Wall clock time and date at job start Tue Mar 31 2020 22:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47162 * 239.99539 * 2 1 3 5 5 N 1.46505 * 109.46921 * 119.99803 * 2 1 3 6 6 C 1.46762 * 124.34893 * 59.99677 * 5 2 1 7 7 C 1.54481 * 105.47266 * 163.00736 * 6 5 2 8 8 H 1.09002 * 110.96936 * 267.29627 * 7 6 5 9 9 C 1.53006 * 110.96809 * 143.57110 * 7 6 5 10 10 N 1.46500 * 109.46592 * 178.08669 * 9 7 6 11 11 C 1.34774 * 119.99813 * 179.97438 * 10 9 7 12 12 O 1.21349 * 120.00329 * 0.02562 * 11 10 9 13 13 C 1.49453 * 120.00174 * 180.02562 * 11 10 9 14 14 O 1.21345 * 119.99894 * 0.02562 * 13 11 10 15 15 N 1.34782 * 119.99847 * 180.02562 * 13 11 10 16 16 C 1.46503 * 119.99589 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.46895 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46760 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00308 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99307 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00624 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99471 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46927 * 90.00078 * 22 20 18 24 24 H 1.48500 * 109.47151 * 209.99737 * 22 20 18 25 25 H 1.48494 * 109.47376 * 329.99899 * 22 20 18 26 26 C 1.54625 * 101.79703 * 25.43215 * 7 6 5 27 27 C 1.34418 * 124.34939 * 240.02576 * 5 2 1 28 28 O 1.21283 * 124.93896 * 0.40982 * 27 5 2 29 29 H 1.09002 * 109.46771 * 300.00633 * 1 2 3 30 30 H 1.09001 * 109.46334 * 59.99866 * 1 2 3 31 31 H 1.08994 * 109.47490 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46839 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46792 * 299.99484 * 3 2 1 34 34 H 1.08997 * 109.47504 * 59.99542 * 3 2 1 35 35 H 1.09007 * 109.47146 * 300.00654 * 4 2 1 36 36 H 1.08999 * 109.47313 * 60.00298 * 4 2 1 37 37 H 1.08992 * 109.47321 * 180.02562 * 4 2 1 38 38 H 1.08999 * 110.24895 * 44.00382 * 6 5 2 39 39 H 1.09000 * 110.24643 * 282.00580 * 6 5 2 40 40 H 1.08997 * 109.46903 * 298.08663 * 9 7 6 41 41 H 1.08993 * 109.46894 * 58.09225 * 9 7 6 42 42 H 0.97004 * 120.00635 * 0.02562 * 10 9 7 43 43 H 0.96998 * 120.00195 * 0.02562 * 15 13 11 44 44 H 1.09007 * 109.46743 * 299.99739 * 16 15 13 45 45 H 1.08995 * 109.47340 * 59.99405 * 16 15 13 46 46 H 1.08997 * 109.46557 * 299.99352 * 17 16 15 47 47 H 1.08999 * 109.47127 * 59.99086 * 17 16 15 48 48 H 0.96996 * 120.00433 * 179.97438 * 21 20 18 49 49 H 1.09004 * 110.48744 * 93.86686 * 26 7 6 50 50 H 1.09001 * 110.48768 * 216.49998 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1963 6 6 1.7231 -2.0907 1.5227 7 6 2.7660 -2.4941 2.5885 8 1 3.6434 -2.9449 2.1247 9 6 2.1526 -3.4375 3.6252 10 7 3.1793 -3.8347 4.5918 11 6 2.8659 -4.6684 5.6033 12 8 1.7335 -5.0905 5.7132 13 6 3.9131 -5.0732 6.5898 14 8 5.0454 -4.6508 6.4803 15 7 3.5998 -5.9074 7.6010 16 6 4.6263 -6.3037 8.5683 17 6 4.0131 -7.2478 9.6045 18 6 5.0691 -7.6560 10.5992 19 1 6.0768 -7.2800 10.5017 20 6 4.7486 -8.5094 11.6336 21 7 3.5214 -8.9669 11.7525 22 14 6.0578 -9.0160 12.8661 23 1 6.0733 -8.0523 13.9959 24 1 5.7544 -10.3759 13.3797 25 1 7.3863 -9.0224 12.2027 26 6 3.1155 -1.1276 3.2220 27 6 2.7939 -0.1232 2.1361 28 8 3.1795 1.0266 2.1172 29 1 -0.3633 0.5140 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6769 1.9562 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6768 -0.2076 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 1.8292 -2.7153 0.6357 39 1 0.7154 -2.1789 1.9286 40 1 1.3416 -2.9278 4.1453 41 1 1.7629 -4.3237 3.1244 42 1 4.0845 -3.4971 4.5043 43 1 2.6948 -6.2453 7.6883 44 1 5.4379 -6.8130 8.0486 45 1 5.0153 -5.4172 9.0691 46 1 3.2013 -6.7389 10.1242 47 1 3.6244 -8.1342 9.1033 48 1 3.2960 -9.5675 12.4800 49 1 2.5000 -0.9471 4.1034 50 1 4.1738 -1.0860 3.4798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329189620.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:09 Heat of formation + Delta-G solvation = -117.032463 kcal Electronic energy + Delta-G solvation = -28880.698192 eV Core-core repulsion = 24714.546592 eV Total energy + Delta-G solvation = -4166.151600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.33330 -40.41781 -38.43658 -37.22680 -36.98786 -35.31725 -34.41315 -32.87024 -31.17249 -29.84330 -28.67786 -27.92433 -27.86638 -26.53831 -25.14477 -23.18879 -22.10979 -21.36667 -21.05996 -20.18921 -19.04812 -18.36272 -17.25897 -16.88767 -16.76882 -16.26013 -15.97698 -15.61849 -15.31297 -14.99047 -14.80583 -14.52510 -14.47622 -14.33029 -14.24913 -14.09325 -13.78892 -13.49179 -13.08379 -13.03918 -12.73521 -12.68157 -12.55202 -12.34266 -12.26829 -12.12252 -11.81195 -11.75428 -11.55655 -11.48834 -11.41938 -11.25652 -11.07582 -10.68082 -10.41919 -9.82759 -9.78376 -9.48253 -9.47499 -9.23280 -9.14404 -8.72765 -8.43472 -6.11608 -4.15375 1.55060 2.21487 2.31330 2.56986 3.28178 3.34572 3.37276 3.38104 3.70241 3.76913 3.95917 4.11245 4.27223 4.38149 4.39000 4.46515 4.53506 4.70113 4.73739 4.87039 4.99655 5.02942 5.07558 5.14057 5.20613 5.22379 5.25369 5.25791 5.34625 5.39760 5.45988 5.53637 5.54196 5.77881 5.89965 5.98045 6.15364 6.21411 6.22609 6.56191 6.66544 6.71404 6.95071 7.43503 7.55730 7.60649 7.81167 7.85411 7.86602 8.18374 8.30702 8.90216 9.49692 10.99796 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.001546 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.352494 B =18111.632454 C =18492.712090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 C -0.141 4.141 4 C -0.158 4.158 5 N -0.612 5.612 6 C 0.111 3.889 7 C -0.114 4.114 8 H 0.102 0.898 9 C 0.129 3.871 10 N -0.706 5.706 11 C 0.509 3.491 12 O -0.518 6.518 13 C 0.497 3.503 14 O -0.533 6.533 15 N -0.686 5.686 16 C 0.118 3.882 17 C 0.010 3.990 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.156 4.156 27 C 0.520 3.480 28 O -0.526 6.526 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.414 0.586 43 H 0.411 0.589 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.025 0.975 47 H 0.025 0.975 48 H 0.263 0.737 49 H 0.109 0.891 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 16.266 -27.485 32.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.090 3.910 3 C -0.199 4.199 4 C -0.216 4.216 5 N -0.347 5.347 6 C -0.013 4.013 7 C -0.133 4.133 8 H 0.121 0.879 9 C 0.005 3.995 10 N -0.361 5.361 11 C 0.290 3.710 12 O -0.393 6.393 13 C 0.276 3.724 14 O -0.411 6.411 15 N -0.336 5.336 16 C -0.003 4.003 17 C -0.027 4.027 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.196 4.196 27 C 0.308 3.692 28 O -0.402 6.402 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.250 0.750 43 H 0.246 0.754 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.044 0.956 47 H 0.044 0.956 48 H 0.072 0.928 49 H 0.127 0.873 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.890 16.779 -27.431 32.886 hybrid contribution 0.530 -0.494 0.710 1.015 sum -6.360 16.286 -26.720 31.932 Atomic orbital electron populations 1.22199 0.94125 1.02497 1.02788 1.20489 0.93906 0.93059 0.83592 1.22100 1.02528 0.93116 1.02110 1.22193 1.01864 1.00737 0.96826 1.48434 1.51131 1.12453 1.22645 1.21959 0.98727 0.82203 0.98374 1.22401 0.99786 0.95255 0.95869 0.87926 1.21381 0.90651 0.98304 0.89118 1.45669 1.14832 1.48037 1.27578 1.20463 0.88744 0.79439 0.82313 1.90768 1.21323 1.53561 1.73661 1.19946 0.88084 0.81288 0.83078 1.90736 1.21108 1.54922 1.74342 1.46243 1.15988 1.44909 1.26487 1.21947 0.89700 0.99365 0.89301 1.19362 0.97055 0.93775 0.92505 1.21011 0.96142 1.28566 1.10554 0.92153 1.24999 0.95552 0.95870 0.97815 1.69953 1.18235 1.32883 1.31964 0.86496 0.81806 0.77852 0.81295 1.20545 1.21154 1.19730 1.22561 1.05296 0.93208 0.98524 1.20865 0.77404 0.87911 0.83028 1.90746 1.54485 1.17724 1.77275 0.92065 0.91204 0.92101 0.91276 0.92375 0.91212 0.92120 0.91176 0.92066 0.89750 0.90411 0.90348 0.90116 0.74979 0.75374 0.91829 0.91820 0.95647 0.95644 0.92767 0.87302 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 8.54 37.16 0.32 -0.43 16 2 C 0.17 1.03 1.20 -131.81 -0.16 0.88 16 3 C -0.14 -1.07 7.00 37.16 0.26 -0.81 16 4 C -0.16 -0.72 8.49 37.16 0.32 -0.41 16 5 N -0.61 -4.00 2.76 -157.53 -0.43 -4.43 16 6 C 0.11 0.46 6.16 -3.12 -0.02 0.44 16 7 C -0.11 -0.52 3.18 -88.99 -0.28 -0.80 16 8 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 9 C 0.13 0.83 4.96 -4.04 -0.02 0.81 16 10 N -0.71 -6.58 5.44 -60.73 -0.33 -6.91 16 11 C 0.51 6.84 7.89 -11.58 -0.09 6.74 16 12 O -0.52 -7.98 16.48 5.50 0.09 -7.89 16 13 C 0.50 8.05 7.89 -11.58 -0.09 7.95 16 14 O -0.53 -9.57 16.48 5.50 0.09 -9.48 16 15 N -0.69 -12.00 5.55 -60.72 -0.34 -12.34 16 16 C 0.12 2.41 5.61 -4.04 -0.02 2.39 16 17 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 18 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 22 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.16 -0.99 6.27 -26.70 -0.17 -1.16 16 27 C 0.52 4.63 7.85 -10.81 -0.08 4.54 16 28 O -0.53 -6.61 13.99 5.55 0.08 -6.53 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 32 H 0.07 0.65 7.08 -51.93 -0.37 0.28 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.66 7.06 -51.93 -0.37 0.29 16 35 H 0.06 0.22 7.21 -51.92 -0.37 -0.15 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.24 7.12 -51.93 -0.37 -0.13 16 39 H 0.08 0.27 7.89 -51.93 -0.41 -0.14 16 40 H 0.08 0.53 8.01 -51.93 -0.42 0.11 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.41 3.47 7.90 -40.82 -0.32 3.15 16 43 H 0.41 6.84 7.94 -40.82 -0.32 6.52 16 44 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.11 0.69 7.81 -51.93 -0.41 0.29 16 50 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 409.21 15.07 6.17 6.17 Total: -1.00 -33.41 409.21 -7.94 -41.35 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.38 Total: 1.83 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.60 Total: 7.26 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.37 Total: -48.78 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.26 Total: -23.89 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.41 -7.94 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329189620.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.683 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds