665 0.92857 0.98506 1.21918 0.98032 0.96799 0.83344 0.86852 1.45401 1.24789 1.44252 1.18457 1.20133 0.85954 0.80279 0.84309 1.90805 1.23231 1.48016 1.78322 1.20160 0.86236 0.80724 0.84351 1.90743 1.23099 1.49611 1.78598 1.45909 1.24553 1.43278 1.20142 1.21501 0.93963 0.99771 0.84280 1.21652 0.99430 0.97727 0.95697 1.18926 0.94581 0.95490 0.92214 1.21647 1.05654 1.25800 1.05139 0.91896 1.25974 0.95661 0.98541 0.99706 1.70084 1.17430 1.45354 1.24304 0.85501 0.78508 0.79204 0.77823 1.19326 1.20926 1.19137 1.21664 0.78362 0.87931 0.84263 1.90753 1.55228 1.19607 1.77862 0.94213 0.89955 0.90072 0.93550 0.90521 0.94601 0.89954 0.90074 0.93078 0.86769 0.89383 0.85853 0.85583 0.73491 0.74466 0.91221 0.91793 0.91777 0.91363 0.98557 0.98277 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.54 71.98 0.61 -0.84 16 2 C 0.17 2.07 1.20 3.60 0.00 2.08 16 3 C -0.14 -2.63 7.00 71.98 0.50 -2.12 16 4 C -0.15 -1.04 8.49 71.98 0.61 -0.43 16 5 N -0.60 -8.07 2.77 -770.55 -2.13 -10.21 16 6 C 0.09 0.38 6.60 86.83 0.57 0.95 16 7 C -0.12 -0.47 6.78 31.65 0.21 -0.26 16 8 C 0.11 1.69 3.24 44.98 0.15 1.84 16 9 H 0.11 2.09 7.61 -2.38 -0.02 2.07 16 10 N -0.67 -12.77 5.10 -443.90 -2.27 -15.04 16 11 C 0.51 13.93 7.89 87.27 0.69 14.62 16 12 O -0.53 -17.23 16.16 -3.25 -0.05 -17.28 16 13 C 0.50 15.20 7.89 87.27 0.69 15.89 16 14 O -0.54 -17.90 16.48 -3.25 -0.05 -17.96 16 15 N -0.69 -21.06 5.55 -464.42 -2.58 -23.63 16 16 C 0.13 4.46 5.67 86.38 0.49 4.95 16 17 C -0.11 -4.23 5.27 30.59 0.16 -4.07 16 18 C 0.03 1.33 4.97 29.85 0.15 1.48 16 19 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 20 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 21 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 22 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 23 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 C 0.49 10.70 7.49 87.85 0.66 11.36 16 28 O -0.56 -18.04 14.02 -3.06 -0.04 -18.09 16 29 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.45 7.90 -2.39 -0.02 0.43 16 32 H 0.05 1.08 7.08 -2.39 -0.02 1.06 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 0.91 7.06 -2.39 -0.02 0.90 16 35 H 0.08 0.23 7.21 -2.39 -0.02 0.21 16 36 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.11 -0.11 7.12 -2.38 -0.02 -0.13 16 39 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.13 0.00 8.05 -2.39 -0.02 -0.02 16 42 H 0.43 6.30 8.08 -92.71 -0.75 5.55 16 43 H 0.42 11.89 7.94 -92.71 -0.74 11.15 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 49 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 50 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -80.44 409.77 0.85 -79.59 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.53 Total: 17.31 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 6.20 Total: 15.33 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -6.69 Total: -105.31 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -0.15 Total: -53.32 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -80.44 0.85 -79.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326880322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.428 kcal (2) G-P(sol) polarization free energy of solvation -80.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds