Wall clock time and date at job start Wed Apr 1 2020 00:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47258 * 2 1 4 4 N 1.46901 * 109.46977 * 179.97438 * 3 2 1 5 5 C 1.48537 * 110.99773 * 287.39109 * 4 3 2 6 6 C 1.54938 * 103.22543 * 200.28038 * 5 4 3 7 7 C 1.54597 * 102.92319 * 37.41417 * 6 5 4 8 8 H 1.08999 * 110.39026 * 96.99552 * 7 6 5 9 9 N 1.46498 * 110.31051 * 219.12730 * 7 6 5 10 10 C 1.34776 * 119.99901 * 270.71262 * 9 7 6 11 11 O 1.21354 * 120.00083 * 0.02562 * 10 9 7 12 12 C 1.49449 * 120.00301 * 179.97438 * 10 9 7 13 13 O 1.21350 * 119.99724 * 0.02562 * 12 10 9 14 14 N 1.34771 * 120.00335 * 180.02562 * 12 10 9 15 15 C 1.47026 * 125.64720 * 359.68994 * 14 12 10 16 16 C 1.54341 * 107.26550 * 178.85222 * 15 14 12 17 17 C 1.55153 * 103.01892 * 338.14172 * 16 15 14 18 18 O 1.42903 * 111.04013 * 277.21773 * 17 16 15 19 19 C 1.50700 * 111.00284 * 153.38172 * 17 16 15 20 20 H 1.07998 * 119.99822 * 4.48468 * 19 17 16 21 21 C 1.37876 * 120.00209 * 184.49077 * 19 17 16 22 22 N 1.31522 * 120.00000 * 5.27681 * 21 19 17 23 23 Si 1.86797 * 120.00106 * 185.27410 * 21 19 17 24 24 H 1.48500 * 109.47221 * 85.00011 * 23 21 19 25 25 H 1.48501 * 109.47059 * 204.99390 * 23 21 19 26 26 H 1.48492 * 109.47200 * 324.99224 * 23 21 19 27 27 C 1.47425 * 125.64988 * 180.02562 * 14 12 10 28 28 C 1.47899 * 110.99956 * 169.99551 * 4 3 2 29 29 H 1.08999 * 109.47495 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47427 * 300.00850 * 1 2 3 31 31 H 1.09008 * 109.46573 * 60.00422 * 1 2 3 32 32 H 1.08996 * 109.46961 * 239.99330 * 2 1 3 33 33 H 1.09008 * 109.46573 * 119.99578 * 2 1 3 34 34 H 1.08993 * 109.47595 * 59.99253 * 3 2 1 35 35 H 1.09003 * 109.46553 * 299.99164 * 3 2 1 36 36 H 1.08995 * 110.66499 * 318.71718 * 5 4 3 37 37 H 1.08999 * 110.66687 * 81.67947 * 5 4 3 38 38 H 1.09000 * 110.72547 * 279.05768 * 6 5 4 39 39 H 1.09003 * 110.72230 * 155.77037 * 6 5 4 40 40 H 0.96993 * 119.99979 * 90.71394 * 9 7 6 41 41 H 1.09002 * 109.88423 * 298.39725 * 15 14 12 42 42 H 1.09003 * 109.88147 * 59.56503 * 15 14 12 43 43 H 1.08999 * 110.84381 * 219.67718 * 16 15 14 44 44 H 1.08997 * 110.51208 * 96.45071 * 16 15 14 45 45 H 0.96699 * 113.99976 * 166.77703 * 18 17 16 46 46 H 0.96997 * 119.99784 * 180.02562 * 22 21 19 47 47 H 1.08996 * 110.36794 * 322.93243 * 27 14 12 48 48 H 1.09004 * 110.36802 * 85.25430 * 27 14 12 49 49 H 1.09001 * 109.91490 * 26.48907 * 28 4 3 50 50 H 1.09003 * 110.08419 * 265.28970 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0407 1.0281 1.3242 6 6 5.4886 1.5796 1.3130 7 6 5.3381 2.9312 0.5779 8 1 5.2537 3.7468 1.2961 9 7 6.4792 3.1553 -0.3131 10 6 7.5810 3.7802 0.1472 11 8 7.6281 4.1569 1.2998 12 6 8.7454 4.0083 -0.7615 13 8 8.6985 3.6312 -1.9140 14 7 9.8474 4.6328 -0.3011 15 6 10.0347 5.1446 1.0644 16 6 11.4525 5.7505 1.1360 17 6 12.1922 5.0480 -0.0331 18 8 12.6704 3.7607 0.3621 19 6 13.3191 5.9040 -0.5511 20 1 13.5601 6.8349 -0.0595 21 6 14.0424 5.4988 -1.6528 22 7 13.6844 4.4196 -2.3139 23 14 15.5307 6.4825 -2.2065 24 1 16.7253 6.0468 -1.4395 25 1 15.7630 6.2553 -3.6555 26 1 15.2869 7.9272 -1.9648 27 6 11.0619 4.9220 -1.0852 28 6 4.0392 2.8021 -0.2392 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8898 35 1 1.6768 1.9562 -0.8901 36 1 3.4628 1.4809 2.1298 37 1 4.0407 -0.0580 1.4160 38 1 6.1512 0.9124 0.7618 39 1 5.8512 1.7317 2.3297 40 1 6.4417 2.8539 -1.2342 41 1 9.2905 5.9118 1.2782 42 1 9.9457 4.3287 1.7816 43 1 11.9268 5.5159 2.0889 44 1 11.4158 6.8281 0.9771 45 1 12.9565 3.2041 -0.3750 46 1 14.1934 4.1343 -3.0887 47 1 11.2733 4.1034 -1.7729 48 1 10.9465 5.8579 -1.6321 49 1 3.3158 3.5467 0.0932 50 1 4.2523 2.9392 -1.2994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328583146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:55 Heat of formation + Delta-G solvation = -133.186398 kcal Electronic energy + Delta-G solvation = -30057.283373 eV Core-core repulsion = 25890.431286 eV Total energy + Delta-G solvation = -4166.852087 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.90374 -40.56077 -39.52486 -38.85076 -36.53016 -35.89810 -34.28472 -34.25232 -31.95621 -31.30125 -29.80790 -29.57506 -27.66919 -26.38164 -25.28795 -23.56012 -22.95435 -21.77246 -21.57538 -21.54307 -20.95691 -19.13108 -18.75509 -18.15348 -17.30557 -17.19523 -17.08290 -16.84437 -16.28052 -16.18261 -15.83772 -15.80783 -15.33673 -14.88313 -14.68388 -14.64006 -14.50901 -14.18793 -13.95934 -13.90317 -13.51639 -13.36256 -13.27791 -13.07980 -12.82977 -12.78956 -12.69171 -12.54957 -12.46756 -12.36167 -12.22876 -12.20283 -12.10148 -11.95111 -11.76044 -11.46838 -11.23723 -10.74664 -10.58487 -10.35254 -10.30375 -9.65778 -9.43267 -8.24587 -6.40577 0.32912 1.25001 1.44254 1.46443 1.54775 2.10737 2.37487 2.49674 2.93803 3.00892 3.28971 3.45538 3.66323 3.77363 4.00167 4.04296 4.09132 4.15067 4.18948 4.23979 4.31589 4.32427 4.48897 4.58963 4.63472 4.65985 4.67946 4.74388 4.80295 4.84142 4.93203 4.96598 4.97634 5.05052 5.07097 5.14590 5.22220 5.28056 5.31385 5.33146 5.42173 5.43325 5.74588 5.82439 5.97712 6.05782 6.09481 6.36730 6.61120 6.68401 6.91450 7.25302 7.34352 8.81101 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032462 B = 0.002016 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.342458 B =13884.239106 C =14226.099611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.046 3.954 4 N -0.528 5.528 5 C 0.043 3.957 6 C -0.135 4.135 7 C 0.133 3.867 8 H 0.097 0.903 9 N -0.681 5.681 10 C 0.520 3.480 11 O -0.528 6.528 12 C 0.501 3.499 13 O -0.561 6.561 14 N -0.584 5.584 15 C 0.120 3.880 16 C -0.116 4.116 17 C 0.233 3.767 18 O -0.585 6.585 19 C -0.556 4.556 20 H 0.069 0.931 21 C 0.029 3.971 22 N -0.913 5.913 23 Si 0.964 3.036 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.266 1.266 27 C 0.107 3.893 28 C 0.035 3.965 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.417 0.583 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.372 0.628 46 H 0.270 0.730 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.073 0.927 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.962 -5.060 6.245 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.082 4.082 4 N -0.253 5.253 5 C -0.085 4.085 6 C -0.174 4.174 7 C 0.029 3.971 8 H 0.115 0.885 9 N -0.334 5.334 10 C 0.301 3.699 11 O -0.404 6.404 12 C 0.284 3.716 13 O -0.441 6.441 14 N -0.316 5.316 15 C -0.002 4.002 16 C -0.153 4.153 17 C 0.192 3.808 18 O -0.392 6.392 19 C -0.594 4.594 20 H 0.088 0.912 21 C -0.172 4.172 22 N -0.552 5.552 23 Si 0.790 3.210 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.190 1.190 27 C -0.015 4.015 28 C -0.093 4.093 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.255 0.745 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.220 0.780 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.997 -5.243 6.487 25.405 hybrid contribution 0.986 0.488 -1.075 1.538 sum -23.011 -4.755 5.411 24.112 Atomic orbital electron populations 1.21722 0.94742 1.02181 1.02056 1.21441 0.96021 0.95682 1.02283 1.22397 0.86287 0.98065 1.01466 1.64784 1.09078 1.21920 1.29519 1.23229 0.93390 1.01727 0.90112 1.22927 0.97885 0.95513 1.01061 1.22065 0.84289 0.98848 0.91907 0.88458 1.45838 1.14179 1.57035 1.16396 1.19768 0.83915 0.79150 0.87105 1.90716 1.81256 1.50453 1.18019 1.20252 0.83987 0.79636 0.87683 1.90709 1.81964 1.52122 1.19325 1.48738 1.14690 1.53488 1.14668 1.22164 0.97582 0.98809 0.81659 1.22730 0.92920 1.00186 0.99502 1.19875 0.89404 0.81865 0.89621 1.86151 1.85622 1.29119 1.38310 1.21743 1.16676 1.07485 1.13472 0.91238 1.25796 0.99831 0.96046 0.95556 1.69864 1.40339 1.25259 1.19712 0.85471 0.79357 0.79233 0.76966 1.20172 1.21096 1.19024 1.23089 0.82851 0.99687 0.95862 1.23071 0.94101 0.91021 1.01104 0.92171 0.92450 0.92467 0.92039 0.92096 0.93782 0.90416 0.92252 0.89053 0.91176 0.90230 0.74488 0.89675 0.91191 0.89627 0.88999 0.78018 0.92120 0.92229 0.92591 0.90913 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.12 -1.27 6.02 30.59 0.18 -1.09 16 3 C 0.05 0.53 4.71 86.30 0.41 0.94 16 4 N -0.53 -7.88 5.24 -883.01 -4.63 -12.51 16 5 C 0.04 0.61 5.91 86.65 0.51 1.12 16 6 C -0.13 -2.46 6.78 31.80 0.22 -2.24 16 7 C 0.13 2.56 3.34 45.87 0.15 2.71 16 8 H 0.10 1.97 7.56 -2.39 -0.02 1.95 16 9 N -0.68 -16.89 5.05 -439.70 -2.22 -19.12 16 10 C 0.52 16.87 7.86 87.27 0.69 17.56 16 11 O -0.53 -18.00 13.77 -3.26 -0.04 -18.04 16 12 C 0.50 20.04 7.91 87.27 0.69 20.73 16 13 O -0.56 -24.83 16.73 -3.25 -0.05 -24.89 16 14 N -0.58 -24.68 3.33 -813.28 -2.70 -27.38 16 15 C 0.12 4.47 5.49 86.73 0.48 4.94 16 16 C -0.12 -4.58 6.13 31.79 0.19 -4.39 16 17 C 0.23 11.28 0.86 -10.14 -0.01 11.28 16 18 O -0.58 -30.04 13.14 -148.98 -1.96 -31.99 16 19 C -0.56 -28.76 8.25 25.60 0.21 -28.55 16 20 H 0.07 3.48 7.79 -2.91 -0.02 3.46 16 21 C 0.03 1.51 5.32 84.65 0.45 1.96 16 22 N -0.91 -49.06 10.80 21.45 0.23 -48.83 16 23 Si 0.96 41.47 29.54 68.60 2.03 43.49 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 27 C 0.11 5.18 5.35 86.86 0.47 5.65 16 28 C 0.04 0.53 6.43 86.45 0.56 1.09 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.67 7.36 -2.38 -0.02 0.65 16 34 H 0.04 0.47 7.83 -2.39 -0.02 0.45 16 35 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 36 H 0.06 0.71 7.81 -2.39 -0.02 0.69 16 37 H 0.09 1.20 7.80 -2.39 -0.02 1.18 16 38 H 0.07 1.48 8.06 -2.39 -0.02 1.46 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.42 9.94 7.82 -92.71 -0.73 9.22 16 41 H 0.09 2.83 7.71 -2.39 -0.02 2.82 16 42 H 0.07 2.62 7.57 -2.39 -0.02 2.60 16 43 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.09 3.35 8.03 -2.39 -0.02 3.34 16 45 H 0.37 19.66 7.71 -74.06 -0.57 19.09 16 46 H 0.27 13.91 8.31 -92.71 -0.77 13.13 16 47 H 0.06 3.24 7.27 -2.39 -0.02 3.23 16 48 H 0.06 2.79 8.03 -2.39 -0.02 2.77 16 49 H 0.07 0.90 7.77 -2.39 -0.02 0.88 16 50 H 0.09 1.37 7.65 -2.39 -0.02 1.35 16 Total: -1.00 -61.28 398.22 -3.79 -65.08 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: -0.34 Total: 43.05 kcal Atomic # 6 Polarization: 25.23 SS G_CDS: 5.91 Total: 31.14 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -9.32 Total: -107.84 kcal Atomic # 8 Polarization: -72.87 SS G_CDS: -2.06 Total: -74.92 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -61.28 -3.79 -65.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328583146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.108 kcal (2) G-P(sol) polarization free energy of solvation -61.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds