Wall clock time and date at job start Tue Mar 31 2020 22:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00229 * 2 1 4 4 O 1.21582 * 120.00123 * 180.02562 * 3 2 1 5 5 N 1.34779 * 119.99559 * 0.02562 * 3 2 1 6 6 C 1.46502 * 119.99726 * 179.97438 * 5 3 2 7 7 C 1.50701 * 109.47150 * 179.97438 * 6 5 3 8 8 H 1.08001 * 119.99469 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00245 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99746 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00399 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46899 * 90.00094 * 11 9 7 13 13 H 1.48496 * 109.47399 * 210.00382 * 11 9 7 14 14 H 1.48501 * 109.46993 * 330.00609 * 11 9 7 15 15 C 1.46499 * 120.00225 * 180.02562 * 2 1 3 16 16 H 1.08999 * 115.51688 * 154.40935 * 15 2 1 17 17 C 1.53002 * 117.43871 * 9.00255 * 15 2 1 18 18 H 1.08997 * 119.54318 * 4.11635 * 17 15 2 19 19 C 1.57742 * 116.08314 * 161.57871 * 17 15 2 20 20 N 1.48152 * 105.08352 * 39.61443 * 19 17 15 21 21 C 1.34773 * 127.84021 * 219.14227 * 20 19 17 22 22 O 1.21506 * 120.00024 * 179.97438 * 21 20 19 23 23 O 1.34638 * 120.00048 * 0.02562 * 21 20 19 24 24 C 1.45198 * 117.00369 * 179.97438 * 23 21 20 25 25 C 1.53003 * 109.46663 * 59.99991 * 24 23 21 26 26 C 1.52998 * 109.47258 * 179.97438 * 24 23 21 27 27 C 1.53005 * 109.47113 * 300.00155 * 24 23 21 28 28 C 1.48141 * 104.32285 * 39.15015 * 20 19 17 29 29 C 1.53001 * 117.44257 * 299.83322 * 15 2 1 30 30 H 1.08998 * 119.53974 * 355.87879 * 29 15 2 31 31 H 1.09002 * 109.47391 * 89.99442 * 1 2 3 32 32 H 1.09001 * 109.46813 * 329.99499 * 1 2 3 33 33 H 1.09004 * 109.47041 * 209.99626 * 1 2 3 34 34 H 0.97001 * 119.99999 * 359.97438 * 5 3 2 35 35 H 1.09000 * 109.47166 * 300.00164 * 6 5 3 36 36 H 1.09004 * 109.47230 * 60.00115 * 6 5 3 37 37 H 0.97002 * 120.00153 * 179.97438 * 10 9 7 38 38 H 1.09003 * 110.55042 * 280.49320 * 19 17 15 39 39 H 1.08996 * 109.91510 * 158.40994 * 19 17 15 40 40 H 1.08996 * 109.47539 * 60.00170 * 25 24 23 41 41 H 1.09000 * 109.46747 * 180.02562 * 25 24 23 42 42 H 1.09002 * 109.46873 * 299.99467 * 25 24 23 43 43 H 1.09001 * 109.46859 * 60.00412 * 26 24 23 44 44 H 1.09007 * 109.46999 * 180.02562 * 26 24 23 45 45 H 1.08996 * 109.47245 * 300.00014 * 26 24 23 46 46 H 1.09000 * 109.47148 * 59.99978 * 27 24 23 47 47 H 1.08999 * 109.46687 * 179.97438 * 27 24 23 48 48 H 1.08991 * 109.46655 * 299.99641 * 27 24 23 49 49 H 1.09004 * 110.41027 * 201.63103 * 28 20 19 50 50 H 1.09004 * 110.41083 * 79.19607 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 -0.0005 5 7 1.4650 2.3344 0.0005 6 6 2.1975 3.6031 0.0011 7 6 1.2182 4.7486 0.0010 8 1 0.1564 4.5512 0.0009 9 6 1.6778 6.0485 0.0020 10 7 2.9708 6.2888 0.0025 11 14 0.4640 7.4684 0.0011 12 1 0.1407 7.8441 1.4010 13 1 1.0646 8.6327 -0.6979 14 1 -0.7786 7.0569 -0.7004 15 6 2.1975 -1.2687 -0.0006 16 1 3.2006 -1.2315 -0.4254 17 6 1.3886 -2.5498 -0.2136 18 1 0.3212 -2.4827 -0.4237 19 6 2.2089 -3.8225 -0.6558 20 7 3.4628 -3.7656 0.1312 21 6 4.7096 -4.0748 -0.2766 22 8 5.6433 -3.9750 0.4946 23 8 4.9207 -4.4935 -1.5387 24 6 6.2890 -4.8085 -1.9086 25 6 6.8149 -5.9297 -1.0102 26 6 6.3307 -5.2636 -3.3687 27 6 7.1631 -3.5646 -1.7364 28 6 3.0353 -3.2917 1.4681 29 6 1.9651 -2.2176 1.1769 30 1 1.3272 -1.9030 2.0028 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 0.8900 0.5139 33 1 -0.3633 -0.8901 0.5138 34 1 0.4950 2.3344 0.0005 35 1 2.8242 3.6605 0.8911 36 1 2.8242 3.6613 -0.8889 37 1 3.2942 7.2033 0.0029 38 1 2.4279 -3.7849 -1.7229 39 1 1.6499 -4.7267 -0.4149 40 1 6.1922 -6.8159 -1.1328 41 1 7.8422 -6.1659 -1.2876 42 1 6.7852 -5.6058 0.0302 43 1 5.9559 -4.4651 -4.0090 44 1 7.3579 -5.5005 -3.6463 45 1 5.7081 -6.1499 -3.4910 46 1 7.1334 -3.2408 -0.6961 47 1 8.1904 -3.8012 -2.0137 48 1 6.7885 -2.7659 -2.3764 49 1 3.8777 -2.8535 2.0034 50 1 2.6042 -4.1119 2.0421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348772382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:36 Heat of formation + Delta-G solvation = -56.128022 kcal Electronic energy + Delta-G solvation = -30223.150012 eV Core-core repulsion = 26059.639427 eV Total energy + Delta-G solvation = -4163.510585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.14840 -40.15965 -38.88253 -36.95551 -35.22080 -34.26258 -34.17985 -32.72778 -31.86951 -28.71491 -27.64190 -27.54659 -27.36208 -27.09340 -25.91066 -22.99129 -22.18841 -20.79833 -20.41566 -19.61438 -19.08502 -18.27303 -18.02010 -16.81304 -16.72695 -16.14119 -15.95437 -15.35545 -15.18847 -14.94564 -14.63706 -14.28080 -14.10840 -13.85526 -13.61389 -13.58539 -13.13161 -12.97056 -12.74270 -12.63356 -12.58416 -12.39153 -12.35499 -12.11178 -12.06707 -11.89951 -11.80244 -11.65994 -11.63497 -11.47912 -10.97100 -10.91296 -10.70937 -10.54941 -10.29836 -10.19220 -10.00101 -9.43839 -9.36984 -9.11417 -8.73463 -8.34997 -7.75540 -6.15162 -4.22088 1.82719 2.68759 2.89339 3.24608 3.30742 3.33173 3.34505 3.63462 3.90435 4.24173 4.31658 4.44813 4.49881 4.54450 4.67060 4.67971 4.69368 4.78026 5.09925 5.14040 5.20800 5.22055 5.23495 5.25629 5.33566 5.36099 5.45258 5.46285 5.50320 5.55748 5.60841 5.61851 5.67504 5.69887 5.76983 5.95624 6.01804 6.07436 6.19307 6.29511 6.66327 7.08406 7.29805 7.48618 7.51397 7.56844 7.82754 8.01044 8.16655 8.73709 8.87656 9.28751 9.46326 10.95071 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.002272 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.075225 B =12319.858274 C =13293.395985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.615 5.615 3 C 0.698 3.302 4 O -0.591 6.591 5 N -0.726 5.726 6 C 0.266 3.734 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.063 3.937 10 N -0.885 5.885 11 Si 0.904 3.096 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.155 3.845 16 H 0.128 0.872 17 C -0.186 4.186 18 H 0.136 0.864 19 C 0.137 3.863 20 N -0.614 5.614 21 C 0.678 3.322 22 O -0.562 6.562 23 O -0.361 6.361 24 C 0.136 3.864 25 C -0.183 4.183 26 C -0.140 4.140 27 C -0.186 4.186 28 C 0.158 3.842 29 C -0.197 4.197 30 H 0.129 0.871 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.387 0.613 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.266 0.734 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.092 0.908 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 -26.829 -2.921 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.352 5.352 3 C 0.399 3.601 4 O -0.469 6.469 5 N -0.379 5.379 6 C 0.145 3.855 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.140 4.140 10 N -0.522 5.522 11 Si 0.732 3.268 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.048 3.952 16 H 0.145 0.855 17 C -0.206 4.206 18 H 0.154 0.846 19 C 0.014 3.986 20 N -0.355 5.355 21 C 0.434 3.566 22 O -0.451 6.451 23 O -0.276 6.276 24 C 0.100 3.900 25 C -0.240 4.240 26 C -0.197 4.197 27 C -0.243 4.243 28 C 0.036 3.964 29 C -0.218 4.218 30 H 0.147 0.853 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.221 0.779 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.856 -26.599 -2.788 26.758 hybrid contribution -1.253 0.854 0.074 1.518 sum -2.109 -25.745 -2.714 25.973 Atomic orbital electron populations 1.21713 0.80235 1.02859 1.01730 1.46447 1.05599 1.03766 1.79364 1.16005 0.85463 0.80188 0.78437 1.90889 1.11708 1.86059 1.58275 1.45864 1.09688 1.05506 1.76869 1.19014 0.92048 0.76762 0.97704 1.21199 0.92912 0.90684 1.53244 0.91996 1.24947 0.95418 0.98904 0.94763 1.69981 1.12561 1.20819 1.48826 0.86408 0.80788 0.81451 0.78194 1.20473 1.20998 1.19781 1.21095 0.96605 0.79195 0.98329 0.85465 1.24778 1.00045 0.94994 1.00812 0.84635 1.22382 0.83424 0.95916 0.96886 1.47377 1.04243 1.69012 1.14907 1.17271 0.81900 0.76430 0.81008 1.90921 1.40293 1.58526 1.55348 1.86290 1.33466 1.79168 1.28696 1.22102 0.77175 0.95553 0.95218 1.22515 1.01425 0.97516 1.02511 1.21857 1.02963 1.02211 0.92684 1.22533 0.99461 0.96933 1.05358 1.21747 0.97111 0.94893 0.82623 1.24128 1.02226 1.02100 0.93394 0.85292 0.92633 0.90911 0.91308 0.77909 0.95670 0.95670 0.92433 0.89347 0.89837 0.92300 0.91104 0.89412 0.91314 0.90099 0.91582 0.89286 0.91107 0.91841 0.88956 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 9.44 59.85 0.57 1.42 16 2 N -0.61 -9.61 3.21 -179.67 -0.58 -10.19 16 3 C 0.70 14.95 8.28 -86.91 -0.72 14.23 16 4 O -0.59 -15.37 16.05 5.29 0.08 -15.28 16 5 N -0.73 -15.86 5.41 -66.41 -0.36 -16.22 16 6 C 0.27 7.21 5.43 -5.19 -0.03 7.18 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.88 -26.29 13.29 55.43 0.74 -25.55 16 11 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.15 2.15 5.54 -67.93 -0.38 1.78 16 16 H 0.13 2.21 7.49 -51.93 -0.39 1.82 16 17 C -0.19 -1.69 6.48 -87.42 -0.57 -2.26 16 18 H 0.14 0.95 6.74 -51.93 -0.35 0.60 16 19 C 0.14 1.18 7.04 -0.54 0.00 1.17 16 20 N -0.61 -7.02 2.87 -172.90 -0.50 -7.52 16 21 C 0.68 9.20 8.01 54.05 0.43 9.63 16 22 O -0.56 -8.87 12.15 -19.28 -0.23 -9.10 16 23 O -0.36 -4.41 9.41 -40.32 -0.38 -4.79 16 24 C 0.14 1.40 1.13 -90.62 -0.10 1.30 16 25 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 26 C -0.14 -1.04 8.85 37.16 0.33 -0.71 16 27 C -0.19 -2.08 8.37 37.16 0.31 -1.77 16 28 C 0.16 1.63 6.95 -2.41 -0.02 1.62 16 29 C -0.20 -2.07 6.69 -89.29 -0.60 -2.67 16 30 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 33 H 0.07 0.55 6.46 -51.93 -0.34 0.21 16 34 H 0.39 7.20 6.05 -40.82 -0.25 6.95 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.09 0.77 7.87 -51.93 -0.41 0.36 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.09 1.13 7.88 -51.93 -0.41 0.72 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 400.96 15.07 6.04 6.04 Total: -1.00 -35.43 400.96 -9.19 -44.63 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -8.11 Total: 6.08 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: -0.88 Total: 16.06 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.70 Total: -59.49 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.53 Total: -29.17 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.43 -9.19 -44.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348772382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.501 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds