Wall clock time and date at job start Tue Mar 31 2020 22:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99670 * 2 1 4 4 C 1.50701 * 109.47346 * 269.99948 * 3 2 1 5 5 O 1.21290 * 119.99489 * 359.97438 * 4 3 2 6 6 N 1.34766 * 120.00225 * 179.73102 * 4 3 2 7 7 C 1.47027 * 125.64878 * 359.96382 * 6 4 3 8 8 C 1.54318 * 107.27608 * 180.96918 * 7 6 4 9 9 C 1.55157 * 102.86031 * 22.52743 * 8 7 6 10 10 C 1.47430 * 125.64835 * 180.27752 * 6 4 3 11 11 C 1.34772 * 119.99617 * 179.97438 * 2 1 3 12 12 O 1.21350 * 119.99483 * 176.42058 * 11 2 1 13 13 C 1.49447 * 120.00326 * 356.42643 * 11 2 1 14 14 O 1.21349 * 120.00223 * 5.91065 * 13 11 2 15 15 N 1.34779 * 119.99878 * 185.91592 * 13 11 2 16 16 C 1.46496 * 120.00079 * 179.97438 * 15 13 11 17 17 C 1.52997 * 109.47586 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46817 * 300.00102 * 17 16 15 19 19 C 1.52999 * 109.46989 * 60.00069 * 17 16 15 20 20 C 1.50695 * 109.47673 * 180.02562 * 17 16 15 21 21 H 1.08004 * 120.00008 * 359.97438 * 20 17 16 22 22 C 1.37876 * 120.00681 * 180.02562 * 20 17 16 23 23 N 1.31523 * 119.99522 * 359.97438 * 22 20 17 24 24 Si 1.86794 * 120.00459 * 180.02562 * 22 20 17 25 25 H 1.48494 * 109.47590 * 89.99931 * 24 22 20 26 26 H 1.48504 * 109.46816 * 209.99914 * 24 22 20 27 27 H 1.48506 * 109.46979 * 329.99299 * 24 22 20 28 28 H 1.08997 * 109.46843 * 95.97701 * 1 2 3 29 29 H 1.09002 * 109.46931 * 215.97758 * 1 2 3 30 30 H 1.09005 * 109.46843 * 335.97561 * 1 2 3 31 31 H 1.09005 * 109.46860 * 150.00424 * 3 2 1 32 32 H 1.08990 * 109.47508 * 30.00244 * 3 2 1 33 33 H 1.08996 * 109.88412 * 300.51731 * 7 6 4 34 34 H 1.09000 * 109.88057 * 61.68366 * 7 6 4 35 35 H 1.08998 * 110.92591 * 264.11620 * 8 7 6 36 36 H 1.09002 * 110.58907 * 140.78227 * 8 7 6 37 37 H 1.09004 * 111.00119 * 206.22590 * 9 8 7 38 38 H 1.09009 * 111.00517 * 82.38218 * 9 8 7 39 39 H 1.09004 * 110.36303 * 274.66596 * 10 6 4 40 40 H 1.08994 * 110.36657 * 36.88057 * 10 6 4 41 41 H 0.97001 * 120.00526 * 359.97438 * 15 13 11 42 42 H 1.09002 * 109.47166 * 299.99828 * 16 15 13 43 43 H 1.09006 * 109.47201 * 60.00017 * 16 15 13 44 44 H 1.08999 * 109.47281 * 59.99789 * 18 17 16 45 45 H 1.09009 * 109.46804 * 179.97438 * 18 17 16 46 46 H 1.08998 * 109.47163 * 299.99716 * 18 17 16 47 47 H 1.08995 * 109.47277 * 59.99995 * 19 17 16 48 48 H 1.09006 * 109.47129 * 180.02562 * 19 17 16 49 49 H 1.08999 * 109.46964 * 300.00121 * 19 17 16 50 50 H 0.96997 * 120.00085 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 8 2.0550 1.0210 -2.3427 6 7 3.1063 2.8541 -1.6671 7 6 3.6306 3.7763 -0.6490 8 6 4.2804 4.9608 -1.3948 9 6 3.5805 4.9231 -2.7790 10 6 3.4136 3.3993 -3.0019 11 6 2.1389 -1.1672 0.0005 12 8 3.3506 -1.1682 -0.0651 13 6 1.3938 -2.4602 0.0818 14 8 0.1811 -2.4654 0.0391 15 7 2.0688 -3.6205 0.2025 16 6 1.3385 -4.8878 0.2828 17 6 2.3336 -6.0426 0.4137 18 6 3.2559 -6.0618 -0.8069 19 6 3.1692 -5.8544 1.6815 20 6 1.5824 -7.3464 0.4956 21 1 0.5030 -7.3510 0.4584 22 6 2.2728 -8.5334 0.6190 23 7 3.5872 -8.5279 0.6648 24 14 1.3416 -10.1496 0.7198 25 1 1.1449 -10.6937 -0.6478 26 1 2.1200 -11.1195 1.5313 27 1 0.0196 -9.9202 1.3563 28 1 -0.3633 -0.1070 -1.0221 29 1 -0.3633 -0.8317 0.6037 30 1 -0.3633 0.9387 0.4184 31 1 3.1500 1.1384 0.5138 32 1 1.6085 2.0283 0.5138 33 1 2.8166 4.1342 -0.0187 34 1 4.3786 3.2692 -0.0396 35 1 5.3548 4.8113 -1.5016 36 1 4.0696 5.8990 -0.8815 37 1 4.2139 5.3636 -3.5491 38 1 2.6115 5.4209 -2.7406 39 1 4.3391 2.9682 -3.3839 40 1 2.5919 3.2026 -3.6904 41 1 3.0382 -3.6164 0.2364 42 1 0.6811 -4.8740 1.1521 43 1 0.7435 -5.0222 -0.6207 44 1 3.7994 -5.1189 -0.8666 45 1 3.9652 -6.8843 -0.7134 46 1 2.6606 -6.1959 -1.7101 47 1 2.5121 -5.8407 2.5510 48 1 3.8785 -6.6769 1.7745 49 1 3.7126 -4.9115 1.6218 50 1 4.0730 -9.3629 0.7513 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328130325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:56 Heat of formation + Delta-G solvation = -109.327730 kcal Electronic energy + Delta-G solvation = -30147.804318 eV Core-core repulsion = 25981.986821 eV Total energy + Delta-G solvation = -4165.817497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.07001 -41.00513 -39.71835 -38.40560 -38.27578 -36.73822 -34.98294 -32.94156 -32.75642 -30.51886 -29.49626 -28.27312 -27.60556 -27.48142 -26.94808 -24.99727 -23.70815 -22.07749 -21.38995 -20.69772 -20.23705 -19.03853 -18.54552 -18.20522 -17.79574 -17.38660 -17.16529 -16.87392 -16.60169 -16.41412 -15.85034 -15.54356 -15.22653 -15.02246 -14.76710 -14.50751 -14.35385 -14.25111 -14.13784 -14.04477 -13.78627 -13.57041 -13.28692 -13.22116 -13.12876 -13.01031 -12.70960 -12.58892 -12.41429 -12.28589 -12.19474 -12.15052 -12.12240 -11.58655 -11.52224 -11.34666 -11.28170 -10.75058 -10.47445 -10.41596 -10.18928 -9.89798 -9.73442 -8.01652 -6.18153 0.27494 1.16984 1.44385 1.46610 1.46992 1.55352 1.89377 2.13194 2.42247 2.53203 3.22024 3.30535 3.39104 3.68415 3.84053 3.94980 4.09358 4.20642 4.23611 4.32161 4.33284 4.46271 4.48288 4.64992 4.65911 4.66770 4.84837 4.87556 4.94142 4.97321 4.99624 5.02201 5.04759 5.10695 5.13996 5.15720 5.25975 5.30790 5.38426 5.48561 5.63064 5.67011 5.76056 6.09103 6.16884 6.20436 6.38617 6.40317 6.61204 6.84862 6.92611 7.02698 7.49555 8.97774 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.002076 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.735090 B =13486.221400 C =13837.173789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.569 5.569 3 C 0.099 3.901 4 C 0.503 3.497 5 O -0.585 6.585 6 N -0.620 5.620 7 C 0.085 3.915 8 C -0.125 4.125 9 C -0.123 4.123 10 C 0.093 3.907 11 C 0.512 3.488 12 O -0.543 6.543 13 C 0.499 3.501 14 O -0.536 6.536 15 N -0.681 5.681 16 C 0.144 3.856 17 C 0.049 3.951 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.524 4.524 21 H 0.052 0.948 22 C 0.024 3.976 23 N -0.902 5.902 24 Si 0.950 3.050 25 H -0.281 1.281 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.163 0.837 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.411 0.589 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.026 0.974 45 H 0.065 0.935 46 H 0.020 0.980 47 H 0.026 0.974 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.425 31.487 0.477 31.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.301 5.301 3 C -0.026 4.026 4 C 0.291 3.709 5 O -0.465 6.465 6 N -0.355 5.355 7 C -0.037 4.037 8 C -0.163 4.163 9 C -0.161 4.161 10 C -0.030 4.030 11 C 0.294 3.706 12 O -0.420 6.420 13 C 0.279 3.721 14 O -0.415 6.415 15 N -0.333 5.333 16 C 0.021 3.979 17 C 0.049 3.951 18 C -0.182 4.182 19 C -0.180 4.180 20 C -0.562 4.562 21 H 0.070 0.930 22 C -0.176 4.176 23 N -0.540 5.540 24 Si 0.777 3.223 25 H -0.207 1.207 26 H -0.210 1.210 27 H -0.196 1.196 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.141 0.859 32 H 0.180 0.820 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.249 0.751 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.083 0.917 46 H 0.040 0.960 47 H 0.046 0.954 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.101 30.906 -0.014 30.907 hybrid contribution 0.085 -1.444 -0.449 1.515 sum 0.186 29.463 -0.464 29.467 Atomic orbital electron populations 1.22494 0.75827 1.05884 1.02970 1.47364 1.09177 1.04025 1.69493 1.21741 1.01522 0.86196 0.93125 1.21345 0.77101 0.79789 0.92618 1.90730 1.53191 1.54653 1.47936 1.48678 1.55665 1.21467 1.09642 1.22483 0.99632 0.90536 0.91015 1.22673 1.00368 0.98176 0.95072 1.22768 1.02413 0.92165 0.98734 1.22378 1.00192 0.95616 0.84774 1.20168 0.87146 0.85737 0.77517 1.90718 1.14328 1.87468 1.49525 1.20148 0.87647 0.85601 0.78654 1.90624 1.13730 1.86907 1.50224 1.46080 1.11828 1.05740 1.69653 1.21564 0.94922 0.81042 1.00329 1.18395 0.92231 0.91285 0.93223 1.21718 0.99807 0.99546 0.97134 1.21687 0.99788 0.99336 0.97196 1.21220 0.92886 0.91410 1.50718 0.92953 1.25530 0.95652 1.01636 0.94740 1.69933 1.06647 1.27100 1.50334 0.85678 0.78813 0.80019 0.77801 1.20695 1.21008 1.19629 0.93756 0.88266 0.87350 0.85867 0.81999 0.88528 0.90264 0.90048 0.87335 0.88235 0.89914 0.92237 0.92448 0.75107 0.92163 0.93056 0.95522 0.91652 0.96032 0.95437 0.91780 0.95269 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.57 9.60 127.77 1.23 2.79 16 2 N -0.57 -14.88 2.36 -852.72 -2.01 -16.90 16 3 C 0.10 1.82 5.09 85.63 0.44 2.26 16 4 C 0.50 12.31 7.92 87.66 0.69 13.01 16 5 O -0.59 -20.96 16.68 -3.06 -0.05 -21.01 16 6 N -0.62 -10.57 3.33 -811.80 -2.70 -13.27 16 7 C 0.08 0.61 6.48 86.73 0.56 1.18 16 8 C -0.13 -0.49 6.95 31.78 0.22 -0.27 16 9 C -0.12 -0.83 7.08 31.98 0.23 -0.60 16 10 C 0.09 1.47 6.91 86.85 0.60 2.07 16 11 C 0.51 17.28 7.73 87.27 0.67 17.96 16 12 O -0.54 -20.19 16.10 -3.25 -0.05 -20.24 16 13 C 0.50 18.53 7.77 87.27 0.68 19.21 16 14 O -0.54 -20.73 13.14 -3.24 -0.04 -20.77 16 15 N -0.68 -26.44 4.95 -464.41 -2.30 -28.74 16 16 C 0.14 6.20 4.50 86.38 0.39 6.59 16 17 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 18 C -0.12 -5.93 8.08 71.98 0.58 -5.35 16 19 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 20 C -0.52 -27.71 8.01 25.60 0.21 -27.51 16 21 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 22 C 0.02 1.28 5.15 84.65 0.44 1.71 16 23 N -0.90 -49.09 9.35 21.45 0.20 -48.89 16 24 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.10 2.58 5.35 -2.47 -0.01 2.57 16 30 H 0.11 1.42 7.83 -2.38 -0.02 1.40 16 31 H 0.12 2.12 7.47 -2.38 -0.02 2.11 16 32 H 0.16 1.26 7.85 -2.39 -0.02 1.24 16 33 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 35 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.13 8.03 -2.39 -0.02 1.11 16 41 H 0.41 15.75 5.65 -92.71 -0.52 15.22 16 42 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.03 1.13 6.86 -2.39 -0.02 1.12 16 45 H 0.06 3.42 6.07 -2.38 -0.01 3.41 16 46 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.06 3.28 6.07 -2.38 -0.01 3.26 16 49 H 0.03 1.18 6.86 -2.39 -0.02 1.17 16 50 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -73.47 398.45 2.97 -70.50 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.42 Total: 24.14 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: 7.48 Total: 30.30 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -6.81 Total: -107.80 kcal Atomic # 8 Polarization: -61.88 SS G_CDS: -0.15 Total: -62.02 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.47 2.97 -70.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328130325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.829 kcal (2) G-P(sol) polarization free energy of solvation -73.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds