Wall clock time and date at job start Tue Mar 31 2020 22:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99670 * 2 1 4 4 C 1.50701 * 109.47346 * 269.99948 * 3 2 1 5 5 O 1.21290 * 119.99489 * 359.97438 * 4 3 2 6 6 N 1.34766 * 120.00225 * 179.73102 * 4 3 2 7 7 C 1.47027 * 125.64878 * 359.96382 * 6 4 3 8 8 C 1.54318 * 107.27608 * 180.96918 * 7 6 4 9 9 C 1.55157 * 102.86031 * 22.52743 * 8 7 6 10 10 C 1.47430 * 125.64835 * 180.27752 * 6 4 3 11 11 C 1.34772 * 119.99617 * 179.97438 * 2 1 3 12 12 O 1.21350 * 119.99483 * 176.42058 * 11 2 1 13 13 C 1.49447 * 120.00326 * 356.42643 * 11 2 1 14 14 O 1.21349 * 120.00223 * 5.91065 * 13 11 2 15 15 N 1.34779 * 119.99878 * 185.91592 * 13 11 2 16 16 C 1.46496 * 120.00079 * 179.97438 * 15 13 11 17 17 C 1.52997 * 109.47586 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46817 * 300.00102 * 17 16 15 19 19 C 1.52999 * 109.46989 * 60.00069 * 17 16 15 20 20 C 1.50695 * 109.47673 * 180.02562 * 17 16 15 21 21 H 1.08004 * 120.00008 * 359.97438 * 20 17 16 22 22 C 1.37876 * 120.00681 * 180.02562 * 20 17 16 23 23 N 1.31523 * 119.99522 * 359.97438 * 22 20 17 24 24 Si 1.86794 * 120.00459 * 180.02562 * 22 20 17 25 25 H 1.48494 * 109.47590 * 89.99931 * 24 22 20 26 26 H 1.48504 * 109.46816 * 209.99914 * 24 22 20 27 27 H 1.48506 * 109.46979 * 329.99299 * 24 22 20 28 28 H 1.08997 * 109.46843 * 95.97701 * 1 2 3 29 29 H 1.09002 * 109.46931 * 215.97758 * 1 2 3 30 30 H 1.09005 * 109.46843 * 335.97561 * 1 2 3 31 31 H 1.09005 * 109.46860 * 150.00424 * 3 2 1 32 32 H 1.08990 * 109.47508 * 30.00244 * 3 2 1 33 33 H 1.08996 * 109.88412 * 300.51731 * 7 6 4 34 34 H 1.09000 * 109.88057 * 61.68366 * 7 6 4 35 35 H 1.08998 * 110.92591 * 264.11620 * 8 7 6 36 36 H 1.09002 * 110.58907 * 140.78227 * 8 7 6 37 37 H 1.09004 * 111.00119 * 206.22590 * 9 8 7 38 38 H 1.09009 * 111.00517 * 82.38218 * 9 8 7 39 39 H 1.09004 * 110.36303 * 274.66596 * 10 6 4 40 40 H 1.08994 * 110.36657 * 36.88057 * 10 6 4 41 41 H 0.97001 * 120.00526 * 359.97438 * 15 13 11 42 42 H 1.09002 * 109.47166 * 299.99828 * 16 15 13 43 43 H 1.09006 * 109.47201 * 60.00017 * 16 15 13 44 44 H 1.08999 * 109.47281 * 59.99789 * 18 17 16 45 45 H 1.09009 * 109.46804 * 179.97438 * 18 17 16 46 46 H 1.08998 * 109.47163 * 299.99716 * 18 17 16 47 47 H 1.08995 * 109.47277 * 59.99995 * 19 17 16 48 48 H 1.09006 * 109.47129 * 180.02562 * 19 17 16 49 49 H 1.08999 * 109.46964 * 300.00121 * 19 17 16 50 50 H 0.96997 * 120.00085 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 8 2.0550 1.0210 -2.3427 6 7 3.1063 2.8541 -1.6671 7 6 3.6306 3.7763 -0.6490 8 6 4.2804 4.9608 -1.3948 9 6 3.5805 4.9231 -2.7790 10 6 3.4136 3.3993 -3.0019 11 6 2.1389 -1.1672 0.0005 12 8 3.3506 -1.1682 -0.0651 13 6 1.3938 -2.4602 0.0818 14 8 0.1811 -2.4654 0.0391 15 7 2.0688 -3.6205 0.2025 16 6 1.3385 -4.8878 0.2828 17 6 2.3336 -6.0426 0.4137 18 6 3.2559 -6.0618 -0.8069 19 6 3.1692 -5.8544 1.6815 20 6 1.5824 -7.3464 0.4956 21 1 0.5030 -7.3510 0.4584 22 6 2.2728 -8.5334 0.6190 23 7 3.5872 -8.5279 0.6648 24 14 1.3416 -10.1496 0.7198 25 1 1.1449 -10.6937 -0.6478 26 1 2.1200 -11.1195 1.5313 27 1 0.0196 -9.9202 1.3563 28 1 -0.3633 -0.1070 -1.0221 29 1 -0.3633 -0.8317 0.6037 30 1 -0.3633 0.9387 0.4184 31 1 3.1500 1.1384 0.5138 32 1 1.6085 2.0283 0.5138 33 1 2.8166 4.1342 -0.0187 34 1 4.3786 3.2692 -0.0396 35 1 5.3548 4.8113 -1.5016 36 1 4.0696 5.8990 -0.8815 37 1 4.2139 5.3636 -3.5491 38 1 2.6115 5.4209 -2.7406 39 1 4.3391 2.9682 -3.3839 40 1 2.5919 3.2026 -3.6904 41 1 3.0382 -3.6164 0.2364 42 1 0.6811 -4.8740 1.1521 43 1 0.7435 -5.0222 -0.6207 44 1 3.7994 -5.1189 -0.8666 45 1 3.9652 -6.8843 -0.7134 46 1 2.6606 -6.1959 -1.7101 47 1 2.5121 -5.8407 2.5510 48 1 3.8785 -6.6769 1.7745 49 1 3.7126 -4.9115 1.6218 50 1 4.0730 -9.3629 0.7513 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328130325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:57 Heat of formation + Delta-G solvation = -87.568644 kcal Electronic energy + Delta-G solvation = -30146.860773 eV Core-core repulsion = 25981.986821 eV Total energy + Delta-G solvation = -4164.873952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.85774 -40.01211 -38.40202 -37.53208 -36.57975 -35.49312 -33.26264 -32.25279 -30.86538 -29.87497 -28.76424 -26.97553 -25.86083 -25.69387 -25.16388 -24.07078 -22.55797 -21.60776 -20.15152 -19.39990 -18.77868 -17.70285 -17.68361 -17.11098 -16.60319 -16.04127 -15.90538 -15.53240 -15.10345 -14.87727 -14.67313 -14.30901 -14.10523 -13.87181 -13.77004 -13.57078 -13.14082 -12.98942 -12.90212 -12.77774 -12.66928 -12.47259 -12.20033 -12.07417 -11.85717 -11.69919 -11.37246 -11.25915 -11.21296 -11.07202 -10.86032 -10.68113 -10.37574 -10.31681 -10.17819 -9.62521 -9.43079 -9.09057 -9.00286 -8.88277 -8.77114 -8.52904 -8.34408 -6.00485 -4.11129 1.65456 2.30875 2.37601 2.77610 3.29723 3.36693 3.40014 3.48358 3.76430 3.97347 4.07143 4.37799 4.40587 4.47294 4.64256 4.75910 4.82726 4.88694 5.01100 5.08662 5.12336 5.23521 5.26034 5.35517 5.41370 5.47276 5.65413 5.69228 5.88194 5.96633 6.14299 6.18386 6.26729 6.50063 6.69830 6.86024 6.88130 6.96332 6.98308 7.03482 7.13748 7.35761 7.57781 7.61079 7.71239 7.89415 7.99556 8.02519 8.15124 8.35476 8.44497 8.89031 9.54520 11.00927 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.002076 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.735090 B =13486.221400 C =13837.173789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.577 5.577 3 C 0.101 3.899 4 C 0.513 3.487 5 O -0.522 6.522 6 N -0.623 5.623 7 C 0.096 3.904 8 C -0.132 4.132 9 C -0.134 4.134 10 C 0.104 3.896 11 C 0.514 3.486 12 O -0.520 6.520 13 C 0.500 3.500 14 O -0.527 6.527 15 N -0.679 5.679 16 C 0.128 3.872 17 C 0.055 3.945 18 C -0.134 4.134 19 C -0.133 4.133 20 C -0.506 4.506 21 H 0.058 0.942 22 C 0.066 3.934 23 N -0.884 5.884 24 Si 0.895 3.105 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.410 0.590 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.008 0.992 45 H 0.087 0.913 46 H 0.028 0.972 47 H 0.027 0.973 48 H 0.087 0.913 49 H 0.008 0.992 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 28.590 -0.719 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.311 5.311 3 C -0.026 4.026 4 C 0.300 3.700 5 O -0.396 6.396 6 N -0.360 5.360 7 C -0.027 4.027 8 C -0.170 4.170 9 C -0.172 4.172 10 C -0.018 4.018 11 C 0.297 3.703 12 O -0.395 6.395 13 C 0.280 3.720 14 O -0.406 6.406 15 N -0.331 5.331 16 C 0.007 3.993 17 C 0.055 3.945 18 C -0.192 4.192 19 C -0.191 4.191 20 C -0.544 4.544 21 H 0.077 0.923 22 C -0.136 4.136 23 N -0.523 5.523 24 Si 0.723 3.277 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.248 0.752 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.027 0.973 45 H 0.105 0.895 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.106 0.894 49 H 0.027 0.973 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.245 27.921 -1.231 27.949 hybrid contribution 0.040 -0.677 -0.044 0.679 sum 0.285 27.244 -1.275 27.275 Atomic orbital electron populations 1.22474 0.76831 1.03889 1.04081 1.47260 1.08372 1.03811 1.71622 1.21366 1.00419 0.86859 0.93951 1.20951 0.77275 0.79410 0.92398 1.90757 1.50198 1.52489 1.46205 1.48541 1.57366 1.22069 1.08065 1.22109 0.98444 0.90711 0.91474 1.22637 1.00512 0.97836 0.95980 1.22796 1.01545 0.95325 0.97516 1.22229 1.01491 0.92821 0.85288 1.20500 0.87484 0.85389 0.76908 1.90734 1.13711 1.87194 1.47843 1.19776 0.87652 0.85114 0.79418 1.90616 1.13250 1.86518 1.50183 1.46219 1.11935 1.05994 1.68903 1.21947 0.95667 0.80720 1.01000 1.18388 0.91887 0.91225 0.93048 1.21859 1.00328 0.99574 0.97397 1.21850 1.00370 0.99268 0.97576 1.20942 0.92909 0.89996 1.50578 0.92343 1.24894 0.94894 0.98980 0.94823 1.69814 1.05791 1.26612 1.50057 0.86549 0.79849 0.83317 0.78004 1.20724 1.21290 1.19911 0.91931 0.86815 0.92062 0.86704 0.87091 0.91124 0.90948 0.90265 0.89804 0.89667 0.90530 0.91367 0.90351 0.75242 0.91934 0.91967 0.97260 0.89455 0.95324 0.95336 0.89447 0.97315 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 9.60 59.85 0.57 1.41 16 2 N -0.58 -7.98 2.36 -183.46 -0.43 -8.42 16 3 C 0.10 1.06 5.09 -5.19 -0.03 1.03 16 4 C 0.51 6.52 7.92 -10.99 -0.09 6.43 16 5 O -0.52 -9.13 16.68 5.55 0.09 -9.04 16 6 N -0.62 -5.79 3.33 -170.52 -0.57 -6.36 16 7 C 0.10 0.51 6.48 -3.06 -0.02 0.49 16 8 C -0.13 -0.49 6.95 -24.90 -0.17 -0.66 16 9 C -0.13 -0.61 7.08 -24.58 -0.17 -0.79 16 10 C 0.10 0.85 6.91 -2.53 -0.02 0.83 16 11 C 0.51 8.80 7.73 -11.59 -0.09 8.71 16 12 O -0.52 -9.75 16.10 5.50 0.09 -9.66 16 13 C 0.50 9.31 7.77 -11.59 -0.09 9.22 16 14 O -0.53 -10.18 13.14 5.50 0.07 -10.11 16 15 N -0.68 -13.17 4.95 -60.73 -0.30 -13.48 16 16 C 0.13 2.74 4.50 -4.05 -0.02 2.73 16 17 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 18 C -0.13 -3.16 8.08 37.16 0.30 -2.86 16 19 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 20 C -0.51 -13.25 8.01 -34.44 -0.28 -13.53 16 21 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 22 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 23 N -0.88 -23.84 9.35 55.43 0.52 -23.32 16 24 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.11 1.54 5.35 -51.93 -0.28 1.27 16 30 H 0.06 0.52 7.83 -51.93 -0.41 0.11 16 31 H 0.12 1.15 7.47 -51.93 -0.39 0.76 16 32 H 0.11 0.71 7.85 -51.93 -0.41 0.30 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.73 8.03 -51.93 -0.42 0.32 16 41 H 0.41 7.89 5.65 -40.82 -0.23 7.66 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.01 0.18 6.86 -51.93 -0.36 -0.17 16 45 H 0.09 2.25 6.07 -51.92 -0.32 1.94 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 49 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 50 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -32.73 398.45 -7.60 -40.33 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.09 Total: 5.14 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 0.03 Total: 13.10 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.78 Total: -51.57 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: 0.25 Total: -28.80 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.73 -7.60 -40.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328130325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.235 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds