Wall clock time and date at job start Tue Mar 31 2020 23:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46969 * 2 1 4 4 C 1.50698 * 109.47492 * 120.00515 * 2 1 3 5 5 O 1.21280 * 119.99715 * 359.97438 * 4 2 1 6 6 N 1.34773 * 120.00111 * 180.02562 * 4 2 1 7 7 C 1.46494 * 120.00016 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47398 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47449 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.47294 * 180.02562 * 9 8 7 11 11 C 1.34767 * 120.00102 * 179.97438 * 10 9 8 12 12 O 1.21354 * 120.00305 * 359.97438 * 11 10 9 13 13 C 1.49453 * 120.00157 * 179.97438 * 11 10 9 14 14 O 1.21343 * 119.99993 * 354.99052 * 13 11 10 15 15 N 1.34775 * 119.99888 * 175.27015 * 13 11 10 16 16 C 1.46504 * 119.99706 * 185.50973 * 15 13 11 17 17 C 1.53008 * 109.46955 * 183.69064 * 16 15 13 18 18 C 1.50701 * 115.54928 * 306.41002 * 17 16 15 19 19 H 1.08002 * 119.99634 * 145.10991 * 18 17 16 20 20 C 1.37875 * 120.00330 * 325.11820 * 18 17 16 21 21 N 1.31516 * 119.99968 * 349.44791 * 20 18 17 22 22 Si 1.86800 * 120.00208 * 169.45448 * 20 18 17 23 23 H 1.48495 * 109.47255 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47158 * 119.99561 * 22 20 18 25 25 H 1.48504 * 109.46678 * 239.99419 * 22 20 18 26 26 C 1.52995 * 117.49680 * 160.74331 * 17 16 15 27 27 C 1.52996 * 117.49927 * 92.08407 * 17 16 15 28 28 H 1.09005 * 109.47129 * 299.99571 * 1 2 3 29 29 H 1.08999 * 109.47241 * 59.99129 * 1 2 3 30 30 H 1.08997 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46761 * 240.01018 * 2 1 3 32 32 H 1.08995 * 109.47140 * 300.00500 * 3 2 1 33 33 H 1.09005 * 109.46845 * 60.00255 * 3 2 1 34 34 H 1.09000 * 109.47226 * 179.97438 * 3 2 1 35 35 H 0.96998 * 120.00094 * 0.02562 * 6 4 2 36 36 H 1.08998 * 109.47309 * 59.99967 * 7 6 4 37 37 H 1.08999 * 109.47755 * 300.00062 * 7 6 4 38 38 H 1.08997 * 109.47235 * 60.00158 * 8 7 6 39 39 H 1.09005 * 109.47129 * 300.00135 * 8 7 6 40 40 H 1.08997 * 109.47052 * 59.99704 * 9 8 7 41 41 H 1.09005 * 109.46787 * 300.00003 * 9 8 7 42 42 H 0.97000 * 119.99937 * 359.97438 * 10 9 8 43 43 H 0.96998 * 120.00335 * 5.49933 * 15 13 11 44 44 H 1.08994 * 109.46955 * 303.69030 * 16 15 13 45 45 H 1.09000 * 109.47239 * 63.69225 * 16 15 13 46 46 H 0.96999 * 120.00319 * 185.02795 * 21 20 18 47 47 H 1.09004 * 117.50172 * 0.02562 * 26 17 16 48 48 H 1.09006 * 117.49733 * 145.01539 * 26 17 16 49 49 H 1.08996 * 117.49683 * 214.98053 * 27 17 16 50 50 H 1.08998 * 117.49786 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.2443 -1.1711 2.0289 6 7 3.3574 -0.8332 1.4438 7 6 3.8458 -1.5233 2.6401 8 6 5.3758 -1.5235 2.6401 9 6 5.8859 -2.2449 3.8892 10 7 7.3509 -2.2444 3.8894 11 6 8.0248 -2.8275 4.9004 12 8 7.4181 -3.3526 5.8108 13 6 9.5193 -2.8276 4.9003 14 8 10.1260 -2.3841 3.9476 15 7 10.1932 -3.3254 5.9560 16 6 11.6532 -3.2165 6.0105 17 6 12.1721 -3.9361 7.2572 18 6 11.5456 -3.5119 8.5605 19 1 11.3848 -4.2378 9.3438 20 6 11.1776 -2.1971 8.7529 21 7 11.5562 -1.2759 7.8940 22 14 10.1415 -1.7243 10.2335 23 1 9.8495 -2.9360 11.0407 24 1 10.8842 -0.7427 11.0643 25 1 8.8667 -1.1182 9.7722 26 6 13.6493 -4.3337 7.2798 27 6 12.5702 -5.4060 7.1101 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8932 -0.5137 -0.8901 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.1299 1.4426 0.0005 35 1 3.9877 -0.4638 0.8057 36 1 3.4828 -2.5511 2.6403 37 1 3.4823 -1.0095 3.5300 38 1 5.7392 -0.4959 2.6397 39 1 5.7391 -2.0376 1.7502 40 1 5.5225 -3.2725 3.8892 41 1 5.5226 -1.7310 4.7793 42 1 7.8359 -1.8244 3.1619 43 1 9.7116 -3.7557 6.6798 44 1 12.0851 -3.6742 5.1206 45 1 11.9378 -2.1652 6.0530 46 1 11.3601 -0.3418 8.0668 47 1 14.2516 -4.0823 6.4067 48 1 14.1679 -4.2888 8.2375 49 1 12.3793 -6.0662 7.9561 50 1 12.4620 -5.8606 6.1253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327367717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:28 Heat of formation + Delta-G solvation = -125.910024 kcal Electronic energy + Delta-G solvation = -28681.463634 eV Core-core repulsion = 24514.927074 eV Total energy + Delta-G solvation = -4166.536559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.58403 -40.93612 -39.67669 -38.43983 -37.43624 -35.78875 -35.43605 -34.76558 -34.15049 -32.28268 -28.72300 -28.03199 -27.60470 -27.02947 -24.73504 -23.52325 -22.93356 -22.84197 -21.28067 -21.16709 -20.77028 -19.52213 -18.14886 -18.09395 -17.81768 -17.29387 -17.15096 -16.82403 -16.61285 -16.31737 -16.06723 -16.01778 -15.44764 -15.21096 -14.87587 -14.82601 -14.54921 -14.33357 -13.90721 -13.64709 -13.54710 -13.41907 -13.28101 -13.16471 -12.93835 -12.84672 -12.78117 -12.68074 -12.58586 -12.31094 -12.15570 -12.05286 -12.05055 -11.97737 -11.44550 -11.10124 -10.82586 -10.70471 -10.58899 -10.34106 -10.16339 -10.13012 -9.82264 -8.07401 -6.20601 0.44290 1.37151 1.41352 1.44993 1.51973 1.62349 2.18288 2.26006 2.38784 2.78606 3.04369 3.55153 3.66465 3.69197 3.89445 3.91500 3.91867 4.04013 4.07382 4.22245 4.45475 4.49213 4.50172 4.52215 4.70277 4.71028 4.76145 4.76180 4.89974 4.92983 4.97562 5.01035 5.03838 5.07140 5.09589 5.18456 5.27145 5.29972 5.32804 5.43056 5.47272 5.56463 5.59226 5.89072 6.03451 6.34722 6.52641 6.54883 6.78743 6.86017 7.10694 7.24727 7.41989 8.87934 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018653 B = 0.001809 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.718930 B =15474.860372 C =16154.503992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.507 3.493 5 O -0.591 6.591 6 N -0.717 5.717 7 C 0.123 3.877 8 C -0.126 4.126 9 C 0.117 3.883 10 N -0.686 5.686 11 C 0.510 3.490 12 O -0.547 6.547 13 C 0.492 3.508 14 O -0.561 6.561 15 N -0.656 5.656 16 C 0.171 3.829 17 C 0.001 3.999 18 C -0.504 4.504 19 H 0.056 0.944 20 C 0.039 3.961 21 N -0.892 5.892 22 Si 0.940 3.060 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.287 1.287 26 C -0.189 4.189 27 C -0.188 4.188 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.418 0.582 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.422 0.578 43 H 0.410 0.590 44 H 0.041 0.959 45 H 0.085 0.915 46 H 0.261 0.739 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.576 4.322 -19.272 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C -0.200 4.200 4 C 0.295 3.705 5 O -0.471 6.471 6 N -0.370 5.370 7 C -0.002 4.002 8 C -0.164 4.164 9 C -0.006 4.006 10 N -0.340 5.340 11 C 0.291 3.709 12 O -0.424 6.424 13 C 0.272 3.728 14 O -0.442 6.442 15 N -0.304 5.304 16 C 0.048 3.952 17 C 0.000 4.000 18 C -0.542 4.542 19 H 0.074 0.926 20 C -0.163 4.163 21 N -0.529 5.529 22 Si 0.767 3.233 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.214 1.214 26 C -0.228 4.228 27 C -0.225 4.225 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.141 0.859 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.259 0.741 43 H 0.246 0.754 44 H 0.059 0.941 45 H 0.103 0.897 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.187 4.137 -18.756 25.118 hybrid contribution 0.005 0.398 1.073 1.144 sum -16.183 4.534 -17.683 24.396 Atomic orbital electron populations 1.21633 0.93214 1.01993 1.02398 1.21371 0.97856 0.98204 0.95659 1.21814 1.02147 0.92788 1.03237 1.21412 0.82119 0.78808 0.88127 1.90701 1.56665 1.50681 1.49025 1.45889 1.07142 1.58405 1.25536 1.21099 0.93396 0.97555 0.88108 1.21829 0.93793 1.02982 0.97770 1.21440 0.77509 1.02095 0.99586 1.45612 1.08015 1.56261 1.24128 1.20166 0.88226 0.79558 0.82995 1.90747 1.70150 1.45255 1.36252 1.20214 0.88595 0.80144 0.83814 1.90653 1.70321 1.48370 1.34855 1.45701 1.09100 1.54638 1.20980 1.20918 0.77244 1.02478 0.94602 1.19273 0.94188 0.92441 0.94109 1.20706 1.39972 0.94184 0.99299 0.92550 1.25481 0.96008 0.96568 0.98245 1.69952 1.45903 1.00739 1.36312 0.85773 0.78848 0.78352 0.80360 1.19187 1.20740 1.21362 1.22928 0.93344 1.05480 1.01017 1.22979 1.05631 0.92653 1.01259 0.93751 0.89647 0.93439 0.85913 0.89585 0.93445 0.90581 0.74453 0.91874 0.92319 0.88651 0.88143 0.90686 0.91493 0.74054 0.75430 0.94089 0.89705 0.92980 0.90040 0.90525 0.89974 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.48 71.98 0.61 -0.99 16 2 C -0.11 -1.02 3.26 -11.54 -0.04 -1.06 16 3 C -0.14 -0.82 9.09 71.98 0.65 -0.17 16 4 C 0.51 8.44 7.15 87.66 0.63 9.07 16 5 O -0.59 -15.94 15.98 -3.03 -0.05 -15.99 16 6 N -0.72 -8.05 5.45 -463.09 -2.52 -10.58 16 7 C 0.12 1.70 5.67 86.38 0.49 2.19 16 8 C -0.13 -1.31 5.44 30.59 0.17 -1.15 16 9 C 0.12 2.19 5.67 86.38 0.49 2.68 16 10 N -0.69 -16.78 5.55 -464.40 -2.58 -19.36 16 11 C 0.51 17.77 7.89 87.27 0.69 18.46 16 12 O -0.55 -21.80 16.49 -3.26 -0.05 -21.85 16 13 C 0.49 19.82 7.88 87.27 0.69 20.50 16 14 O -0.56 -23.56 16.48 -3.23 -0.05 -23.61 16 15 N -0.66 -28.67 5.27 -464.40 -2.45 -31.11 16 16 C 0.17 7.84 4.75 86.38 0.41 8.25 16 17 C 0.00 0.03 2.00 -52.93 -0.11 -0.08 16 18 C -0.50 -25.67 8.27 25.60 0.21 -25.46 16 19 H 0.06 2.89 7.84 -2.91 -0.02 2.87 16 20 C 0.04 2.01 5.13 84.65 0.43 2.44 16 21 N -0.89 -47.62 10.75 21.45 0.23 -47.39 16 22 Si 0.94 42.28 29.55 68.60 2.03 44.30 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 C -0.19 -7.90 9.96 30.62 0.30 -7.59 16 27 C -0.19 -7.43 9.92 30.62 0.30 -7.12 16 28 H 0.04 0.68 8.10 -2.38 -0.02 0.66 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.69 8.10 -2.39 -0.02 0.68 16 31 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.08 0.21 7.56 -2.39 -0.02 0.19 16 35 H 0.42 1.84 7.89 -92.71 -0.73 1.11 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.42 8.73 7.95 -92.71 -0.74 8.00 16 43 H 0.41 18.39 7.41 -92.71 -0.69 17.70 16 44 H 0.04 1.79 8.06 -2.39 -0.02 1.77 16 45 H 0.09 4.44 6.04 -2.39 -0.01 4.42 16 46 H 0.26 13.53 8.32 -92.71 -0.77 12.76 16 47 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 48 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 49 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 50 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -69.44 418.65 -0.70 -70.14 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -1.19 Total: 35.48 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 5.94 Total: 19.97 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -7.32 Total: -108.44 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -0.16 Total: -61.45 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -69.44 -0.70 -70.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327367717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.772 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds