Wall clock time and date at job start Wed Apr 1 2020 00:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47115 * 2 1 4 4 N 1.46901 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.48565 * 110.99769 * 290.12520 * 4 3 2 6 6 C 1.54380 * 104.59236 * 200.96048 * 5 4 3 7 7 C 1.54256 * 105.06317 * 23.85437 * 6 5 4 8 8 H 1.08998 * 110.32646 * 240.99982 * 7 6 5 9 9 N 1.46502 * 110.32555 * 118.89499 * 7 6 5 10 10 C 1.34775 * 120.00211 * 86.45171 * 9 7 6 11 11 O 1.21345 * 119.99610 * 0.02562 * 10 9 7 12 12 C 1.49446 * 120.00324 * 179.97438 * 10 9 7 13 13 O 1.21351 * 119.99790 * 0.02562 * 12 10 9 14 14 N 1.34775 * 120.00324 * 179.97438 * 12 10 9 15 15 C 1.47424 * 125.64601 * 0.03365 * 14 12 10 16 16 C 1.54912 * 104.83198 * 155.83331 * 15 14 12 17 17 C 1.55156 * 101.58207 * 37.00458 * 16 15 14 18 18 O 1.42907 * 110.71634 * 83.03796 * 17 16 15 19 19 C 1.50694 * 110.71910 * 206.13536 * 17 16 15 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 17 16 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 17 16 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 C 1.47021 * 125.65074 * 179.97438 * 14 12 10 28 28 C 1.48560 * 111.00130 * 174.71128 * 4 3 2 29 29 H 1.09009 * 109.47275 * 299.99705 * 1 2 3 30 30 H 1.08994 * 109.47308 * 59.99578 * 1 2 3 31 31 H 1.09000 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47386 * 240.00420 * 2 1 3 33 33 H 1.09004 * 109.47554 * 119.99910 * 2 1 3 34 34 H 1.08999 * 109.46695 * 60.00523 * 3 2 1 35 35 H 1.08997 * 109.46999 * 300.00014 * 3 2 1 36 36 H 1.08997 * 110.41263 * 82.18408 * 5 4 3 37 37 H 1.08997 * 110.41437 * 319.73755 * 5 4 3 38 38 H 1.09002 * 110.32404 * 264.95147 * 6 5 4 39 39 H 1.09006 * 110.32136 * 142.75162 * 6 5 4 40 40 H 0.97003 * 119.99585 * 266.45877 * 9 7 6 41 41 H 1.08998 * 110.37026 * 36.98905 * 15 14 12 42 42 H 1.09005 * 110.45410 * 274.71822 * 15 14 12 43 43 H 1.08999 * 110.99984 * 278.93381 * 16 15 14 44 44 H 1.08996 * 111.00257 * 155.08324 * 16 15 14 45 45 H 0.96701 * 113.99675 * 182.43417 * 18 17 16 46 46 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 47 47 H 1.09007 * 109.88098 * 61.67615 * 27 14 12 48 48 H 1.09001 * 109.88532 * 300.51942 * 27 14 12 49 49 H 1.09001 * 110.41051 * 40.25166 * 28 4 3 50 50 H 1.09005 * 110.40652 * 277.81667 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0419 0.9651 1.3014 6 6 5.4838 1.5140 1.3563 7 6 5.4834 2.7366 0.4157 8 1 6.1895 2.5862 -0.4010 9 7 5.8203 3.9521 1.1609 10 6 7.1107 4.2984 1.3377 11 8 7.9936 3.6035 0.8791 12 6 7.4543 5.5386 2.0974 13 8 6.5714 6.2337 2.5555 14 7 8.7448 5.8846 2.2746 15 6 9.9117 5.1350 1.7747 16 6 11.0446 6.1867 1.6729 17 6 10.7631 7.0693 2.9176 18 8 11.3325 6.4850 4.0909 19 6 11.2892 8.4661 2.7107 20 1 11.7824 8.7260 1.7857 21 6 11.1410 9.4126 3.7024 22 7 10.5400 9.0963 4.8286 23 14 11.7939 11.1439 3.4461 24 1 13.1967 11.2202 3.9272 25 1 11.7471 11.4817 2.0008 26 1 10.9567 12.1061 4.2068 27 6 9.2220 7.0726 2.9974 28 6 4.0413 2.8236 -0.1285 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 4.0484 -0.1244 1.3330 37 1 3.4507 1.3667 2.1244 38 1 6.1887 0.7626 1.0004 39 1 5.7346 1.8183 2.3726 40 1 5.1144 4.5076 1.5272 41 1 9.6984 4.7111 0.7935 42 1 10.1872 4.3472 2.4758 43 1 10.9574 6.7672 0.7545 44 1 12.0241 5.7137 1.7428 45 1 11.1530 6.9787 4.9028 46 1 10.4361 9.7621 5.5264 47 1 8.9045 7.0251 4.0391 48 1 8.8284 7.9746 2.5287 49 1 3.4499 3.5160 0.4707 50 1 4.0474 3.1334 -1.1736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328583148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:02 Heat of formation + Delta-G solvation = -132.213188 kcal Electronic energy + Delta-G solvation = -30017.304852 eV Core-core repulsion = 25850.494967 eV Total energy + Delta-G solvation = -4166.809885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.95238 -40.58210 -39.53839 -38.90316 -36.59145 -35.94796 -34.29709 -34.19029 -31.91030 -31.29765 -29.85429 -29.62098 -27.69263 -26.40522 -25.29545 -23.64123 -23.02579 -22.07517 -21.57984 -21.16635 -20.90962 -19.17902 -18.79898 -18.15046 -17.49497 -17.26115 -17.06645 -16.91479 -16.32580 -16.24734 -15.91470 -15.51349 -15.03142 -14.96176 -14.81761 -14.76506 -14.60312 -14.35150 -14.03607 -13.87887 -13.55698 -13.44426 -13.34081 -12.94488 -12.87877 -12.78906 -12.68293 -12.54106 -12.46486 -12.33517 -12.27534 -12.26632 -12.07802 -11.91132 -11.71413 -11.47192 -11.23650 -10.75943 -10.56254 -10.37077 -10.31170 -9.77058 -9.55267 -8.28570 -6.43962 0.29290 1.19443 1.42561 1.44413 1.53755 2.07283 2.34792 2.43189 2.97060 2.99203 3.28823 3.43782 3.63142 3.78563 3.97427 4.04693 4.09169 4.13533 4.19882 4.21820 4.29996 4.34415 4.46981 4.55902 4.58865 4.64320 4.69981 4.75233 4.80203 4.84203 4.91552 4.93824 4.95902 5.06919 5.08210 5.09272 5.20001 5.22717 5.30512 5.31049 5.42109 5.42570 5.72549 5.76570 5.91961 6.00190 6.04739 6.33878 6.57834 6.65008 6.87775 7.27511 7.37081 8.78132 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029670 B = 0.002021 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.495201 B =13850.524589 C =14233.632269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.043 3.957 4 N -0.515 5.515 5 C 0.037 3.963 6 C -0.135 4.135 7 C 0.139 3.861 8 H 0.097 0.903 9 N -0.683 5.683 10 C 0.523 3.477 11 O -0.524 6.524 12 C 0.502 3.498 13 O -0.561 6.561 14 N -0.583 5.583 15 C 0.109 3.891 16 C -0.115 4.115 17 C 0.233 3.767 18 O -0.588 6.588 19 C -0.557 4.557 20 H 0.069 0.931 21 C 0.027 3.973 22 N -0.917 5.917 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.268 1.268 26 H -0.284 1.284 27 C 0.115 3.885 28 C 0.033 3.967 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.416 0.584 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.379 0.621 46 H 0.272 0.728 47 H 0.042 0.958 48 H 0.049 0.951 49 H 0.061 0.939 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.641 -16.151 -9.463 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.085 4.085 4 N -0.239 5.239 5 C -0.091 4.091 6 C -0.174 4.174 7 C 0.035 3.965 8 H 0.115 0.885 9 N -0.337 5.337 10 C 0.303 3.697 11 O -0.400 6.400 12 C 0.285 3.715 13 O -0.441 6.441 14 N -0.315 5.315 15 C -0.013 4.013 16 C -0.152 4.152 17 C 0.192 3.808 18 O -0.397 6.397 19 C -0.595 4.595 20 H 0.087 0.913 21 C -0.174 4.174 22 N -0.556 5.556 23 Si 0.791 3.209 24 H -0.199 1.199 25 H -0.192 1.192 26 H -0.209 1.209 27 C -0.007 4.007 28 C -0.096 4.096 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.254 0.746 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.230 0.770 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.245 -17.038 -10.283 25.689 hybrid contribution -0.456 2.410 1.721 2.996 sum -16.701 -14.628 -8.562 23.795 Atomic orbital electron populations 1.21726 0.94812 1.02234 1.02003 1.21447 0.96022 0.95481 1.02446 1.22401 0.86382 0.98256 1.01461 1.65445 1.09094 1.18010 1.31331 1.23140 0.93840 1.01622 0.90452 1.22743 0.97885 0.97196 0.99536 1.21893 0.97648 0.82717 0.94224 0.88492 1.45853 1.06276 1.26853 1.54743 1.19703 0.84365 0.84989 0.80644 1.90698 1.47378 1.52876 1.49083 1.20266 0.82146 0.86990 0.82098 1.90702 1.47093 1.54674 1.51653 1.48722 1.05397 1.25890 1.51509 1.22643 0.83787 0.94051 1.00780 1.22830 0.98584 0.96406 0.97430 1.19713 0.85844 0.91414 0.83791 1.86095 1.78856 1.55533 1.19253 1.21833 1.39089 0.95660 1.02931 0.91305 1.25807 0.93949 1.02928 0.94679 1.69669 1.42689 1.36647 1.06609 0.85437 0.78262 0.78802 0.78442 1.19900 1.19223 1.20945 1.22803 0.98631 0.84968 0.94340 1.23316 0.92365 0.91143 1.02733 0.92782 0.92317 0.92030 0.91520 0.92177 0.94324 0.90055 0.88869 0.93273 0.89922 0.91505 0.74628 0.87638 0.91352 0.89587 0.89117 0.77031 0.91838 0.93982 0.93278 0.92093 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.12 -1.21 5.99 30.59 0.18 -1.03 16 3 C 0.04 0.50 4.81 86.31 0.41 0.92 16 4 N -0.51 -7.37 5.37 -881.47 -4.73 -12.10 16 5 C 0.04 0.53 5.74 86.45 0.50 1.03 16 6 C -0.13 -2.39 6.78 31.49 0.21 -2.18 16 7 C 0.14 2.64 3.36 45.88 0.15 2.79 16 8 H 0.10 2.05 7.64 -2.39 -0.02 2.03 16 9 N -0.68 -16.02 5.03 -439.64 -2.21 -18.23 16 10 C 0.52 16.39 7.85 87.27 0.69 17.07 16 11 O -0.52 -17.46 13.47 -3.23 -0.04 -17.51 16 12 C 0.50 19.57 7.91 87.27 0.69 20.26 16 13 O -0.56 -24.10 16.80 -3.25 -0.05 -24.16 16 14 N -0.58 -24.51 3.33 -813.37 -2.71 -27.21 16 15 C 0.11 4.08 6.06 86.86 0.53 4.61 16 16 C -0.11 -4.60 6.22 31.99 0.20 -4.40 16 17 C 0.23 11.36 0.85 -10.36 -0.01 11.35 16 18 O -0.59 -30.14 13.08 -148.98 -1.95 -32.09 16 19 C -0.56 -29.00 8.10 25.60 0.21 -28.79 16 20 H 0.07 3.49 7.76 -2.91 -0.02 3.46 16 21 C 0.03 1.40 5.29 84.66 0.45 1.85 16 22 N -0.92 -48.86 10.99 21.45 0.24 -48.63 16 23 Si 0.97 41.46 29.54 68.60 2.03 43.49 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 26 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 27 C 0.12 5.62 5.54 86.73 0.48 6.10 16 28 C 0.03 0.48 6.19 86.45 0.54 1.01 16 29 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.65 7.26 -2.39 -0.02 0.63 16 34 H 0.04 0.45 7.88 -2.39 -0.02 0.43 16 35 H 0.08 0.88 8.13 -2.39 -0.02 0.86 16 36 H 0.09 1.19 7.76 -2.39 -0.02 1.17 16 37 H 0.05 0.68 7.82 -2.39 -0.02 0.66 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.34 7.95 -2.38 -0.02 1.32 16 40 H 0.42 9.00 7.82 -92.71 -0.72 8.27 16 41 H 0.11 3.60 6.15 -2.39 -0.01 3.59 16 42 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 43 H 0.09 3.26 8.02 -2.39 -0.02 3.24 16 44 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 45 H 0.38 20.13 7.04 -74.06 -0.52 19.61 16 46 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 47 H 0.04 2.24 8.07 -2.38 -0.02 2.23 16 48 H 0.05 2.58 7.81 -2.39 -0.02 2.56 16 49 H 0.06 0.81 7.59 -2.39 -0.02 0.79 16 50 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -60.57 397.71 -3.79 -64.36 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -0.29 Total: 42.06 kcal Atomic # 6 Polarization: 24.09 SS G_CDS: 5.94 Total: 30.03 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -9.42 Total: -106.18 kcal Atomic # 8 Polarization: -71.71 SS G_CDS: -2.05 Total: -73.75 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -60.57 -3.79 -64.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328583148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.852 kcal (2) G-P(sol) polarization free energy of solvation -60.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds