Wall clock time and date at job start Tue Mar 31 2020 22:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47162 * 239.99539 * 2 1 3 5 5 N 1.46505 * 109.46921 * 119.99803 * 2 1 3 6 6 C 1.46762 * 124.34893 * 59.99677 * 5 2 1 7 7 C 1.54481 * 105.47266 * 163.00736 * 6 5 2 8 8 H 1.09002 * 110.96936 * 267.29627 * 7 6 5 9 9 C 1.53006 * 110.96809 * 143.57110 * 7 6 5 10 10 N 1.46500 * 109.46592 * 178.08669 * 9 7 6 11 11 C 1.34774 * 119.99813 * 179.97438 * 10 9 7 12 12 O 1.21349 * 120.00329 * 0.02562 * 11 10 9 13 13 C 1.49453 * 120.00174 * 180.02562 * 11 10 9 14 14 O 1.21345 * 119.99894 * 0.02562 * 13 11 10 15 15 N 1.34782 * 119.99847 * 180.02562 * 13 11 10 16 16 C 1.46503 * 119.99589 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.46895 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46760 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00308 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99307 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00624 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99471 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46927 * 90.00078 * 22 20 18 24 24 H 1.48500 * 109.47151 * 209.99737 * 22 20 18 25 25 H 1.48494 * 109.47376 * 329.99899 * 22 20 18 26 26 C 1.54625 * 101.79703 * 25.43215 * 7 6 5 27 27 C 1.34418 * 124.34939 * 240.02576 * 5 2 1 28 28 O 1.21283 * 124.93896 * 0.40982 * 27 5 2 29 29 H 1.09002 * 109.46771 * 300.00633 * 1 2 3 30 30 H 1.09001 * 109.46334 * 59.99866 * 1 2 3 31 31 H 1.08994 * 109.47490 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46839 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46792 * 299.99484 * 3 2 1 34 34 H 1.08997 * 109.47504 * 59.99542 * 3 2 1 35 35 H 1.09007 * 109.47146 * 300.00654 * 4 2 1 36 36 H 1.08999 * 109.47313 * 60.00298 * 4 2 1 37 37 H 1.08992 * 109.47321 * 180.02562 * 4 2 1 38 38 H 1.08999 * 110.24895 * 44.00382 * 6 5 2 39 39 H 1.09000 * 110.24643 * 282.00580 * 6 5 2 40 40 H 1.08997 * 109.46903 * 298.08663 * 9 7 6 41 41 H 1.08993 * 109.46894 * 58.09225 * 9 7 6 42 42 H 0.97004 * 120.00635 * 0.02562 * 10 9 7 43 43 H 0.96998 * 120.00195 * 0.02562 * 15 13 11 44 44 H 1.09007 * 109.46743 * 299.99739 * 16 15 13 45 45 H 1.08995 * 109.47340 * 59.99405 * 16 15 13 46 46 H 1.08997 * 109.46557 * 299.99352 * 17 16 15 47 47 H 1.08999 * 109.47127 * 59.99086 * 17 16 15 48 48 H 0.96996 * 120.00433 * 179.97438 * 21 20 18 49 49 H 1.09004 * 110.48744 * 93.86686 * 26 7 6 50 50 H 1.09001 * 110.48768 * 216.49998 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1963 6 6 1.7231 -2.0907 1.5227 7 6 2.7660 -2.4941 2.5885 8 1 3.6434 -2.9449 2.1247 9 6 2.1526 -3.4375 3.6252 10 7 3.1793 -3.8347 4.5918 11 6 2.8659 -4.6684 5.6033 12 8 1.7335 -5.0905 5.7132 13 6 3.9131 -5.0732 6.5898 14 8 5.0454 -4.6508 6.4803 15 7 3.5998 -5.9074 7.6010 16 6 4.6263 -6.3037 8.5683 17 6 4.0131 -7.2478 9.6045 18 6 5.0691 -7.6560 10.5992 19 1 6.0768 -7.2800 10.5017 20 6 4.7486 -8.5094 11.6336 21 7 3.5214 -8.9669 11.7525 22 14 6.0578 -9.0160 12.8661 23 1 6.0733 -8.0523 13.9959 24 1 5.7544 -10.3759 13.3797 25 1 7.3863 -9.0224 12.2027 26 6 3.1155 -1.1276 3.2220 27 6 2.7939 -0.1232 2.1361 28 8 3.1795 1.0266 2.1172 29 1 -0.3633 0.5140 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6769 1.9562 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6768 -0.2076 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 1.8292 -2.7153 0.6357 39 1 0.7154 -2.1789 1.9286 40 1 1.3416 -2.9278 4.1453 41 1 1.7629 -4.3237 3.1244 42 1 4.0845 -3.4971 4.5043 43 1 2.6948 -6.2453 7.6883 44 1 5.4379 -6.8130 8.0486 45 1 5.0153 -5.4172 9.0691 46 1 3.2013 -6.7389 10.1242 47 1 3.6244 -8.1342 9.1033 48 1 3.2960 -9.5675 12.4800 49 1 2.5000 -0.9471 4.1034 50 1 4.1738 -1.0860 3.4798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329189620.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:08 Heat of formation + Delta-G solvation = -141.100948 kcal Electronic energy + Delta-G solvation = -28881.741880 eV Core-core repulsion = 24714.546592 eV Total energy + Delta-G solvation = -4167.195287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.95715 -41.52748 -39.63814 -37.95114 -37.57677 -36.79477 -35.39356 -34.73755 -31.80459 -31.64875 -29.23435 -28.50281 -28.22351 -27.61463 -26.52380 -24.48466 -22.78046 -22.64641 -21.89237 -21.34520 -19.63464 -19.51852 -18.56092 -17.95827 -17.54320 -17.41925 -17.08937 -16.51941 -16.43830 -16.23331 -15.95310 -15.90600 -15.26330 -15.04697 -14.83651 -14.75902 -14.69823 -14.51077 -14.29702 -14.21384 -13.61539 -13.43781 -13.24615 -13.09045 -12.98380 -12.93664 -12.87544 -12.72076 -12.60786 -12.51926 -12.28147 -12.26473 -12.22932 -11.94629 -11.87289 -11.67167 -11.42705 -10.67488 -10.60420 -10.47819 -10.29422 -10.16383 -9.66374 -8.22534 -6.33566 0.36390 1.32535 1.44392 1.44661 1.55982 1.57138 1.98042 2.16425 2.40902 2.71047 3.12546 3.24320 3.37739 3.52497 3.66450 3.81154 3.93124 4.01428 4.10368 4.26731 4.40822 4.47044 4.53482 4.59167 4.61859 4.66354 4.69651 4.71368 4.79179 4.82744 4.83216 4.89231 4.94227 4.95929 5.07863 5.11060 5.18746 5.20324 5.28881 5.37372 5.43971 5.56599 5.71960 5.76767 5.95307 6.14324 6.16600 6.38854 6.73900 6.81242 6.96742 7.18642 7.36020 8.89316 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.001546 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.352494 B =18111.632454 C =18492.712090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 C -0.135 4.135 4 C -0.152 4.152 5 N -0.608 5.608 6 C 0.109 3.891 7 C -0.097 4.097 8 H 0.117 0.883 9 C 0.128 3.872 10 N -0.686 5.686 11 C 0.517 3.483 12 O -0.539 6.539 13 C 0.497 3.503 14 O -0.550 6.550 15 N -0.690 5.690 16 C 0.138 3.862 17 C 0.018 3.982 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.006 3.994 21 N -0.927 5.927 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.264 1.264 26 C -0.154 4.154 27 C 0.508 3.492 28 O -0.574 6.574 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.420 0.580 43 H 0.415 0.585 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.008 0.992 47 H 0.009 0.991 48 H 0.265 0.735 49 H 0.109 0.891 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 15.708 -29.056 33.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.083 3.917 3 C -0.193 4.193 4 C -0.210 4.210 5 N -0.341 5.341 6 C -0.014 4.014 7 C -0.116 4.116 8 H 0.136 0.864 9 C 0.006 3.994 10 N -0.340 5.340 11 C 0.297 3.703 12 O -0.417 6.417 13 C 0.278 3.722 14 O -0.429 6.429 15 N -0.341 5.341 16 C 0.015 3.985 17 C -0.020 4.020 18 C -0.584 4.584 19 H 0.083 0.917 20 C -0.193 4.193 21 N -0.567 5.567 22 Si 0.791 3.209 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.188 1.188 26 C -0.194 4.194 27 C 0.297 3.703 28 O -0.454 6.454 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.258 0.742 43 H 0.251 0.749 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.026 0.974 47 H 0.027 0.973 48 H 0.074 0.926 49 H 0.127 0.873 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.991 16.226 -29.059 34.009 hybrid contribution 0.530 -0.248 1.114 1.259 sum -6.461 15.978 -27.945 32.833 Atomic orbital electron populations 1.22159 0.92795 1.03418 1.02715 1.20637 0.94871 0.92077 0.84139 1.22003 1.00927 0.94715 1.01632 1.22149 1.01093 1.01568 0.96230 1.48572 1.50001 1.13365 1.22176 1.22166 0.99079 0.80912 0.99202 1.22299 1.00418 0.93642 0.95271 0.86441 1.21594 0.89892 0.99169 0.88762 1.45659 1.15878 1.45982 1.26448 1.19828 0.87476 0.80338 0.82656 1.90773 1.21626 1.54916 1.74344 1.20443 0.88582 0.80225 0.82919 1.90725 1.22123 1.55289 1.74744 1.46073 1.15558 1.45742 1.26718 1.21460 0.89858 0.98215 0.88965 1.19185 0.96150 0.93734 0.92924 1.21459 0.96926 1.28669 1.11325 0.91744 1.25897 0.97701 0.95869 0.99825 1.70069 1.20178 1.33589 1.32834 0.85419 0.79214 0.77494 0.78750 1.19879 1.20763 1.18798 1.22559 1.05397 0.93611 0.97853 1.21321 0.77398 0.87672 0.83931 1.90721 1.56475 1.19784 1.78461 0.93498 0.89999 0.90607 0.93617 0.90680 0.93750 0.90494 0.90029 0.93232 0.87381 0.89139 0.90163 0.88796 0.74211 0.74909 0.92029 0.92131 0.97405 0.97302 0.92598 0.87333 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.54 71.99 0.61 -0.53 16 2 C 0.17 1.76 1.20 3.60 0.00 1.77 16 3 C -0.14 -2.11 7.00 71.98 0.50 -1.61 16 4 C -0.15 -1.03 8.49 71.98 0.61 -0.42 16 5 N -0.61 -7.08 2.76 -770.90 -2.13 -9.21 16 6 C 0.11 0.56 6.16 86.83 0.54 1.10 16 7 C -0.10 -0.62 3.18 -9.73 -0.03 -0.65 16 8 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 9 C 0.13 1.27 4.96 86.38 0.43 1.69 16 10 N -0.69 -11.20 5.44 -464.41 -2.53 -13.73 16 11 C 0.52 13.06 7.89 87.27 0.69 13.75 16 12 O -0.54 -15.81 16.48 -3.25 -0.05 -15.87 16 13 C 0.50 15.68 7.89 87.27 0.69 16.37 16 14 O -0.55 -19.18 16.48 -3.23 -0.05 -19.24 16 15 N -0.69 -24.05 5.55 -464.39 -2.58 -26.63 16 16 C 0.14 5.64 5.61 86.38 0.48 6.13 16 17 C 0.02 0.87 5.09 29.85 0.15 1.03 16 18 C -0.55 -29.81 9.11 25.60 0.23 -29.58 16 19 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 20 C 0.01 0.33 5.46 84.66 0.46 0.79 16 21 N -0.93 -54.25 13.29 21.45 0.28 -53.97 16 22 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 26 C -0.15 -1.78 6.27 30.62 0.19 -1.59 16 27 C 0.51 8.99 7.85 87.93 0.69 9.68 16 28 O -0.57 -15.27 13.99 -3.04 -0.04 -15.31 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.35 7.90 -2.39 -0.02 0.34 16 32 H 0.04 0.92 7.08 -2.39 -0.02 0.90 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.04 0.91 7.06 -2.39 -0.02 0.89 16 35 H 0.08 0.29 7.21 -2.38 -0.02 0.27 16 36 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.11 0.14 7.12 -2.39 -0.02 0.12 16 39 H 0.09 0.31 7.89 -2.39 -0.02 0.29 16 40 H 0.08 0.86 8.01 -2.39 -0.02 0.84 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.42 6.06 7.90 -92.71 -0.73 5.33 16 43 H 0.41 13.88 7.94 -92.71 -0.74 13.14 16 44 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 45 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 49 H 0.11 1.27 7.81 -2.38 -0.02 1.26 16 50 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -73.52 409.21 0.67 -72.85 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.52 Total: 18.12 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 6.26 Total: 17.93 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -6.94 Total: -103.53 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.15 Total: -50.42 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -73.52 0.67 -72.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329189620.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.249 kcal (2) G-P(sol) polarization free energy of solvation -73.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds