Wall clock time and date at job start Tue Mar 31 2020 23:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 C 1.50706 * 109.46573 * 119.99925 * 2 1 3 5 5 O 1.21274 * 120.00042 * 359.72068 * 4 2 1 6 6 N 1.34777 * 119.99766 * 179.97438 * 4 2 1 7 7 C 1.46496 * 120.00266 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47425 * 180.02562 * 7 6 4 9 9 H 1.09003 * 109.82064 * 305.69989 * 8 7 6 10 10 C 1.54462 * 109.83181 * 184.81272 * 8 7 6 11 11 C 1.55622 * 102.30042 * 219.18090 * 10 8 7 12 12 C 1.54013 * 100.83376 * 33.02030 * 11 10 8 13 13 C 1.52944 * 115.12815 * 95.14960 * 12 11 10 14 14 N 1.48147 * 85.86995 * 93.41920 * 13 12 11 15 15 C 1.46893 * 111.00343 * 136.93345 * 14 13 12 16 16 C 1.50700 * 109.47117 * 70.44474 * 15 14 13 17 17 O 1.21301 * 119.99908 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00556 * 180.02562 * 16 15 14 19 19 C 1.37090 * 120.00359 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00095 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00351 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99276 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00250 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47236 * 90.00153 * 23 21 19 25 25 H 1.48502 * 109.47140 * 209.99716 * 23 21 19 26 26 H 1.48499 * 109.47419 * 329.99818 * 23 21 19 27 27 C 1.48154 * 90.92751 * 23.97091 * 14 13 12 28 28 O 1.42550 * 106.47453 * 324.88390 * 12 11 10 29 29 H 1.09001 * 109.47362 * 300.00732 * 1 2 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 1 2 3 31 31 H 1.09000 * 109.47486 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47362 * 239.99268 * 2 1 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 3 2 1 35 35 H 1.08996 * 109.46952 * 59.99813 * 3 2 1 36 36 H 0.96999 * 120.00043 * 0.02562 * 6 4 2 37 37 H 1.09004 * 109.47212 * 300.00463 * 7 6 4 38 38 H 1.09000 * 109.46684 * 60.00307 * 7 6 4 39 39 H 1.08996 * 110.82594 * 337.35443 * 10 8 7 40 40 H 1.09006 * 110.82252 * 100.91067 * 10 8 7 41 41 H 1.09000 * 111.09109 * 275.13717 * 11 10 8 42 42 H 1.09009 * 111.17629 * 150.93202 * 11 10 8 43 43 H 1.08996 * 113.81137 * 207.66110 * 13 12 11 44 44 H 1.09003 * 113.80821 * 339.18237 * 13 12 11 45 45 H 1.08998 * 109.47944 * 190.44742 * 15 14 13 46 46 H 1.09004 * 109.47199 * 310.45155 * 15 14 13 47 47 H 0.97005 * 119.99435 * 359.97438 * 18 16 15 48 48 H 0.97006 * 119.99921 * 180.02562 * 22 21 19 49 49 H 1.09003 * 113.80515 * 221.78623 * 27 14 13 50 50 H 1.09005 * 113.91501 * 90.28262 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 1.2441 -1.1669 2.0313 6 7 3.3573 -0.8341 1.4436 7 6 3.8456 -1.5241 2.6401 8 6 5.3756 -1.5243 2.6401 9 1 5.7452 -1.9468 1.7057 10 6 5.8995 -2.3533 3.8334 11 6 7.1208 -1.5143 4.3092 12 6 6.6348 -0.0884 3.9890 13 6 5.9818 0.6528 5.1567 14 7 7.3301 1.2082 5.4183 15 6 7.2578 2.6426 5.7266 16 6 6.6260 2.8341 7.0813 17 8 6.2713 1.8702 7.7268 18 7 6.4551 4.0761 7.5759 19 6 5.8809 4.2502 8.8085 20 1 5.5651 3.3920 9.3832 21 6 5.7041 5.5308 9.3181 22 7 6.0880 6.5750 8.6186 23 14 4.9211 5.7680 10.9973 24 1 5.9776 5.7672 12.0408 25 1 4.1970 7.0642 11.0272 26 1 3.9660 4.6614 11.2590 27 6 7.7213 0.9877 4.0065 28 8 5.8627 -0.1832 2.7945 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.9876 -0.4655 0.8052 37 1 3.4826 -1.0097 3.5299 38 1 3.4818 -2.5517 2.6407 39 1 5.1465 -2.4211 4.6186 40 1 6.2123 -3.3456 3.5083 41 1 8.0145 -1.7632 3.7370 42 1 7.2928 -1.6405 5.3782 43 1 5.2501 1.3999 4.8496 44 1 5.6160 -0.0045 5.9456 45 1 8.2629 3.0644 5.7316 46 1 6.6559 3.1469 4.9706 47 1 6.7391 4.8469 7.0599 48 1 5.9650 7.4690 8.9745 49 1 8.7311 0.5954 3.8859 50 1 7.5125 1.8345 3.3527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327343330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:51 Heat of formation + Delta-G solvation = -90.784336 kcal Electronic energy + Delta-G solvation = -29982.658197 eV Core-core repulsion = 25817.644802 eV Total energy + Delta-G solvation = -4165.013395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.02728 -40.00843 -38.49101 -37.23648 -34.82113 -34.72011 -33.88370 -32.41708 -31.31304 -30.61922 -28.44845 -27.33483 -26.12291 -25.53297 -24.40359 -23.08564 -22.38629 -21.59884 -19.99993 -19.35847 -19.12281 -17.87872 -17.45458 -17.11190 -16.25913 -16.17962 -16.04641 -15.64174 -15.15805 -14.84477 -14.56790 -14.32608 -14.15458 -13.95603 -13.72196 -13.40005 -13.36413 -13.08529 -12.87296 -12.60162 -12.56433 -12.39631 -12.23577 -12.18675 -11.89282 -11.78548 -11.57202 -11.51374 -11.42093 -11.36032 -11.32445 -11.04523 -10.84023 -10.45521 -10.38536 -10.20887 -9.90114 -9.58390 -9.48714 -9.26278 -8.72005 -8.25421 -7.96045 -6.41326 -3.82057 2.47424 2.93535 3.18369 3.26946 3.32891 3.46097 3.89448 4.00439 4.16929 4.30062 4.39281 4.42117 4.48397 4.57839 4.63036 4.66695 4.84121 4.96339 5.03295 5.10772 5.15299 5.24949 5.29964 5.31788 5.40523 5.43535 5.53082 5.55334 5.58616 5.63252 5.65784 5.69390 5.74369 5.77422 5.85070 5.86846 5.93828 5.97844 6.02590 6.18188 6.21699 6.26654 6.56054 6.92812 7.15013 7.29453 7.55615 8.05116 8.05905 8.61559 9.18268 9.54290 10.05895 10.76508 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010189 B = 0.002564 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.443053 B =10918.133253 C =12581.469430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 C -0.146 4.146 4 C 0.514 3.486 5 O -0.541 6.541 6 N -0.724 5.724 7 C 0.109 3.891 8 C 0.069 3.931 9 H 0.085 0.915 10 C -0.148 4.148 11 C -0.121 4.121 12 C 0.075 3.925 13 C 0.015 3.985 14 N -0.447 5.447 15 C 0.013 3.987 16 C 0.444 3.556 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.009 3.991 28 O -0.359 6.359 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.403 0.597 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.095 0.905 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 -13.804 -21.212 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 C -0.203 4.203 4 C 0.300 3.700 5 O -0.418 6.418 6 N -0.376 5.376 7 C -0.015 4.015 8 C 0.011 3.989 9 H 0.103 0.897 10 C -0.186 4.186 11 C -0.158 4.158 12 C 0.035 3.965 13 C -0.114 4.114 14 N -0.171 5.171 15 C -0.119 4.119 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.119 4.119 28 O -0.278 6.278 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.237 0.763 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.113 0.887 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.414 -14.663 -19.736 24.627 hybrid contribution -0.265 1.343 -0.251 1.392 sum -1.680 -13.320 -19.987 24.078 Atomic orbital electron populations 1.21617 0.92487 1.02748 1.02233 1.21303 0.98423 0.97404 0.96412 1.21802 1.01360 0.94034 1.03124 1.20741 0.82070 0.79395 0.87781 1.90707 1.55344 1.48735 1.47025 1.45919 1.07172 1.59004 1.25460 1.21810 0.93073 0.97771 0.88811 1.23011 0.92466 0.83970 0.99444 0.89708 1.23161 0.98558 0.99362 0.97492 1.22854 0.97464 0.91810 1.03720 1.23650 0.91924 0.95773 0.85153 1.24181 0.92426 0.98624 0.96167 1.68403 1.16591 1.13769 1.18342 1.22442 1.01861 0.90239 0.97379 1.19664 0.85305 0.84186 0.87934 1.90520 1.54949 1.39760 1.61098 1.41863 1.54089 1.05993 1.18140 1.19695 1.35594 0.93633 0.93860 0.87945 1.25261 0.97857 0.94925 0.99905 1.69616 1.47625 0.98679 1.38444 0.85858 0.79151 0.77726 0.81573 1.20381 1.20922 1.19411 1.24154 0.98994 0.97514 0.91283 1.88333 1.69122 1.28063 1.42265 0.91806 0.92051 0.92048 0.88688 0.91988 0.91373 0.91830 0.76280 0.90666 0.90543 0.89757 0.89615 0.90088 0.88457 0.90959 0.88488 0.89003 0.92701 0.77496 0.91877 0.88708 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.48 37.16 0.32 -0.79 16 2 C -0.11 -0.90 3.26 -91.77 -0.30 -1.20 16 3 C -0.15 -1.03 9.09 37.16 0.34 -0.70 16 4 C 0.51 5.76 7.15 -10.98 -0.08 5.68 16 5 O -0.54 -8.36 15.98 5.56 0.09 -8.27 16 6 N -0.72 -6.82 5.42 -60.29 -0.33 -7.15 16 7 C 0.11 1.10 5.21 -4.04 -0.02 1.07 16 8 C 0.07 0.61 3.57 -25.96 -0.09 0.52 16 9 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 10 C -0.15 -1.22 6.57 -24.57 -0.16 -1.38 16 11 C -0.12 -1.20 6.39 -24.81 -0.16 -1.36 16 12 C 0.08 0.92 1.47 -90.27 -0.13 0.79 16 13 C 0.01 0.24 6.24 -3.17 -0.02 0.22 16 14 N -0.45 -7.43 5.93 -245.01 -1.45 -8.89 16 15 C 0.01 0.23 5.30 -4.98 -0.03 0.21 16 16 C 0.44 10.66 7.59 -10.98 -0.08 10.58 16 17 O -0.58 -15.85 15.13 5.54 0.08 -15.77 16 18 N -0.56 -14.53 5.29 -10.96 -0.06 -14.59 16 19 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 20 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 23 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.01 0.12 7.53 -3.17 -0.02 0.10 16 28 O -0.36 -4.12 10.80 -35.23 -0.38 -4.50 16 29 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.40 7.56 -51.93 -0.39 0.01 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.40 2.94 7.89 -40.82 -0.32 2.62 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.10 1.09 8.05 -51.92 -0.42 0.67 16 43 H 0.07 1.25 7.79 -51.93 -0.40 0.85 16 44 H 0.10 1.71 8.07 -51.93 -0.42 1.29 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.05 0.92 7.71 -51.93 -0.40 0.52 16 47 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 50 H 0.08 0.92 7.80 -51.93 -0.41 0.51 16 LS Contribution 407.33 15.07 6.14 6.14 Total: -1.00 -34.33 407.33 -9.38 -43.71 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -8.49 Total: 11.44 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.69 Total: 5.65 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -1.11 Total: -54.71 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.21 Total: -28.54 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.33 -9.38 -43.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327343330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.072 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds