Wall clock time and date at job start Wed Apr 1 2020 00:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47115 * 2 1 4 4 N 1.46901 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.48565 * 110.99769 * 290.12520 * 4 3 2 6 6 C 1.54380 * 104.59236 * 200.96048 * 5 4 3 7 7 C 1.54256 * 105.06317 * 23.85437 * 6 5 4 8 8 H 1.08998 * 110.32646 * 240.99982 * 7 6 5 9 9 N 1.46502 * 110.32555 * 118.89499 * 7 6 5 10 10 C 1.34775 * 120.00211 * 86.45171 * 9 7 6 11 11 O 1.21345 * 119.99610 * 0.02562 * 10 9 7 12 12 C 1.49446 * 120.00324 * 179.97438 * 10 9 7 13 13 O 1.21351 * 119.99790 * 0.02562 * 12 10 9 14 14 N 1.34775 * 120.00324 * 179.97438 * 12 10 9 15 15 C 1.47424 * 125.64601 * 0.03365 * 14 12 10 16 16 C 1.54912 * 104.83198 * 155.83331 * 15 14 12 17 17 C 1.55156 * 101.58207 * 37.00458 * 16 15 14 18 18 O 1.42907 * 110.71634 * 83.03796 * 17 16 15 19 19 C 1.50694 * 110.71910 * 206.13536 * 17 16 15 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 17 16 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 17 16 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 C 1.47021 * 125.65074 * 179.97438 * 14 12 10 28 28 C 1.48560 * 111.00130 * 174.71128 * 4 3 2 29 29 H 1.09009 * 109.47275 * 299.99705 * 1 2 3 30 30 H 1.08994 * 109.47308 * 59.99578 * 1 2 3 31 31 H 1.09000 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47386 * 240.00420 * 2 1 3 33 33 H 1.09004 * 109.47554 * 119.99910 * 2 1 3 34 34 H 1.08999 * 109.46695 * 60.00523 * 3 2 1 35 35 H 1.08997 * 109.46999 * 300.00014 * 3 2 1 36 36 H 1.08997 * 110.41263 * 82.18408 * 5 4 3 37 37 H 1.08997 * 110.41437 * 319.73755 * 5 4 3 38 38 H 1.09002 * 110.32404 * 264.95147 * 6 5 4 39 39 H 1.09006 * 110.32136 * 142.75162 * 6 5 4 40 40 H 0.97003 * 119.99585 * 266.45877 * 9 7 6 41 41 H 1.08998 * 110.37026 * 36.98905 * 15 14 12 42 42 H 1.09005 * 110.45410 * 274.71822 * 15 14 12 43 43 H 1.08999 * 110.99984 * 278.93381 * 16 15 14 44 44 H 1.08996 * 111.00257 * 155.08324 * 16 15 14 45 45 H 0.96701 * 113.99675 * 182.43417 * 18 17 16 46 46 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 47 47 H 1.09007 * 109.88098 * 61.67615 * 27 14 12 48 48 H 1.09001 * 109.88532 * 300.51942 * 27 14 12 49 49 H 1.09001 * 110.41051 * 40.25166 * 28 4 3 50 50 H 1.09005 * 110.40652 * 277.81667 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0419 0.9651 1.3014 6 6 5.4838 1.5140 1.3563 7 6 5.4834 2.7366 0.4157 8 1 6.1895 2.5862 -0.4010 9 7 5.8203 3.9521 1.1609 10 6 7.1107 4.2984 1.3377 11 8 7.9936 3.6035 0.8791 12 6 7.4543 5.5386 2.0974 13 8 6.5714 6.2337 2.5555 14 7 8.7448 5.8846 2.2746 15 6 9.9117 5.1350 1.7747 16 6 11.0446 6.1867 1.6729 17 6 10.7631 7.0693 2.9176 18 8 11.3325 6.4850 4.0909 19 6 11.2892 8.4661 2.7107 20 1 11.7824 8.7260 1.7857 21 6 11.1410 9.4126 3.7024 22 7 10.5400 9.0963 4.8286 23 14 11.7939 11.1439 3.4461 24 1 13.1967 11.2202 3.9272 25 1 11.7471 11.4817 2.0008 26 1 10.9567 12.1061 4.2068 27 6 9.2220 7.0726 2.9974 28 6 4.0413 2.8236 -0.1285 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 4.0484 -0.1244 1.3330 37 1 3.4507 1.3667 2.1244 38 1 6.1887 0.7626 1.0004 39 1 5.7346 1.8183 2.3726 40 1 5.1144 4.5076 1.5272 41 1 9.6984 4.7111 0.7935 42 1 10.1872 4.3472 2.4758 43 1 10.9574 6.7672 0.7545 44 1 12.0241 5.7137 1.7428 45 1 11.1530 6.9787 4.9028 46 1 10.4361 9.7621 5.5264 47 1 8.9045 7.0251 4.0391 48 1 8.8284 7.9746 2.5287 49 1 3.4499 3.5160 0.4707 50 1 4.0474 3.1334 -1.1736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328583148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:03 Heat of formation + Delta-G solvation = -110.514779 kcal Electronic energy + Delta-G solvation = -30016.363938 eV Core-core repulsion = 25850.494967 eV Total energy + Delta-G solvation = -4165.868972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.61674 -39.47127 -38.24497 -37.23495 -35.56000 -34.37731 -33.44041 -32.20193 -30.59182 -30.17465 -28.91515 -27.96422 -26.16459 -25.47539 -23.79991 -22.48218 -22.10902 -21.34894 -20.37817 -19.84444 -19.44162 -17.37010 -17.22283 -16.94916 -16.42084 -16.09377 -15.69086 -15.52244 -15.19199 -14.82029 -14.53305 -14.32123 -14.07027 -13.97147 -13.73780 -13.26914 -13.04097 -12.99156 -12.88789 -12.73089 -12.36838 -12.24863 -12.11095 -11.86021 -11.75987 -11.65848 -11.53760 -11.34267 -11.14620 -11.09002 -11.03597 -10.91852 -10.79391 -10.59130 -10.49649 -10.18674 -9.38955 -9.31159 -9.15776 -8.92319 -8.68245 -8.35953 -8.05178 -6.32942 -4.41070 1.73280 2.53445 3.19304 3.26803 3.29606 3.52938 3.54191 3.92094 4.15502 4.24512 4.31988 4.59275 4.65582 4.67988 4.80352 4.89289 4.94238 4.95437 5.04334 5.10547 5.23165 5.31290 5.33894 5.47986 5.49252 5.58828 5.63237 5.72133 5.75806 5.82290 5.82801 5.86834 5.88271 6.02707 6.12157 6.30568 6.46945 6.49850 6.58521 6.74054 6.77351 6.81040 7.13498 7.18802 7.30536 7.69936 7.83056 7.98540 7.99993 8.39061 8.62426 9.27709 9.40244 10.75111 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029670 B = 0.002021 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.495201 B =13850.524589 C =14233.632269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.043 3.957 4 N -0.508 5.508 5 C 0.032 3.968 6 C -0.136 4.136 7 C 0.142 3.858 8 H 0.104 0.896 9 N -0.704 5.704 10 C 0.514 3.486 11 O -0.513 6.513 12 C 0.506 3.494 13 O -0.540 6.540 14 N -0.574 5.574 15 C 0.099 3.901 16 C -0.121 4.121 17 C 0.248 3.752 18 O -0.583 6.583 19 C -0.536 4.536 20 H 0.068 0.932 21 C 0.070 3.930 22 N -0.897 5.897 23 Si 0.905 3.095 24 H -0.277 1.277 25 H -0.272 1.272 26 H -0.284 1.284 27 C 0.098 3.902 28 C 0.027 3.973 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.410 0.590 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.385 0.615 46 H 0.271 0.729 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.053 0.947 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.757 -15.319 -8.173 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.085 4.085 4 N -0.232 5.232 5 C -0.096 4.096 6 C -0.175 4.175 7 C 0.036 3.964 8 H 0.122 0.878 9 N -0.358 5.358 10 C 0.295 3.705 11 O -0.388 6.388 12 C 0.288 3.712 13 O -0.419 6.419 14 N -0.306 5.306 15 C -0.024 4.024 16 C -0.159 4.159 17 C 0.207 3.793 18 O -0.393 6.393 19 C -0.574 4.574 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.536 5.536 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.197 1.197 26 H -0.210 1.210 27 C -0.023 4.023 28 C -0.101 4.101 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.247 0.753 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.237 0.763 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.326 -16.172 -8.970 24.018 hybrid contribution -0.651 2.190 1.311 2.634 sum -15.976 -13.982 -7.659 22.570 Atomic orbital electron populations 1.21745 0.95563 1.01856 1.01824 1.21480 0.95409 0.96065 1.02774 1.22354 0.87310 0.97694 1.01161 1.65411 1.08176 1.18294 1.31343 1.23175 0.95006 1.01129 0.90303 1.22784 0.96692 0.97594 1.00457 1.21716 0.96437 0.83660 0.94545 0.87788 1.45895 1.07652 1.26446 1.55831 1.20415 0.83163 0.86280 0.80643 1.90704 1.46791 1.52927 1.48336 1.19571 0.82964 0.86131 0.82579 1.90723 1.46599 1.53656 1.50910 1.48693 1.04253 1.26395 1.51244 1.22646 0.84944 0.94784 0.99977 1.22829 0.97469 0.96627 0.98965 1.19499 0.85879 0.90943 0.82961 1.86105 1.78634 1.55505 1.19098 1.21540 1.38679 0.94518 1.02705 0.91356 1.25085 0.93782 0.99559 0.94866 1.69576 1.42205 1.35722 1.06129 0.86370 0.78888 0.82986 0.78488 1.20326 1.19678 1.20999 1.23281 0.98606 0.84517 0.95913 1.23343 0.93867 0.90680 1.02232 0.92848 0.92616 0.92468 0.91048 0.92017 0.94440 0.90571 0.89738 0.93571 0.89892 0.90482 0.75334 0.89483 0.91339 0.90506 0.90259 0.76295 0.91882 0.91222 0.90943 0.92840 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.15 0.37 -0.42 16 2 C -0.12 -0.73 5.99 -26.73 -0.16 -0.89 16 3 C 0.04 0.30 4.81 -3.82 -0.02 0.28 16 4 N -0.51 -4.18 5.37 -229.96 -1.24 -5.42 16 5 C 0.03 0.26 5.74 -2.18 -0.01 0.24 16 6 C -0.14 -1.31 6.78 -25.35 -0.17 -1.48 16 7 C 0.14 1.46 3.36 -66.55 -0.22 1.24 16 8 H 0.10 1.19 7.64 -51.93 -0.40 0.79 16 9 N -0.70 -8.74 5.03 -52.90 -0.27 -9.01 16 10 C 0.51 8.32 7.85 -11.59 -0.09 8.23 16 11 O -0.51 -8.92 13.47 5.50 0.07 -8.84 16 12 C 0.51 9.90 7.91 -11.59 -0.09 9.81 16 13 O -0.54 -11.52 16.80 5.50 0.09 -11.43 16 14 N -0.57 -12.02 3.33 -171.03 -0.57 -12.59 16 15 C 0.10 1.90 6.06 -2.53 -0.02 1.88 16 16 C -0.12 -2.47 6.22 -24.58 -0.15 -2.62 16 17 C 0.25 5.98 0.85 -89.94 -0.08 5.91 16 18 O -0.58 -14.72 13.08 -35.23 -0.46 -15.18 16 19 C -0.54 -13.87 8.10 -34.44 -0.28 -14.15 16 20 H 0.07 1.74 7.76 -52.49 -0.41 1.33 16 21 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 22 N -0.90 -23.49 10.99 55.43 0.61 -22.88 16 23 Si 0.91 20.22 29.54 -169.99 -5.02 15.20 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 C 0.10 2.33 5.54 -3.07 -0.02 2.31 16 28 C 0.03 0.23 6.19 -2.18 -0.01 0.21 16 29 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.39 7.26 -51.93 -0.38 0.01 16 34 H 0.04 0.26 7.88 -51.93 -0.41 -0.15 16 35 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 36 H 0.08 0.62 7.76 -51.93 -0.40 0.22 16 37 H 0.05 0.37 7.82 -51.93 -0.41 -0.04 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.82 7.95 -51.93 -0.41 0.41 16 40 H 0.41 4.74 7.82 -40.82 -0.32 4.42 16 41 H 0.09 1.56 6.15 -51.93 -0.32 1.24 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.08 1.50 8.02 -51.93 -0.42 1.08 16 44 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 45 H 0.39 9.94 7.04 45.56 0.32 10.26 16 46 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 47 H 0.07 1.78 8.07 -51.92 -0.42 1.36 16 48 H 0.07 1.84 7.81 -51.93 -0.41 1.43 16 49 H 0.05 0.42 7.59 -51.93 -0.39 0.03 16 50 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 397.71 15.07 5.99 5.99 Total: -1.00 -28.48 397.71 -9.54 -38.02 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -7.71 Total: 13.89 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -1.05 Total: 12.25 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -1.46 Total: -49.89 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.29 Total: -35.45 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.48 -9.54 -38.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328583148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.494 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds