Wall clock time and date at job start Wed Apr 1 2020 00:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47258 * 2 1 4 4 N 1.46901 * 109.46977 * 179.97438 * 3 2 1 5 5 C 1.48537 * 110.99773 * 287.39109 * 4 3 2 6 6 C 1.54938 * 103.22543 * 200.28038 * 5 4 3 7 7 C 1.54597 * 102.92319 * 37.41417 * 6 5 4 8 8 H 1.08999 * 110.39026 * 96.99552 * 7 6 5 9 9 N 1.46498 * 110.31051 * 219.12730 * 7 6 5 10 10 C 1.34776 * 119.99901 * 270.71262 * 9 7 6 11 11 O 1.21354 * 120.00083 * 0.02562 * 10 9 7 12 12 C 1.49449 * 120.00301 * 179.97438 * 10 9 7 13 13 O 1.21350 * 119.99724 * 0.02562 * 12 10 9 14 14 N 1.34771 * 120.00335 * 180.02562 * 12 10 9 15 15 C 1.47026 * 125.64720 * 359.68994 * 14 12 10 16 16 C 1.54341 * 107.26550 * 178.85222 * 15 14 12 17 17 C 1.55153 * 103.01892 * 338.14172 * 16 15 14 18 18 O 1.42903 * 111.04013 * 277.21773 * 17 16 15 19 19 C 1.50700 * 111.00284 * 153.38172 * 17 16 15 20 20 H 1.07998 * 119.99822 * 4.48468 * 19 17 16 21 21 C 1.37876 * 120.00209 * 184.49077 * 19 17 16 22 22 N 1.31522 * 120.00000 * 5.27681 * 21 19 17 23 23 Si 1.86797 * 120.00106 * 185.27410 * 21 19 17 24 24 H 1.48500 * 109.47221 * 85.00011 * 23 21 19 25 25 H 1.48501 * 109.47059 * 204.99390 * 23 21 19 26 26 H 1.48492 * 109.47200 * 324.99224 * 23 21 19 27 27 C 1.47425 * 125.64988 * 180.02562 * 14 12 10 28 28 C 1.47899 * 110.99956 * 169.99551 * 4 3 2 29 29 H 1.08999 * 109.47495 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47427 * 300.00850 * 1 2 3 31 31 H 1.09008 * 109.46573 * 60.00422 * 1 2 3 32 32 H 1.08996 * 109.46961 * 239.99330 * 2 1 3 33 33 H 1.09008 * 109.46573 * 119.99578 * 2 1 3 34 34 H 1.08993 * 109.47595 * 59.99253 * 3 2 1 35 35 H 1.09003 * 109.46553 * 299.99164 * 3 2 1 36 36 H 1.08995 * 110.66499 * 318.71718 * 5 4 3 37 37 H 1.08999 * 110.66687 * 81.67947 * 5 4 3 38 38 H 1.09000 * 110.72547 * 279.05768 * 6 5 4 39 39 H 1.09003 * 110.72230 * 155.77037 * 6 5 4 40 40 H 0.96993 * 119.99979 * 90.71394 * 9 7 6 41 41 H 1.09002 * 109.88423 * 298.39725 * 15 14 12 42 42 H 1.09003 * 109.88147 * 59.56503 * 15 14 12 43 43 H 1.08999 * 110.84381 * 219.67718 * 16 15 14 44 44 H 1.08997 * 110.51208 * 96.45071 * 16 15 14 45 45 H 0.96699 * 113.99976 * 166.77703 * 18 17 16 46 46 H 0.96997 * 119.99784 * 180.02562 * 22 21 19 47 47 H 1.08996 * 110.36794 * 322.93243 * 27 14 12 48 48 H 1.09004 * 110.36802 * 85.25430 * 27 14 12 49 49 H 1.09001 * 109.91490 * 26.48907 * 28 4 3 50 50 H 1.09003 * 110.08419 * 265.28970 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0407 1.0281 1.3242 6 6 5.4886 1.5796 1.3130 7 6 5.3381 2.9312 0.5779 8 1 5.2537 3.7468 1.2961 9 7 6.4792 3.1553 -0.3131 10 6 7.5810 3.7802 0.1472 11 8 7.6281 4.1569 1.2998 12 6 8.7454 4.0083 -0.7615 13 8 8.6985 3.6312 -1.9140 14 7 9.8474 4.6328 -0.3011 15 6 10.0347 5.1446 1.0644 16 6 11.4525 5.7505 1.1360 17 6 12.1922 5.0480 -0.0331 18 8 12.6704 3.7607 0.3621 19 6 13.3191 5.9040 -0.5511 20 1 13.5601 6.8349 -0.0595 21 6 14.0424 5.4988 -1.6528 22 7 13.6844 4.4196 -2.3139 23 14 15.5307 6.4825 -2.2065 24 1 16.7253 6.0468 -1.4395 25 1 15.7630 6.2553 -3.6555 26 1 15.2869 7.9272 -1.9648 27 6 11.0619 4.9220 -1.0852 28 6 4.0392 2.8021 -0.2392 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8898 35 1 1.6768 1.9562 -0.8901 36 1 3.4628 1.4809 2.1298 37 1 4.0407 -0.0580 1.4160 38 1 6.1512 0.9124 0.7618 39 1 5.8512 1.7317 2.3297 40 1 6.4417 2.8539 -1.2342 41 1 9.2905 5.9118 1.2782 42 1 9.9457 4.3287 1.7816 43 1 11.9268 5.5159 2.0889 44 1 11.4158 6.8281 0.9771 45 1 12.9565 3.2041 -0.3750 46 1 14.1934 4.1343 -3.0887 47 1 11.2733 4.1034 -1.7729 48 1 10.9465 5.8579 -1.6321 49 1 3.3158 3.5467 0.0932 50 1 4.2523 2.9392 -1.2994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328583146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:56 Heat of formation + Delta-G solvation = -111.154207 kcal Electronic energy + Delta-G solvation = -30056.327986 eV Core-core repulsion = 25890.431286 eV Total energy + Delta-G solvation = -4165.896699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.55494 -39.44577 -38.22167 -37.17490 -35.51120 -34.30431 -33.41072 -32.26150 -30.58881 -30.22587 -28.89438 -27.89086 -26.12782 -25.46381 -23.78251 -22.39627 -22.05186 -21.02266 -20.77162 -19.83534 -19.47883 -17.37465 -17.12684 -16.87999 -16.30633 -15.88724 -15.66907 -15.52034 -15.14269 -14.94720 -14.51588 -14.28274 -14.20116 -13.88842 -13.61574 -13.26522 -13.06187 -12.96744 -12.84441 -12.67999 -12.31344 -12.27010 -12.14272 -11.86789 -11.67066 -11.59183 -11.50114 -11.34894 -11.14578 -11.04656 -11.02741 -10.95914 -10.81574 -10.58376 -10.45277 -10.21810 -9.40479 -9.25782 -9.13398 -8.81394 -8.69934 -8.39259 -7.92022 -6.28907 -4.37633 1.78900 2.62044 3.21642 3.28735 3.30655 3.53438 3.60061 3.88900 4.18074 4.26841 4.37919 4.61618 4.63830 4.72038 4.86079 4.91023 4.96367 4.98136 5.03674 5.11005 5.24308 5.32927 5.35577 5.47229 5.49143 5.56279 5.64383 5.68409 5.77265 5.78550 5.82381 5.87143 5.90621 6.06085 6.23418 6.35735 6.47964 6.50898 6.63716 6.72225 6.79393 6.84632 7.15159 7.23584 7.31024 7.72743 7.87763 8.02293 8.05697 8.44713 8.65818 9.26810 9.34968 10.78465 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032462 B = 0.002016 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.342458 B =13884.239106 C =14226.099611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.045 3.955 4 N -0.516 5.516 5 C 0.036 3.964 6 C -0.136 4.136 7 C 0.136 3.864 8 H 0.099 0.901 9 N -0.699 5.699 10 C 0.512 3.488 11 O -0.517 6.517 12 C 0.507 3.493 13 O -0.537 6.537 14 N -0.575 5.575 15 C 0.112 3.888 16 C -0.122 4.122 17 C 0.248 3.752 18 O -0.579 6.579 19 C -0.536 4.536 20 H 0.068 0.932 21 C 0.072 3.928 22 N -0.892 5.892 23 Si 0.904 3.096 24 H -0.277 1.277 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.092 3.908 28 C 0.029 3.971 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.414 0.586 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.378 0.622 46 H 0.270 0.730 47 H 0.091 0.909 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.361 -5.549 5.321 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.083 4.083 4 N -0.241 5.241 5 C -0.092 4.092 6 C -0.175 4.175 7 C 0.031 3.969 8 H 0.117 0.883 9 N -0.353 5.353 10 C 0.293 3.707 11 O -0.392 6.392 12 C 0.289 3.711 13 O -0.416 6.416 14 N -0.307 5.307 15 C -0.011 4.011 16 C -0.160 4.160 17 C 0.208 3.792 18 O -0.387 6.387 19 C -0.575 4.575 20 H 0.086 0.914 21 C -0.131 4.131 22 N -0.530 5.530 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.029 4.029 28 C -0.099 4.099 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.251 0.749 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.227 0.773 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.348 -5.723 5.546 23.727 hybrid contribution 0.547 0.697 -0.763 1.169 sum -21.802 -5.026 4.783 22.879 Atomic orbital electron populations 1.21745 0.95644 1.01840 1.01742 1.21473 0.95274 0.96134 1.02817 1.22358 0.87320 0.97635 1.00981 1.64769 1.08003 1.22077 1.29215 1.23265 0.94693 1.01364 0.89855 1.22972 0.96780 0.96205 1.01537 1.21840 0.84598 0.98511 0.91998 0.88337 1.45834 1.14729 1.58898 1.15882 1.20459 0.84046 0.78238 0.87931 1.90721 1.81109 1.49344 1.18061 1.19558 0.83409 0.80692 0.87426 1.90732 1.81360 1.51468 1.18032 1.48701 1.14971 1.52825 1.14249 1.22147 0.97748 0.98400 0.82819 1.22723 0.92906 0.99711 1.00648 1.19655 0.89404 0.82349 0.87805 1.86160 1.85495 1.28542 1.38461 1.21433 1.15812 1.07073 1.13142 0.91428 1.25073 0.97492 0.95122 0.95441 1.69751 1.39584 1.24171 1.19534 0.86411 0.82558 0.80262 0.77614 1.20294 1.21110 1.19767 1.23543 0.81364 1.01685 0.96284 1.23118 0.94978 0.90348 1.01452 0.92479 0.92907 0.92654 0.91034 0.92033 0.94506 0.90729 0.93431 0.89601 0.89828 0.90110 0.74922 0.91784 0.91191 0.90513 0.90393 0.77307 0.92016 0.89031 0.91364 0.92473 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.75 6.02 -26.73 -0.16 -0.92 16 3 C 0.05 0.31 4.71 -3.82 -0.02 0.30 16 4 N -0.52 -4.37 5.24 -230.45 -1.21 -5.58 16 5 C 0.04 0.29 5.91 -1.90 -0.01 0.28 16 6 C -0.14 -1.33 6.78 -24.87 -0.17 -1.50 16 7 C 0.14 1.42 3.34 -66.57 -0.22 1.20 16 8 H 0.10 1.10 7.56 -51.93 -0.39 0.70 16 9 N -0.70 -9.04 5.05 -52.92 -0.27 -9.31 16 10 C 0.51 8.52 7.86 -11.59 -0.09 8.42 16 11 O -0.52 -9.19 13.77 5.49 0.08 -9.11 16 12 C 0.51 10.12 7.91 -11.59 -0.09 10.03 16 13 O -0.54 -11.70 16.73 5.50 0.09 -11.61 16 14 N -0.58 -12.13 3.33 -171.00 -0.57 -12.70 16 15 C 0.11 2.14 5.49 -3.05 -0.02 2.13 16 16 C -0.12 -2.48 6.13 -24.89 -0.15 -2.63 16 17 C 0.25 5.98 0.86 -89.61 -0.08 5.90 16 18 O -0.58 -14.63 13.14 -35.23 -0.46 -15.09 16 19 C -0.54 -13.85 8.25 -34.44 -0.28 -14.14 16 20 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 21 C 0.07 1.87 5.32 -17.82 -0.09 1.77 16 22 N -0.89 -23.50 10.80 55.43 0.60 -22.90 16 23 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 C 0.09 2.17 5.35 -2.52 -0.01 2.16 16 28 C 0.03 0.25 6.43 -2.75 -0.02 0.23 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.28 8.14 -51.92 -0.42 -0.15 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.39 7.36 -51.92 -0.38 0.01 16 34 H 0.04 0.25 7.83 -51.93 -0.41 -0.16 16 35 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.05 0.35 7.81 -51.93 -0.41 -0.06 16 37 H 0.09 0.65 7.80 -51.93 -0.40 0.24 16 38 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.41 5.10 7.82 -40.82 -0.32 4.78 16 41 H 0.06 1.13 7.71 -51.93 -0.40 0.73 16 42 H 0.07 1.36 7.57 -51.93 -0.39 0.96 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.08 1.48 8.03 -51.93 -0.42 1.07 16 45 H 0.38 9.66 7.71 45.56 0.35 10.01 16 46 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 47 H 0.09 2.39 7.27 -51.93 -0.38 2.02 16 48 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 49 H 0.06 0.43 7.77 -51.93 -0.40 0.03 16 50 H 0.09 0.77 7.65 -51.93 -0.40 0.37 16 LS Contribution 398.22 15.07 6.00 6.00 Total: -1.00 -28.77 398.22 -9.50 -38.27 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -7.68 Total: 13.99 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -1.05 Total: 12.82 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -1.45 Total: -50.48 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.30 Total: -35.81 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.77 -9.50 -38.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328583146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.884 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds